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Query: [S] COG2833 Uncharacterized protein conserved in bacteria, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDKPTYEQTLRGNAIRAISACDLDEKVRLARETASRWFARALSVRSPLDPPLPERPGRPEKPELVPPRMLKKRSLNTEHGRIALMHALAHIELNAIDLALDIVARFAVKPIPRSFFDGWMKVADDEARHFTLLRNRLKSLGADYGDMPAHDGLWQSAHQTRNDLEARLAVVPLILEARGLDVTPSLLEKMIETGDHETAAILNIIYNDEKTHVAVGAKWFRFFCARNRIDPAARFRELVRANFRGELKPPFNELARAEAGLTPSFYRSLSPVSILast
1 -41.4004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  15  2..............................................................PQLEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLP------DQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERKAAAAEGKVVTCLLIQSLIIECFAIAAYNIYIP----VADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNLPLVWLESLVEDFMIAYGENIGFTTREIMRMSAYGL 228
2 -41.0005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  12  9....................................................................KELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLP------ESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVA----DDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKNQVEGDAHTMAMSNIGFSTRDIMRLSAYGL 229
3 -40.7004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  14  2..............................................................PELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLP------EDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIP----VADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKNQVQGDAKGEALSNIGFSTREIMRMSSYGL 228
4 -40.3004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  15  19.................................................................SSEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLP------DHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPQTALGQGKTPTCLLIQALLIEAFAISAYHTYIP----VSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRREDLIEDFLIAYQTEIGFNTREITRMAAAAL 242
5 -39.9004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  16  28..........................................................................SDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLP------DHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPQTALGQGKTPTCLLIQALLIEAFAISAYHTYIP----VSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRREDLIEDFLIAYQTEIGFNTREITRMAAAAL 242
6 -39.6005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  15  9....................................................................AALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLP------DHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQQQAAAEGDLTTCMVIQALIIECFAIAAYNVYIP----VADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWREAIVEDFMIAYGEDIGFSMRDVMKMSARGL 229
7 -38.1005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  16  2....................................................................TQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIP------ADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARR----KRHDHDGNRAECLVIQGLIVECFAVAAYRHYLP----VADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTLAVETLASFSELFRESVGFEAVEARRL..... 217
8 -36.6005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  12  40..........................................................................TETYKDAYSRINAIVIEGEQEAHDNYLTLAELLA------DKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSEQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIP----VADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKDALIEDFMIAYGGNIGFNNRDIMRMSAQGL 254
9 -36.2005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  14  44..............................................................................KDAYSRINAIVIEGEDEAANNYVRLAELMP------EQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHA----DDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWREALMEDFTIAYQQNIGFSTRETLRMLTAGL 254
10 -32.9005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  11  9..........................................................................PQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAK----IIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKLFDGLQSSRWRENIATRFHMITEGVATVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKRVEELFPLAVQIVK----------KDKIEPLGYSIQELVNLMEELK 202
11 -30.1004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  11  6....................................................................RSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPT-----DSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGEVSNLPLFNWEDVIAFTFLVDGAGL----YQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNK------NRMQGAINFWFPRAVE---NETHLRDLNISDLTKNDLIN... 204
12 -29.3001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  14  91..........................................................................HPRWGETMKVISNFLEVGEYNAIAASAMLWDSATAA----EQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDARRTRAIISGDAVECSVNLQLVGEACFTNPLVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASAKFLNLFEYGSKFKVEPWVKTWNRWVSED--WGGIWIGRLGKYGV 321
13 -29.1003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  12  26..........................................................................PDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPT-----RRKAILLAKVQDEAGHGLYLYSAAETLGCAREDILDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAI----VNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAISARSLTWKIKRFTNDELRQR--FVDNTVPQVEMLGM 240
14 -29.0004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  9  1MAVDDDDKHDGFQTVKATIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQ-------------------KDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQGRL-EDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIDSPEAVIRAATVYNMIVEGTAESGYYTFRQIYKKAG-PGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELFIRYMDEDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQF 284
