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Query: [R] KOG3116 Predicted C3H1-type Zn-finger protein, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQCRNMSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKRELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRTKPSVDDLDGSDDDDEEERPDATNGKAEVEKRSKKSKRKHRSKSDSESDSEASVFETDSDGSSGESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRKERRRRYSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKRRLast
1 -5.650sp|Q9NRM1|ENAM_HUMAN Enamelin OS=Homo sapiens GN=ENAM PE=2 SV=3  ali   13  4LRCRLGTSFPKLDNLVPKGKMKILLV-----LGLLGNSVAMPMHMPRMPGFSSKSEEMMRYNQ......................................................................................................................................................................................................................... 62
2 -5.560sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=4  ali   9  7LFMNGLIAGMDLVGLQNMRNMPGIPLTGLVGFPAGFATMPTGEEVKSTLSM..................................................................................................................................................................................................................................... 57
3 -5.420sp|O95391|SLU7_HUMAN Pre-mRNA-splicing factor SLU7 OS=Homo sapiens GN=SLU7 PE=1 SV=2  ali   9  3.......................................................................................KRGVKENSIITKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDE.............................................................................................................................................. 53
4 -5.320tr|E7EPF0|E7EPF0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZCCHC17 PE=4 SV=1  ali   20  1....................................................................................RSFQDYTGQKITLEAVLNTTCKKCAAQCHFAKDCPGGTKYSLIPD....................................................................................................................................................... 74
5 -4.960tr|B3KRS0|B3KRS0_HUMAN Uncharacterized protein OS=Homo sapiens GN=AMZ1 PE=2 SV=1  ali   15  2LQCRPAQ-------SFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAE...................................................................................................................................................................................................................................... 46
6 -4.960sp|Q400G9|AMZ1_HUMAN Archaemetzincin-1 OS=Homo sapiens GN=AMZ1 PE=1 SV=1  ali   15  2LQCRPAQ-------SFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAE...................................................................................................................................................................................................................................... 46
7 -4.910sp|Q5VTB9|RN220_HUMAN E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens GN=RNF220 PE=1 SV=1  ali   14  1MDLHRAAFKMENSS--LPNPLASPALMVLA--STAEASRDASIPCQQPRPFGVPVSVDK............................................................................................................................................................................................................................. 56
8 -4.900sp|Q13790|APOF_HUMAN Apolipoprotein F OS=Homo sapiens GN=APOF PE=1 SV=2  ali   19  26QNCLGKARER---GRDGAIDLGYDLLMTMAGMSGGPMGLAISAALKPALRSGVQQ................................................................................................................................................................................................................................. 77
9 -4.880sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2  ali   24  2FQGTNGTS--DPTAQLRIMPLPAGGPSISQGLPASRYNTAADALAALVDAAAS................................................................................................................................................................................................................................... 57
10 -4.650sp|Q86X95|CIR1_HUMAN Corepressor interacting with RBPJ 1 OS=Homo sapiens GN=CIR1 PE=1 SV=1  ali   38  30.....................................................................................................NVRCIKCHKWGHVN-ECP................................................................................................................................................................. 49
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.