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Query: [R] COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIYEIAMLPVQKDKISEFRQAFGDVVPLLKRARGYRGHVLAQGVETPEVFNLIVRWRSLNDHTPGFEASEDHEQFMEGIQDYFSGEPTVYHLEGDNSGWSDYRHGKSGAALast
1 -54.5003gz7_A mol:protein length:115 Putative antibiotic biosynthesis monooxygenase  ali model follow..  30  14MIQEIASILVQPGREADFEAGVAQARPLFMRARGCHGVALHRSIEAPQRYTLVVDWETVDNHMVDFRQSADFQEWRKLVGECFAEPPQVHHEQKV............... 108
2 -44.9004hl9_A mol:protein length:118 Antibiotic biosynthesis monooxygenase  ali model follow..  15  17MLKVIAQDFIKPEAIDIVLPLYRELVEKTRQEPLCLAYDLFVDQKDPGHFVFIEEWPDRAA-LDIHCATEHFTRLVPLINAHQRQDGTVVLMDAVPA............. 112
3 -44.3002omo_A mol:protein length:124 DUF176  ali model follow..  17  17MYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKD-AAAHKETAHYLTWRDTVADWMAEPRKGVIYGGLYPTGDD......... 116
4 -44.3004dpo_A mol:protein length:119 Conserved protein  ali model follow..  14  19AIRVVAKNQVKPEKVQEFMNLCKSLIEETLKEEGCIDYGVYQELENPEILTMLEEWKDEGS-LDQHIRSDHFKEIFPLLSECLDKETEINIYRKK............... 112
5 -43.5002gff_A mol:protein length:106 LsrG Protein  ali model follow..  15  1MHVTLVEINVKEDKVDQFIEVFRANHLGSIREAGNLRFDVLRDEHIPTRFYIYEAYTD-EAAVAIHKTTPHYLQCVEQLAPLMTGPRKKTVFIGLMPGSLE......... 100
6 -43.1002bbe_A mol:protein length:108 hypothetical protein SO0527  ali model follow..  11  13QIVCVASFLSKEGKTEALIAALASLIPDTRREAGCIRYELNVSRDEPRRVTFVEKFVDIAA-FDEHCAKDAIQHYFHQVMPELVESFHVETYHQVIA............. 108
7 -43.1004zos_A mol:protein length:106 protein YE0340 from Yersinia enterocolitica subsp. enterocolitica 8081  ali model follow..  13  11ERHIICELRCEPENRERVKELVLKFVEPARLETGCLYYDLYQKIDEPDTFYIIDGWVNQEA-VTSHAENPHVAEVMSDLQPLLTFGPSISLITRVS.............. 105
8 -42.6002fb0_A mol:protein length:94 conserved hypothetical protein  ali model follow..  13  4MIRLNVFVRVNETNREKAIEAAKELTACSLKEEGCIAYDTFESSTRRDVFMICETWQNAEV-LAAHEKTAHFAQYVGIIQELAEMKLEKFEF.................. 94
9 -42.5004npo_A mol:protein length:125 Uncharacterized protein  ali model follow..  12  19MVISHGTLSASAEHAAHLRQLLVHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGA-MHTHLALPGVTQAIDALKHLNVTDLKITAYEAGEAI............ 115
10 -42.1005uq4_A mol:protein length:108 Monooxygenase  ali model follow..  11  5PVVKINAIEVPAGAGPELEKRFAHRAHAVENSPGFLGFQLLRPVKGEERYFVVTHWESDEA-FQAWANGPAIAAHAGHRANPVATGASLLEFEVVLDVGGTGKTA..... 108
11 -41.7003qmq_A mol:protein length:99 Autoinducer-2 (AI-2) modifying protein LsrG  ali model follow..  14  4MHVTLVEINVHEDKVDEFIEVFRQNHLGSVQEEGNLRFDVLQDPEVNSRFYIYEAYKD-EDAVAFHKTTPHYKTCVAKLESLMTGPRKKRLFNGLMP............. 99
12 -41.5003bm7_A mol:protein length:115 Protein of unknown function with ferredoxin-like fold  ali model follow..  19  14MIGVVATLKVQPAKAAEFEKVFLDLAAKVKAEPGCLVYQLTRSKTEEGVYKVLELYASMDA-LKHHGGTDYFKAAGAAMGPTMAGAPVIEYLDAVE.............. 109
13 -41.4001iuj_A mol:protein length:106 hypothetical protein TT1380  ali model follow..  14  1MFVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEA-FRAWTESPAFKEGHARSGEAFLGPNRLEAFEVVLDSEGRDG....... 106
