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Query: [DL] KOG3999 Checkpoint 9-1-1 complex, HUS1 component, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRFKTRISNLYTLTRLVQALDKIGRFCWLRLMPETVNFVIVPDFRMTQVWSVLEVETIFEDYVVQSNADNVINLEVPIDNFYKALRSAANASDSTVRLSKKNNQPLLSLSTTWSGRAFGSNIVTHNIPVRVLSQSYVSVIKEPTAPEPDCHIFLPQLNFLRHVVDKYKSLSDRIIMSANMSGELQLSVNIPSARVSTKWKGLENPELDPSQVEDISRHPSQTRAPEEFVHMRLDSKDLVNMLKISSVAKRVIACFCEGHALVLYVYITDPEDEHTAVLTYYISTYVDLast
1 -5.030sp|Q2TAZ0|ATG2A_HUMAN Autophagy-related protein 2 homolog A OS=Homo sapiens GN=ATG2A PE=1 SV=3  ali   13  1............LEMFAQTIETVLRRIKVTFLDTVVRVSPGDGERGVAVEVRVQRLEYCDEAVRDPSQAPPVDVHQPPAFLHKLLQ......................................................................................................................................................................................................... 76
2 -4.750sp|O60244|MED14_HUMAN Mediator of RNA polymerase II transcription subunit 14 OS=Homo sapiens GN=MED14 PE=1 SV=2  ali   13  2...............................................................................................................................................................MRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFETRVKANTLIAFTKLLGAPTHILRDCVH.............................. 104
3 -4.720sp|Q6ZSC3|RBM43_HUMAN RNA-binding protein 43 OS=Homo sapiens GN=RBM43 PE=2 SV=1  ali   5  1..................................................................RSGEMLVLDTDVKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQVGSQPNNAKHVKE-LIEEWSHALYLKLRKETFILEGKE--NREKRMIKRACEQLSSRYLEVLINLYRTHIDIIGSSSDTYLFKKGVMK...................................................................................... 136
4 -4.050sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization domain-containing protein 1 OS=Homo sapiens GN=NOD1 PE=1 SV=1  ali   9  1.................DTLCSLGQVAHRGMEKSLFVFTQEEVQASGLQERDMQLGFLRALPELGPGGDQQSYFHLTLQAFFTAFFLVLDDRVGTQELLR........................................................................................................................................................................................... 85
5 -3.950sp|P41252|SYIC_HUMAN Isoleucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2  ali   9  31VTPDQSMVDEGMAREVINRIQKLRKKCNLVPT-DEITVYYKAKSEGTYLNSVIES---HTEFIFTTIKAPLKPYPVSPSDKVLIQEKTQKGSELEITLTRGSSL....................................................................................................................................................................................... 131
6 -3.840sp|Q8NG31|CASC5_HUMAN Protein CASC5 OS=Homo sapiens GN=CASC5 PE=1 SV=3  ali   9  23..WKKTCTTQHQLPKMLEEFSLVVHHCRIDINNNELRLLFSSSAAFAKFEITLFLSAYYPSVPLPSTIQNHV--NTSQDDIATILSKVPLENNYLKNVVKQ.......................................................................................................................................................................................... 140
7 -3.830sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=3  ali   8  1LRVEGKLLDDPSKQK--RKFSSFFKSLVIELDKELYG-----PDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLL................................................................................................................................................................................................................. 71
8 -3.720sp|Q05996|ZP2_HUMAN Zona pellucida sperm-binding protein 2 OS=Homo sapiens GN=ZP2 PE=2 SV=1  ali   7  62VEFPSSPGTKKWHASVVDPLGLDMPNCTYILDPEKLTLRAT-----------------YDNCTRRVHGGHQMTIRV----MNNSAALRHGAVMYQFFCP--------AMQVEETQGLSASTICQKDMSFSLFSGLADDSKGTKVQMGWSIEVGDGARAKTLTLPESLLIDNHRMTFHVPFNATGVTHYVQGNSHLYM.......................................................................................... 239
9 -3.680sp|O14524|T194A_HUMAN Transmembrane protein 194A OS=Homo sapiens GN=TMEM194A PE=1 SV=2  ali   9  77....................HDIWTRIQIRVNSSRVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKDTK.................................................................................................................................................................................................. 150
10 -3.680sp|Q8IYL2|TRM44_HUMAN Probable tRNA (uracil-O(2)-)-methyltransferase OS=Homo sapiens GN=METTL19 PE=2 SV=2  ali   11  52.RYSRRQSKKTQYREYLDFIKEVGFTCGFHVDEDCLRIPSTKR.................................................................................................................................................................................................................................................... 93
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.