15 -27.9004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  12  29..........................................................................PDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPT-----RRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAAI----VNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQRQMLQDAISARSMAWKIKLHSNDELRQR--FVDNTVPQVEILGM 243
16 -27.6001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  11  1MAQKPVADAELEPVVEANMTRHLDTEDIWFAHDYVPFDQGENFAFLGGRDWD--------------------PSQSTLPRTITDACEILLILKDNLAGHHRELVEHFILED---WWGRWLGRWTAEEHLHAIALREYLVVTREV-ANEDVRVQHVMKGYRAEKYTQVETLVYMAFYERCGAVFCRNLAA---QIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGADRDKLQNVADAGIFGKPQLRQL..... 253
17 -26.9002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  10  1ISEFDSEQPHLATTWAARGWVEEEGIGSATLGRLVRAWPRRILDEWADYDTLVPDYPLE-AEHPLFLAAEPHQRQRVLTGMWIGYNERVIATEQLIAEAFDLVMHGVFPGSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKISERPPQPELVTYRRLRRVLADMLVWGAVAETCINALLALLAR--DATIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLSLLELNAAGIRGAE......... 294
18 -26.7003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  13  29...............................GGNAKFWHPADIDFTRDRA-------------------DWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRAEGRL-ADEMYLTQFAFEEAKHTQVFRMWLDAVGISLDDLPAYRQIFYAELPSPAAQVRASVTYNHIVEGMALTGYYAWHKICVERA-PGMQELVRRIGDDERRHMAWGTFTCRRHVAADDTVFETRMNELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYSTDKG 273
19 -25.7002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  10  47YRPQWDSEHTLNDPTRTAIRMEDWCAVSDPRQFYYGAYVGNRAKMQESAETSFGFCEKRNLLTRL---------SEETQKQLLRLLVPLRHVELGANMNNAKIAGDATAT----TVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAAQPMRKLVEDTL-VVDDWFELTLVQNILIDGMMYPLVDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNREEALKPLAEASVGIDGLNEARAELSAKFELQSRGVSA...... 333
20 -25.2005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  15  4..........................ENAVINRLVGNWHRRAAVKREEPDVYALFDPGRP--EDMIPFRGHPIWERLSDETRSRLNRNTVLIEQRIANPAFELVIG--PGLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRDSHITTIHQEHLDRCEEPWQRSLTTLATVAEISINAYLDLLAD--DQEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEAFVAPDFTESIVAFEGVPGWE......... 264
21 -24.7003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  15  91...............................................................................STLKSHYGAIAVGEYAAVTGEGRMARFSKAP----GNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFIAAKHFFDDII-TGRDAISVAIMLTFSFETGFTNMFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKREEAQKKWRLFAVLTGPVMDYYTPLEDRSQS-IIGQFERSLIDLGL 311
22 -24.5002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  10  1MVSKNKKLNLKDKY-QYLTRDMAWEPTYQDKKDIFPEEDFEGIKIT---DWSQWEDPFRLTMDAYWKYQAEKEKKLYAVNALKLFISGISPLEHAAFQGYSKVGRQFSGA----GARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHMHDRV-ARSAGPFEFLTAISFSFEYVLTNLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVPIVQRMMMDYMLPNKVMSWSEAWEVYYEQNGGALFKDLERYGI 315
23 -24.2001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  8  119...............................................................................ETLARFYTPARYLFHALQMGSVYIHQIAPAS----TITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKR-LIEKALIAWDWGEAFTAINLVTKPAVEEALQQLGSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEK--EGNREVLQKWVAKWEPEAYCSALPDGENAIVEAKSASRYVRQMMGL 330
24 -24.2003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  11  116...............................................................................HTMARCYSPLRYLFHCLQMSSAYVQQMAPAS----TISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEH-LMEKQLTAFDWGEAFVSLNLVVKPMIVESIKPLQQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALEN--PDNHAVIEGWIEKWRPLADR.......................... 295
25 -23.9001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  12  48..................TKYKMANETKEQFKLIAKEYARMEAVKDERQFGSLQDALTRLNAGVRVHPK---------NETMKVVSNFLEVGEYNAIAATGMLWDSAQAA----EQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPKGMKRVFSDGFISG-DAVECSLNLQLVGEACFTNPIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNLFEYGSKFKVEPWVKTWDRWVYED--WGGIWIGRLGKYGV 326
26 -23.5001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  13  1MSMLK--REDWYDLTRTTNWTPKYVTENELFPEEMSGARGISME-----AWEKYDEPYKITYPEYVSIQREKDSGAYSVSTMQLHFGAIALEEYAASTAEARMARFAKAP----GNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKAFFDDMMMTRDSVAVSIMLTFAFETGFTNMQLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKKDEAQQLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGL 311
27 -22.2002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  13  7.............................................................................DVKELIEGLNEDLAGEYSAIIMYNHNAATVSGIYRQ-VLKPFFESEISDEQGHALYLAEKIKTLGGT---------TTIPLRVKQAEDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLNDK................................................... 144
28 -22.0002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  12  4THSMPPQKLEIFKSLDDWAR----NNVLIHLKSVEKSWQPQDY-------------PDPVSDGFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGR---EKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKI............................... 238
29 -21.5003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  13  6.................................................................LEAQTQGPGSMKGEPKVIERLNEALFLELGAVNQYWLHYRLLNDWGYT-RLAKKEREESIEEMHHADKLIDRIIFLEGFP-------NLQTVSPLRIGQNVKEVLEADLKGEYDARASYKESREICDKLGDYVSKQLFDELLADEEGHIDFLETQLDLL................................................... 156
30 -21.5005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  13  1...........................................................................MKGDKTVIQFLNKQLTNELTAINQYFLHARMLNHWGFD-KLGKHEYEESIGEMKHADRLIARIFMLDGLPNLQDLHK-------LLIGEDVPELLACDLKLEQAAHATVREAIAHCESVRDYVSRDLFQDILDDTEEHIDYLETQIDLI................................................... 141