14 -41.1003hx9_A mol:protein length:124 Protein Rv3592  ali model follow..  11  1MVVKINAIEVPAGAGPELEKRFAHRAHAVENSPGFLGFQLLRPVKGEERYFVVTHWESDEA-FQAWANGPAIAAHAGHRANPVATGASLLEFEVVLDVGGTGKTAGGVPR 110
15 -39.7001y0h_A mol:protein length:102 hypothetical protein Rv0793  ali model follow..  15  5PVAVIARFMPRPDARSALRALLDAMITPTRAEDGCRSYDLYES-ADGGELVLFERYRSRIA-LDEHRGSPHYLNYRAQVGELLTRPVAVTVLAPLDEASA.......... 102
16 -38.6001q8b_A mol:protein length:105 Protein yjcS  ali model follow..  11  13MHYITACLKIISDKDNEIMKEFKKLEEETNKEEGCITFHAYPLEPSERKIMLWEIWENEEA-VKIHFTKKHTIDVQKQELTEVEWLMKSNVND................. 105
17 -38.6001x7v_A mol:protein length:99 PA3566 protein  ali model follow..  14  7.LTLIATITAAPGHAEALERELRALVAPSRAEAGCLQYDLHQDRHDSHLFYMIEQWRDDAA-LERHQNTEHFLRFSRGNEALLQNVKIDQLYR................. 97
18 -38.1004dn9_A mol:protein length:122 Antibiotic biosynthesis monooxygenase  ali model follow..  10  17MYGLIGKMRATPGQRDALIAIL---VEGASSMPGCLSYVVAQDPKDPDAIWITEVWDSPES-HKASLSLPSVQDAIACGRPLIAALDEHHETVPVG.............. 108
19 -37.3001r6y_A mol:protein length:115 Protein ygiN  ali model follow..  16  1MLTVIAEIRTRPGQHQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAPDSIVMIEQWESIAH-LEAHLQTPHMKAYSEAVKGDVLE-MNIRILQPGISG............ 106
20 -37.1003fgv_A mol:protein length:106 uncharacterized protein with ferredoxin-like fold  ali model follow..  14  15.EVVIVKSTPQRGKFNAFAELVGKLVSETRDFPGCLGAYLMLA-PERNEQVVMHIWETPDA-LEAYLTWRADRGDFLEINEYLEVEQDFKTYQLA............... 106
21 -36.9003kg0_A mol:protein length:128 SnoaB  ali model follow..  12  16EVTFVNRFTV-HGAPAEFESVFARTAAFFARQPGFVRHTLLRERDKDNSYVNIAVWTDHDA-FRRALAQPGFLPHATALRALSTSEHGLFTARQTLPEGGDTTGS..... 118
22 -36.7003kng_A mol:protein length:125 SnoaB  ali model follow..  12  14EVTFVNRFTV-HGAPAEFESVFARTAAFFARQPGFVRHTLLRERDKDNSYVNIAVWTDHDA-FRRALAQPGFLPHATALRALSTSEHGLFTARQTLPEGGDTTGS..... 116
23 -35.9002pd1_A mol:protein length:104 Hypothetical protein  ali model follow..  10  5KLALFVRLEAKPGQEAALADFLASALPLANAESGTTAWFALK--FGPSTFGVFDAFAD-EAGRQAHLNGQIAAALMANAATLLSSPPNIEKVELLAAKLPA......... 102
24 -34.8003kkf_A mol:protein length:105 Putative antibiotic biosynthesis monooxygenase  ali model follow..  8  5NMVRLSRIIIDPERLEEYNAYLKEIEVSMRLEPGVLVLYAVAEKERPNHVTILEIYAD-EAAYKSHIATPHFKKYKEGTLDMVQMLELI..................... 93
25 -32.9003f44_A mol:protein length:220 putative monooxygenase  ali model follow..  13  6PIFKIKKLTIAENDRSEYIRYAEKMHDSIPAEEGTLLIGSGHDDAHGEDNYEIEVFRN-KGAEDLHIAGSHADDFVETVNKIATKQKVI..................... 94
26 -32.8002zdp_A mol:protein length:110 Heme-degrading monooxygenase isdI  ali model follow..  11  3MFMAENRLQLQKGSAEETIERFYN-RQGIETIEGFQQMFVTKTLEDTDEVKILTIWESEDS-FNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNK.............. 98
27 -31.6003mcs_A mol:protein length:219 Putative monooxygenase  ali model follow..  13  7.ILNVYDFEVKKDKETSYKSATEDVNKTMGVEQGVLGLFAATDERDKTTSYIVEIYND-YLAFSNHTKNQASKDFKAVIPQIAEGNLNSAEIDVQIAKDKKIEQNDN... 112
