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Query: [C] COG1151 6Fe-6S prismane cluster-containing protein, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSETISEKSEGRVSYHDSVEEMVKKIREDGMSNVFDRYALQEKIRCKFCLEGLSCQLCSNGPCRISEKTGQEKGVCGIGPDAMAMRNFLLKNIMGAGTYSHHAYEAYRTLKATAEGRTPFKITDENKLKWMCEKLGIDTAQSINDMAFELAVILEDQQRIGVEDQNVMVEAFAPKKRIEAWKKLGIYPAGTVHEEQNCVASCLTNVDGSHISLAMKALRLGIATIYNTQIGLEMVQDILFGTPTPHEVNMDLGIMDPEYVNIVFNGHQPWIGAATILKAKTPEIQDMAKQAGAKGLRVVGSIETGQELLQRFPVDEVFVGHMGNWLAIEPLLATGTVDIFAMEENCSPPAIDMYAEKYQVTLAAVSTIIDLPGVNYKFPYDPAQADETAQRLIELGIENFKKRKERQIKPHVPQKIQKAIAGFSTEAVLGALGNKLDPLVDVIAKGQIKGVVALANCSTLRNGPQDWVTINLTKELIKRDILVVSGGCGNHALEVAGLCTLDAANNIAGNGLKAVCNALKIPPVLSFGTCTDTGRISMLVTALAEHLNVDVPQLPIAVTAPEWMEQKATIDGIFALAYGAYTHLSPTPFMTGARQLVDLLTNKAEDVTGGKIALGDDPMKVANDIEDHIMRKRKELGLSLast
1 -136.0006elq_X mol:protein length:633 Carbon Monoxide Dehydrogenase  ali model follow..  35  1.......MDKSKLSVDPVIPNLYRKAREEGISTVFDRYEAQQP-QCGFGLTGLCCRHCVQGPCRIDPFGGPQAGICGATAEVITARNLLRQVTAGAAAHVDHAYDVLEVLEQIAQGTESYSIKDQEKLKQVAFTLGIDTNKTEQEIVEEMCQIIYRDFANSGATPMTYLKANSPRERLETWEKLGVLPRNPDREIREALHQTTMGMDADPVNLILKTIRLGLVDGFAGLKLATDLQDIIFGTPQPVVTEANLGVLKEDYVNIIVHGHVPLLSEKIVEWSR--KLEDEAKKAGAKGINLAGICCTGNEVLMRQGVPL-----ATNFLAQELAIITGAVDLMVVDVQCIMPSLAEIAACYHTRLVTTMPIVKIPGAEHV-PFTTETADEASQQIVRMAIESYQKRNPAKVY--IPREKAKVVAGFSVEAIVKALADPLKPLIDNIVSGNILGVVATVGCNNVKVK-HDWFHIELVKELIKNNVLVVTTGCSAHALAKAGLMDPAAA-EWAGEGLRAVLTAIGLPPVLHMGSCVDNSRIGDLVIAVANYLKVSPKDLPIAASAPEYQHEKALSIGTWAVAMGIMTHLGVVPPVVGSSKVTRILTQDAEALIGGKFYVETDPYKAAAGIIEHIKAKRALLNL. 633
2 -133.0001mjg_A mol:protein length:674 CARBON MONOXIDE DEHYDROGENASE BETA SUBUNIT  ali model follow..  29  15EAPRVMEPKNRDRTVDPAVLEMLVKSKDDKVITAFDRFVAQQP-QCKIGYEGICCRFCMAGPCRIKATDPGSRGICGASAWTIVARNVGLMILTGAAAHCEHGNHIAHALVEMAEGKADYSVKDEAKLKEVCRRVGIEEGKSVLELAQEVGEKALEDFRRLKGEGATWLMTTINEGRKEKFRTHNVVPFGIHASISELVNQAHMGMDNDPVNLVFSAIRVALADYTGEH-IATDFSDILFGTPQPVVSEANMGVLDPDQVNFVLHGHNPLLSEIIVQAAR--EMEGEAKAAGAKGINLVGICCTGNEVLMRQG-----IPLVTSFASQELAICTGAIDAMCVDVQCIMPSISAVAECYHTRIITTADNAKIPGAYHI-DYQTATAIESAKTAIRMAIEAFKERKESNRPVYIPQIKNRVVAGWSLEALTKLLATPIRVLNQAILDGELAGVALICGCNNLKGF-QDNSHLTVMKELLKNNVFVVATGCSAQAAGKLGLLDPANVETYCGDGLKGFLKRLGLPPVFHMGSCVDNSRAVDLLMAMANDLGVDTPKVPFVASAPEAMSGKAAAIGTWWVSLGVPTHVGTMPPVEGSDLIYSILTQIASDVYGGYFIFEMDPQVAARKILDALEYRTWKLGVH 659
3 -130.0002yiv_X mol:protein length:656 CARBON MONOXIDE DEHYDROGENASE 2  ali model follow..  30  9VPRGSHMARQNLKSTDRAVQQMLDKAKREGIQTVWDRYEAMKP-QCGFGETGLCCRHCLQGPCRINPFGEPKVGICGATAEVIVARGLDRSIAAGAAGHSGHAKHLAHTLKKAVQGAASYMIKDRTKLHSIAKRLGIPEGQKDEDIALEVAKAALADFH-EKDTPVLWVTTVLPPSRVKVLSAHGLIPAGIDHEIAEIMHRTSMGCDADAQNLLLGGLRCSLADLAGCY-MGTDLADILFGTPAPVVTESNLGVLKADAVNVAVHGHNPVLSDIIVSVSK--EMENEARAAGATGINVVGICCTGNEVLMRHGIPA-----CTHSVSQEMAMITGALDAMILDYQCIQPSVATIAECTGTTVITTMEMSKITGATHV-NFAEEAAVENAKQILRLAIDTFKRRKGKPVE--IPNIKTKVVAGFSTEAIINALSKPLKPLIDNVVNGNIRGVCLFAGCNNVKVP-QDQNFTTIARKLLKQNVLVVATGCGAGALMRHGFMDPANVDELCGDGLKAVLTAIPLPPVLHMGSCVDNSRAVALVAALANRLGVDLDRLPVVASAAEAMHEKAVAIGTWAVTIGLPTHIGVLPPITGSLPVTQILTSSVKDITGGYFIVELDPETAADKLLAAINERRAGLGLP 649