31 -21.5004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  8  1...........................................................................MNNPNPVATYALRLGDNGLVLAQRLGAWCGHAPE-----EIDLALANIGLDLLGQARNFLSYAAELNGCGDE-DERQYSNLLLVEQPNGNFADTIARQFFIDVWHV----ALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELSNRKMQQAV.................................... 162
32 -21.5002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  7  1MSSGVDLGTENLYFQSMSDTNESEIKQYPDIWKMYKQWTAEEVDLSKDL-------------------PHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVP---EARCFYGFQILIENVHSEMYSLLIDTYIRDMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRG-PGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGL---IGMNCILMKQYIEFVA 288
33 -21.5004cvp_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  15  1..........................................................................AMKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLK-RLNDVEYRESIDEMKHADRYIERILFLEGLPNLQDLGK-------LNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVRDYVSRDMMIEILRDEEGHIDWLETELDLI................................................... 142
34 -21.5002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  11  22.............................................................................DIKKLVDKLVKATAAEFTTYYYYTILRMHLTGMEGE-GLKEIAEDARLEDRLHFELMTQRIYELGGDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYG-KDPRTYDLAQRILQEEIEHEAWFLELLYGR................................................... 170
35 -21.4001bcf_A mol:protein length:158 BACTERIOFERRITIN  ali model follow..  15  1...........................................................................MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLK-RLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGK-------LNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLI................................................... 141
36 -21.4003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  8  32...............................KAEASFWTAEAVDLSKDI-------------------QHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQIT---EARCFYGFQIAMENIHSEMYSLLIDTYIKDMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRG-PGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKL---IGMNCTLMKQYIEFVA 264
37 -21.3003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  14  1...........................................................................MQGDAKVIEYLNAALRSELTAVSQYWLHYRLQEDWGFG-SIAHKSRKESIEEMHHADKLIQRIIFLGGHP-------NLQRLNPLRIGQTLRETLDADLAAEHDARTLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLM................................................... 141
38 -21.3003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  9  2..........................................................................GSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPE-----EIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLAFT--LLLVEQPNGNFADTIARQYFIDAWHV----ALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKMQQAIIDIALSEEGIAVDPRTLRAA--WEAEVFAGINEATL 213
39 -21.3001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  16  1......................................................................MAGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYG-ELAANMKLIAIDEMRHAENFAERIKELGGEP-------TTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHI................................................... 146
40 -21.3001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  14  7...............................................................................TKTAENLKQGFIGESMANRRYLYFAKRADEEGYP-EIAGLLRSIAEGETAHAFGHLDFIRQGGLT-----------PATDKPIGTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQL................................................... 140
41 -21.2005d8x_A mol:protein length:158 Ferroxidase  ali model follow..  13  1...........................................................................MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLK-RLGAHEYHESIDEMKHADKLIERILFLEGAPNLQDLGK-------LLIGANTQEMLQCDLNLELKATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLI................................................... 141
42 -21.2004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  13  9.............................................................................KGSKTEENLKYAFAGESQANRRYLYFASKADVEGQN-DIAALFRSTAEGETGHAHGHLEYLEAVGDPATG------------LPFGTSRQNLQSAIAGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALDGL................................................... 142
43 -21.2003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  15  1...........................................................................MQGDPDVLKLLNEQLTSELTAINQYFLHSKMQDNWGFT-ELAEHTRAESFEEMRHAETITDRILLLDGLP-------NYQRLFSLRVGQTLREQFEADLAIEYEVLERLKPGIVLCREKQDATSARLLEQILADEETHIDYLETQLQLM................................................... 141
44 -21.2001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  13  29THSMPPQKIEIFKSLDNWAE----ENILVHLKPVEKCWQPQDF-------------PDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDEPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRV--EKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKI............................... 263
45 -21.1003is7_A mol:protein length:158 Bacterioferritin  ali model follow..  13  1...........................................................................MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLK-RLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGK-------LLIGENTQEMLQCDLNLELKATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLI................................................... 141
46 -21.1003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  15  2..........................................................................GMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQDNWGFT-ELAAHTRAESFDEMRHAEEITDRILLLDGLP-------NYQRIGSLRIGQTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM................................................... 143