28 -31.2002ril_A mol:protein length:99 Antibiotic biosynthesis monooxygenase  ali model follow..  13  6.VTLINPFKVPADKLEAAIEYWEAHRDFMAQQPGYLSTQLHQSIDEGATYQLIAIWQSEAD-FYQAAQKMRQALGHVQVEGLCGNPALYRVIRT................ 99
29 -31.0001xbw_A mol:protein length:109 hypothetical protein isdG  ali model follow..  12  4KFMAENRLTLTKGTAKDIIERFYT-RHGIETLEGFDGMFVTQTLEDFDEVKILTVWKSKQA-FTDWLKSDVFKAAHKHVRSKNEDESSP..................... 92
30 -30.7002zdo_A mol:protein length:109 Heme-degrading monooxygenase isdG  ali model follow..  13  4KFMAEARLTLTKGTAKDIIERFYT-RHGIETLEGFDGMFVTQTLEDFDEVKILTVWKSKQA-FTDWLKSDVFKAAHKHVRSKNEDESSP..................... 92
31 -30.0004oz5_A mol:protein length:155 Bacillus subtilis HmoB  ali model follow..  9  65GFAVLNNIAVTQEGRPLFENKFKNRAGKVENEPGFEAIRVLRP-LDSDTYVILTLWETERA-FQDWQQSDSYKE---AHKKIFSRPSYVTTYFAVE.............. 155
32 -29.7003tvz_A mol:protein length:172 Putative uncharacterized protein yhgC  ali model follow..  9  71GFAVLNNIAVTQEGRPLFENKFKNRAGKVENEPGFEAIRVLRP-LDSDTYVILTLWETERA-FQDWQQSDSYKEAHKKRGTIFSRPSYVTTYFAVE.............. 172
33 -28.5001tz0_A mol:protein length:114 hypothetical protein  ali model follow..  12  7MFIETKTFTVKEGTSNIVVERFTG-EGIIEKFEGFIDLSVLVKKVRRGEVVVMIRWESEEA-WKNWETSEEHLAGHRAGRGKPKPNVDHAVYYVKSSKAAYQQS...... 114
34 -25.9004kia_A mol:protein length:167 Lmo2213 protein  ali model follow..  11  66GVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQSTKLTKA-MNMNKFLIISFWDSEVF-FHDWKKSPLSKEITNIMRKNNTQSGF...................... 151
35 -24.6001lq9_A mol:protein length:112 ACTVA-ORF6 MONOOXYGENASE  ali model follow..  8  10FVAVVTFPVDGPATQHKLVELATGGVQEIREVPGFLSATYHASTD-GTAVVNYAQWESEQAYRVNFGADPRSAELREALSSL............................ 91
36 -24.3005f9p_A mol:protein length:241 Anthrone oxidase-like protein  ali model follow..  15  121DYTVFTVFPVTPQGQDEALDALGPGQAFLAQVPGFRAHVVLKGLLEGAFVISYSQWDSKQAW-EAYRDQAPQDQDEARKAAVVAGEPYSNTYQVVHTRSAGEKLAAALEH 239
37 -23.9003fj2_A mol:protein length:186 Monooxygenase-like Protein  ali model follow..  11  79GIVVFEYIQLRDEEIPIFLQMYQHASLHFSETPGLQSTKLTKAMN-TNQFLIVSFWDSEVF-FQEWKKTPLHKEITSIMKKNQVGFSHEDIYHYPE.............. 174
38 -23.3003fez_A mol:protein length:186 uncharacterized ferredoxin fold protein related to antibiotic biosynthesis monooxygenases  ali model follow..  11  79GVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQSTKLTKAMNM-NKFLIISFWDSEVF-FHDWKKTPLSKEITNIMKKN............................ 158
39 -22.8004ae5_A mol:protein length:167 SIGNAL TRANSDUCTION PROTEIN TRAP  ali model follow..  10  66HFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKGTT-YKIYFGFADRHA-YEDFKQSDAFNDHFSKDAL............................. 144
40 -18.8002cb2_A mol:protein length:318 SULFUR OXYGENASE REDUCTASE  ali model follow..  20  159RVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEINTPQQYIVHVEWANTDALMFGMGRYPELRQVHDEVLDTLVYGPYIRILNPM............... 296
41 -17.3003bxv_A mol:protein length:308 Sulfur oxygenase/reductase  ali model follow..  20  160.VVAFGEHTVIPGKEEQFEDAIIKTLEMFKRAPGFLGAMLLKEIPTPPQYIVHVEWANLDALQFGMGRSPEYREVHDEALDTLIYGPYIRIINPV............... 296
