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Query: [DL] KOG3999 Checkpoint 9-1-1 complex, HUS1 component, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRFKTRISNLYTLTRLVQALDKIGRFCWLRLMPETVNFVIVPDFRMTQVWSVLEVETIFEDYVVQSNADNVINLEVPIDNFYKALRSAANASDSTVRLSKKNNQPLLSLSTTWSGRAFGSNIVTHNIPVRVLSQSYVSVIKEPTAPEPDCHIFLPQLNFLRHVVDKYKSLSDRIIMSANMSGELQLSVNIPSARVSTKWKGLENPELDPSQVEDISRHPSQTRAPEEFVHMRLDSKDLVNMLKISSVAKRVIACFCEGHALVLYVYITDPEDEHTAVLTYYISTYVDLast
1 -5.030sp|Q2TAZ0|ATG2A_HUMAN Autophagy-related protein 2 homolog A OS=Homo sapiens GN=ATG2A PE=1 SV=3  ali   13  1............LEMFAQTIETVLRRIKVTFLDTVVRVSPGDGERGVAVEVRVQRLEYCDEAVRDPSQAPPVDVHQPPAFLHKLLQ......................................................................................................................................................................................................... 76
2 -4.750sp|O60244|MED14_HUMAN Mediator of RNA polymerase II transcription subunit 14 OS=Homo sapiens GN=MED14 PE=1 SV=2  ali   13  2...............................................................................................................................................................MRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFETRVKANTLIAFTKLLGAPTHILRDCVH.............................. 104
3 -4.720sp|Q6ZSC3|RBM43_HUMAN RNA-binding protein 43 OS=Homo sapiens GN=RBM43 PE=2 SV=1  ali   1..................................................................RSGEMLVLDTDVKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQVGSQPNNAKHVKE-LIEEWSHALYLKLRKETFILEGKE--NREKRMIKRACEQLSSRYLEVLINLYRTHIDIIGSSSDTYLFKKGVMK...................................................................................... 136
4 -4.050sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization domain-containing protein 1 OS=Homo sapiens GN=NOD1 PE=1 SV=1  ali   1.................DTLCSLGQVAHRGMEKSLFVFTQEEVQASGLQERDMQLGFLRALPELGPGGDQQSYFHLTLQAFFTAFFLVLDDRVGTQELLR........................................................................................................................................................................................... 85
5 -3.950sp|P41252|SYIC_HUMAN Isoleucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2  ali   31VTPDQSMVDEGMAREVINRIQKLRKKCNLVPT-DEITVYYKAKSEGTYLNSVIES---HTEFIFTTIKAPLKPYPVSPSDKVLIQEKTQKGSELEITLTRGSSL....................................................................................................................................................................................... 131
6 -3.840sp|Q8NG31|CASC5_HUMAN Protein CASC5 OS=Homo sapiens GN=CASC5 PE=1 SV=3  ali   23..WKKTCTTQHQLPKMLEEFSLVVHHCRIDINNNELRLLFSSSAAFAKFEITLFLSAYYPSVPLPSTIQNHV--NTSQDDIATILSKVPLENNYLKNVVKQ.......................................................................................................................................................................................... 140
7 -3.830sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=3  ali   1LRVEGKLLDDPSKQK--RKFSSFFKSLVIELDKELYG-----PDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLL................................................................................................................................................................................................................. 71
8 -3.720sp|Q05996|ZP2_HUMAN Zona pellucida sperm-binding protein 2 OS=Homo sapiens GN=ZP2 PE=2 SV=1  ali   62VEFPSSPGTKKWHASVVDPLGLDMPNCTYILDPEKLTLRAT-----------------YDNCTRRVHGGHQMTIRV----MNNSAALRHGAVMYQFFCP--------AMQVEETQGLSASTICQKDMSFSLFSGLADDSKGTKVQMGWSIEVGDGARAKTLTLPESLLIDNHRMTFHVPFNATGVTHYVQGNSHLYM.......................................................................................... 239
9 -3.680sp|O14524|T194A_HUMAN Transmembrane protein 194A OS=Homo sapiens GN=TMEM194A PE=1 SV=2  ali   77....................HDIWTRIQIRVNSSRVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKDTK.................................................................................................................................................................................................. 150
10 -3.680sp|Q8IYL2|TRM44_HUMAN Probable tRNA (uracil-O(2)-)-methyltransferase OS=Homo sapiens GN=METTL19 PE=2 SV=2  ali   11  52.RYSRRQSKKTQYREYLDFIKEVGFTCGFHVDEDCLRIPSTKR.................................................................................................................................................................................................................................................... 93

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 5 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.