4 -128.0006b6v_A mol:protein length:637 Carbon monoxide dehydrogenase  ali model follow..  33  1MWSHSSSKTIRSRSIWDDAHAMLEKAKAEGISTVWDRAAEQTP-ACKFCELGTTCRNCIMGPCRIANRKKMRLGVCGADADVIVARNFGRFIAGGAAGHSDHGRDLIETLEAVAEGKAGYTIRDVAKLRRIAAELGVAATRPAHDVAADLVTICYNDF--GSRRNALAFLARAPQVRRDLWQRLGMTPRGVDREIAEMMHRTHMGCDNDHTSLLVHAARTALADGWGGSMIGTELSDILFGTPRPRQSTVNLGVLRKDAVNILVHGHNPVVSEMILAATREPAVRQAAQDAGAADINVAGLCCTGNELLMRQG-----IPMAGNHLMTELAIVTGAADAIVADYQCIMPSLVQIAACYHTRFVTTSPKGRFTGATHV-EVHPHNAQERCREIVMLAIDAYTRRDPARV--DIPSQPVSIMSGFSNEAILEALGGTPKPLIDAVVAGQIRGFVGIVGCNNPKIR-QDSANVTLTRELIRRDIMVLATGCVTTAAGKAGLLVPEAA-SKAGEGLAAVCRSLGVPPVLHMGSCVDNSRILQLCALLATTLGVDISDLPVGASSPEWYSEKAAAIAMYAVASGIPTHLGLPPNILGSENVTAMALHGLQDVVGAAFMVEPDPVKAADMLEAHIVARRARLGLT 636
5 -127.0001jqk_A mol:protein length:639 carbon monoxide dehydrogenase  ali model follow..  29  1....MTHHDCAHCSSDACATEMLNLAEANSIETAWHRYEKQQP-QCGFGSAGLCCRICLKGPCRIDPFGEPKYGVCGADRDTIVARHLVRMIAAGTAAHSEHGRHIALAMQHISQGELDYSIRDEAKLYAIAKTLGVATERGLLAIVGDLAAITLGDFQNQDYDPCAWLAASLTPRRVKRLGDLGLLPHNIDASVAQTMSRTHVGCDADPTNLILGGLRVAMADLDGSM-LATELSDALFGTPQPVVSAANLGVMKRGAVNIAVNGHNPMLSDIICDVAADLRD-EAIAAGAAEGINIIGICCTGHEVMMRHGVPL-----ATNYLSQELPILTGALEAMVVDVQCIMPSLPRIAECFHTQIITTDKHNKISGATHV-PFDEHKAVETAKTIIRMAIAAFGRRDPNRVA--IPAFKQKSIVGFSAEAVVAALAKPLKPLVDNVVNGNIQGIVLFVGCNTTKVQ-QDSAYVDLAKSLAKRNVLVLATGCAAGAFAKAGLMTSEATTQYAGEGLKGVLSAIGLPLVMHMGSCVDNSRAVALATALANKLGVDLSDLPLVASAPECMSEKALAIGSWAVTIGLPTHVGSVPPVIGSQIVTKLVTETAKDLVGGYFIVDTDPKSAGDKLYAAIQERRAGLGL. 639
6 -91.0001gn9_A mol:protein length:544 HYBRID CLUSTER PROTEIN  ali model follow..  16  1.................................................SNAMFCYQCQETVGNK---GCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLRAIDRLVTGNLFATITNANFDDDILAERVRMT--KELAASLTDKSGLSDAALWEASEKSAMLLITFGLKGMAAYAKHADVLGKHENSLDAFMQEALAKT-LDDSLSVADLVALTLETGKFG-VSAMALLDAANTGTYGHPEITKVNIGV----GSNPGILISGHDL------------RDLEMLLKQTEGTGVDVYTHSEMPAHYYPAFKKYAHFKGNYGNAWWKQKEEFESFNGPVLLTTNCLVPPKDSYKDRVYTTGI-----VGFTGCKHI-PGEIGEHKDFSAIIAHAKTCPA----------PTEIESGEIIGGFAHNQVL----ALADKVIDAVKSGAIKKFVVMAGCDGRAKSRS---YYTDFAEGLPKDTVILTAGCAKYRYNKLNLGDIG-----------------GIPRVLDAGQCNDSYSLAVIALKLKEVFGLEDVNDLPIVYNIAWYEQKAVIVLLALLSLGVKIHLGPTLPAFLSPNVAKVLVEQF----NIGGITSPQDDLKA................. 541