42 -16.6005ixu_A mol:protein length:117 Uncharacterized protein  ali model follow..  14  9MLVEMRTYRITAGKVPEFLKIYQDEGLGIITQYARLRGCWTQDSGTLNSVVFWWAYDDYSHRRERLAADPQWQAFTPRIVPYLEH......................... 96
43 -15.2003bn7_A mol:protein length:120 Ferredoxin-like protein  ali model follow..  10  14MLFHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRVSELMVFKSVED-QKRYRDHPLLQKFVADCSHLWSK......................... 105
44 -14.4002qyc_A mol:protein length:103 Ferredoxin-like protein  ali model follow..  9  4MFLHVVMMEFDDGIDAGFFRTVDEYVARMKREDGLLLYHFGENVAARSTHATSSAFVDAAA-HDAYQVCPAHVAMKAFMGPRIKRVVVYDG................... 97
45 -14.3002ap6_A mol:protein length:112 hypothetical protein Atu4242  ali model follow..  17  1MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPNEIVHIWAFSSLDDRRARLMADPRWLSFLPKIRDLIEV......................... 89
46 -14.2003bgu_A mol:protein length:116 Ferredoxin-like protein of unknown function  ali model follow..  10  15GIRHIALFRWNDTVTPDQVEQVITALSKLPAAPELKNYAFGADLGLAADFAVVADLDGEDG-FRAYQDHPDHRAALAIIAPMLADRVAVQF................... 108
47 -14.1002jdj_A mol:protein length:105 REDY-LIKE PROTEIN  ali model follow..  5  1METIIHKIRLFDVAQDAFEFWVQNVYATCPDLPSVVRFDVHRASNAPYHYVEVIKITDRAA-FDADMETSTFAGLVQAFSRMAEVVEEL..................... 93
48 -14.0002ifx_A mol:protein length:114 Hypothetical protein  ali model follow..  11  2MIRLLYLLVKPAGSDETFRAECLRHYEMSHDVPGLHKYEVRLVAEQPTD--IGECWFKDDAAYATYMASDIRKAWFEHGKTFIGQLKPFRTAPVAGDEPAS......... 114
49 -13.7005k9f_A mol:protein length:112 NIPSNAP domain protein  ali model follow..  9  3MLVEQRTYWLKPGSVSTFLSLYEAEGLAIQAGALGRLLGYYFSTGDLNRVIQLWGFDSFEDRKAILSGNPQWKSFVGRAGSMIER......................... 91
50 -13.7002asy_A mol:protein length:123 Protein ydhR precursor  ali model follow..  6  18ATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLW-KVWTESEKNHEAGGIYLFTDEKS------ALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA...... 114
51 -13.6001wd6_A mol:protein length:123 Protein ydhR  ali model follow..  6  13ATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLW-KVWTESEKNHEAGGIYLFTDEKS------ALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA...... 109
52 -13.6003bde_A mol:protein length:120 Mll5499 protein  ali model follow..  11  14MIRHTVVFTLKHAHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYGFSMEFADQAA-YTRYNDHPDHVAFVRDRWVPEVEKFLEIDYVPLGSV............ 113
53 -13.1003fmb_A mol:protein length:118 Dimeric protein of unknown function and ferredoxin-like fold  ali model follow..  13  14MVKHIVLFKLRDDVPVEMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWALYSEFDNLDD-VKFYATHPEHVAAGKILAETKESRACVDY................... 110
54 -13.1002go8_A mol:protein length:122 Hypothetical protein yqjZ  ali model follow..  13  15...AVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVR--EADGRGITVSYWDSMDA-INHWRHHTEHQAAKEKGRSVWYESYAVRVAKVD............... 103
55 -13.0001q4r_A mol:protein length:112 protein At3g17210  ali model follow..  6  10PVKHVLLASFKDGSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENTHIFESTFESKEA-VAEYIAHPAHVEFATIFLGSLDKVLVIDY................... 105
56 -13.0003bb5_A mol:protein length:121 Stress responsive alpha-beta protein  ali model follow..  8  14MLYHLVMLEPEGEGAMDRIMEAMAILDGLAPEPGLTEFRHGPNRDFEQPYGFLCTFTDKAA-LDAYAVHPTHQRAGGMLVASCRN......................... 103
57 -12.9005b08_A mol:protein length:104 Olivetolic acid cyclase  ali model follow..  8  5AVKHLIVLKFKDEITEAQKEEFFKTYVNLVNIPAMKDVYWGKDVTQKNTHIVEVTFESVET-IQDYIIHPAHVGFGDVYRSFWEKLLIFDY................... 100
58 -12.8001vqy_A mol:protein length:116 hypothetical protein AGR_pAT_315  ali model follow..  10  7MIVEERIYRIRGGKMQEYLKLVREEGIAIQAPILGNLIGYFVTIGPLSQVIHMWGYASLDDRRGKLAEDQRWQAFIPRLSVLIES......................... 95
59 -12.7005xzq_A mol:protein length:140 Hydroxynitrile lyase  ali model follow..  7  18IVRHIVFNRYKSQLSQKQIDQIIADYGNLQNIPEMKEWKWGTDLGPAVTHAYESTFHSVAD-FLNFFYSPPALEFAKEFFPACEKIVVLNY................... 115
60 -12.6001vqs_A mol:protein length:116 hypothetical protein AGR_L_1239  ali model follow..  17  7MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPNEIVHIWAFSSLDDRRARLMADPRWLSFLPKIRDLIEV......................... 95
61 -12.6001si9_A mol:protein length:108 stable protein 1  ali model follow..  8  8LVKHTLLTRFKDEITREQIDNYINDYTNLLDLPSMKSFNWGTDLGMESTHAFESTFESKSG-LQEYLDSAALAAFAEGFLPTLSQRLVIDY................... 105
62 -12.6001rjj_A mol:protein length:111 expressed protein  ali model follow..  6  5GFKHLVVVKFKEDTKVD--EILKGLENLVSQIDTVKSFEWGEDKESHDTHAFSMTFENKDG-YVAFTSHPLHVEFSAAFTAVIDKIVLLDF................... 98
63 -12.5002pgc_A mol:protein length:207 uncharacterized protein  ali model follow..  10  7.YVILTVASVDFSYRETMARLMSSYSKDLIDNAGAKGTRFGSIGDHAGSLIFIQFYDDLTGALEIQSKSSVFKEIMDSGK.............................. 90
64 -12.5001x8d_A mol:protein length:104 Hypothetical protein yiiL  ali model follow..  11  1MIRKAFVMQVNPDAHEEYQRRHNPIWPELEASHGAHNYAIYL--DKARNLLFAMVEIESEERWNAVASTDVCQRWWKYMTDVMPANPD...................... 89
65 -12.4003hds_A mol:protein length:116 4-methylmuconolactone methylisomerase  ali model follow..  11  10MIRILYLLVKPESSHEQFRKECVVHFQMSAGMPGLHKYEVRLVAGNPTD--IGECWFASEEQYQVYMESDIRKAWFEHGKYFIGQLKPFVTEELV............... 116
66 -11.7005kak_A mol:protein length:126 Uncharacterized protein  ali model follow..  14  3MIVEERIYDLRPNGAREFAQHFEREGIAIQRPVLGRLIGYFYTIGPLNQVVHLWGYEDLEDRARRRAILLAMPEWQEYVRK............................. 84
67 -11.2002ftr_A mol:protein length:108 BH0200  ali model follow..  13  8MVKLIALYEQPEDKQAFDEHYFNTHAPLTRKIPGLRDMKVTRIVGESKFYLMCEMYYDDHESLQQAMRTDEGKASGKDAMKFAGKLLTLMIGEEMDE............. 108
68 -11.2002qlw_A mol:protein length:144 RhaU  ali model follow..  10  35LEKHAFKMQLNPGMEAEYRKRHDEIWPELVDQSGASDYSIHL--DRETNTLFGVLTRPKDHTMASLPDHPVMKKWWAHMADIMATNPD...................... 123
69 -11.2004za1_A mol:protein length:151 NosA  ali model follow..  7  9LYCTVVLWDLSRSAASLRAYLRDHAVDAYTTVPGLRKTWISSTGPEGEQWGAVYLWDSPEA------AYGRPPGVSKVVELIGYRPTERRYYSVEAATEGPAAAAAPFGK 116
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.