7 -85.2001e1d_A mol:protein length:553 HYDROXYLAMINE REDUCTASE  ali model follow..  15  1....................................................MFCFQCQETAKNT---GCTVKGMCGKPEETANLQDLLIFVLRGIAIYGEKLKENDDFVLQGLFATITNANWDDAKLRNAFLAVYKAKNGKDFSEPLEKAKSVGILATENEDVRSLRELLIIGLKGVAAYAEHAAVLGFRKTEIDEFMLEALTTKDLSVDEMVALVMKGRRMAVTTMALL-DEANTTTYGNPEITQVNIGVG----KNPGILISGHDLKDMAELLKQTEGTGV----------DVYTHGEMLPANYYPAFKKYP-HFVGNYGGSWWQQNPEFESFNGPILLTTNCLVPLK---KENTYLDRLYTTGVVGYEGAKHI-ADRPAGGAKDFSALIAQAKKCPPPV---------EIETGSIVGGFAHHQVL----ALADKVVEAVKSGAIKRFVVMAGCDGRQKSRS---YYTEVAENLPKDTVILTAGCAKYRYNKLNLGDIG-----------------GIPRVLDAGQCNDSYSLAVIALKLKEVFGLDDINDLPVSYDIAWYEQKAVAVLLALLFLGVKIRLGPTLPAFLSPNVAKVLVENFNIKPIG------TVQDDIAAMMA............ 551
8 -81.9003cf4_A mol:protein length:807 Acetyl-CoA decarboxylase/synthase alpha subunit  ali model follow..  14  28AKEAAEEKEKELVNAGPTLFPGLEGYRDDWNFKLLDRYE------PVITPMCDQCCYCTYGPCDLSG---NKRGACGIDMKGHNGREFFLRVITGTACHAAHGRHLLDHLIEKYGEDLPLTLQSNVLTPNITISTGLS---------------------------------------PKTLGEVKPAMEYVEEQLTQLLATVHAGQESAEIDYDSKALFSGSLDHVGMDIVQVAAYDFPKADPEAPLVEIGMGTIDKSKPFLCVIGHNVAGVTYMMDYME--------DNNLTDKMEIAGLCCTAIDLTRYKEADRRYAKVIGSMSKELKVIRSGMPDVIVVDEQCVRGDIVPEAQKLKIPVIASNPKIMYGLPNRTDADVDETMEELKSVRLTMEMAPIRDAAGITALPTDEELVNMVAKCADCGACLLACPEEIDAEGLNLVMGTTPGIIAIIGCPNYAGGTKDVY--YIAEEFLKRNFIVVTTGCGAMDIGMFK-------DADGKTLYERFPGGFQCGGLANIGSCVSNAHITGAAEKVAAIFDYILNRVGACGLAWGAFSQKASSIGTGCNIFGIPAVLGPHSSKYRRALIAKTYEEDKWKVYDARNGQEMPIPPAPEFLLTTAETWQEAIPM. 708
9 -14.1001mjg_M mol:protein length:729 Carbon monoxide dehydrogenase alpha subunit  ali model follow..  136..............................................................................................................................................................................................................................................................................................................................................................................................................................................IGDPVVRRFGIKMVDWTIPGEAIILGRAK-----DSKALAKIVKELMGMGFMLFICDEAVEQLLEEN----------VKLGIDYI--------AYPLGNFTQIVHAANYALRAGEQRDYQRRRIRAFVLYLGEHDMVKTAAAFGAIFTGFPVITDQPLP.................................................. 283
10 -10.7001ru3_A mol:protein length:732 Acetyl-CoA synthase  ali model follow..  139..............................................................................................................................................................................................................................................................................................................................................................................................................................................IGDPVVRQYGIKMVDWTIPGEAIIIGRAK-----DSKAAKKIVDDLMGKGLMLFLCDEIIEQLLEENV----------KLGVDYI--------AYPLGNFTQVVHAANYALRAGLMFGYQRRRVLAFVLYLGEHDMVKTAAAMGAIFTGFPVITDQPLP.................................................. 286

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.