47 -21.1003e2c_A mol:protein length:158 Bacterioferritin  ali model follow..  15  1...........................................................................MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLK-RLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGK-------LNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDERGHIDWLRTELDLI................................................... 141
48 -21.0003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  12  14LNENKTLQRALEQWQPSFLMGPENSSNYDVYLRTAKGWADFGYVKMHDYRWGIFLAPQEGEK-EHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSL----YDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILSFFMFTFITDRDGK----FQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDAGVIDLPTLQKYLNFATYYTNGLKGRFEEEKIG... 325
49 -21.0004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  11  1...........................................................................MKGDQKVIEYLNRGLRSELTAVSQYWLHYRMLEDWGYK-DLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDP-------LRIGQTVKEVLESDLAAEREARALYQEGAAYAASVGDFPSKNLFEELMGDEEHHIDFLETQLDLV................................................... 141
50 -20.9002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  15  1.......................................................................ASGSMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQDNWGFT-ELAAHTRAESFDEMRHAEEITDRILLLDGLP-------NYQRIGSLRIGQTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM................................................... 145
51 -20.9005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  17  1...........................................................................MQGDPEVIEFLNEQLTAELTAINQYFLHAKLQDHKGWT-KLAKYTRAESFDEMRHAEVLTDRILLLDGLP-------NYQRLFHVRVGQSVTEMFQADREVELEAIDRLRRGIEVMRAKHDITSANVFEAILADEEHHIDYLETQLDLI................................................... 141
52 -20.7001sof_A mol:protein length:156 Bacterioferritin  ali model follow..  15  1...........................................................................MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLE-KLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGK-------LLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLI................................................... 141
53 -20.7004tof_A mol:protein length:158 Bacterioferritin  ali model follow..  13  1...........................................................................MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLK-RLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGK-------LLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLI................................................... 141
54 -20.6001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  14  1...........................................................................MKGDAKVIEFLNAALRSELTAISQYWVHFRLQEDWGLA-KMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDP-------LRIGEGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISLY................................................... 141
55 -20.4002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  11  56...............................KAEASFWTAEEIDLSSDL-------------------KDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKIT---EAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQN-HGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDL---IGMNSRLMSQYIEFVA 287
56 -20.4002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  7  39...............................KAEASFWTAEEVDLSKDI-------------------QHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQIT---EARCFYGFQIAMENIHSEMYSLLIDTYIKDMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRG-PGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKL---IGMNCTLMKQYIEFVA 271
57 -20.2006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  15  63..........................................................................SLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPKP----EFNGLGSTFAECEFRHSEAYSRLLEVLGYN-----LSNVLKDTKSQDNRKYMVSLILFSILIENVSLFSQFAILLSFTRFKGKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSIAVESD-EEGEIESIKKGDLVNFMKFRI 279
58 -19.9003sid_A mol:protein length:180 Symerythrin  ali model follow..  16  24...............................................................................NNTDANAASSIEVEMYECDCMYPTFAEIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQID-LRRALETALEVETIESKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE................................................. 178
59 -19.4002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  10  5LQKRKIYDTTASNASTGILNGKSSNVRFSWAYPLYKNWTPFEINMSHDA-------------------KQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLTDS----SLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQ-VSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKD--GDKIPGINPEDMETYISFIA 289
60 -18.9001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  10  1MSNEYDEYIANHTDPVKAINWNVI--PDEKDLEVWDRWLPEKIPVSNDI-------------------QSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETM---HEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRA-TNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIETEDIYDDLGWTEDVKRFLRYNA 268
61 -18.7004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  12  16............................................................................EANPRFAQLLLEQFGGATGELSAALQYWVQSFHVENA-GIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKS-WTASYLNEGGDVVRDLRANIAAEAGARQTYEELIK---LSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKL................................................ 180
62 -18.7003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  9  58...............................QAQASFWTAEEVDLSKDL-------------------PHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVP---EARCFYGFQILIENVHSEMYSLLIDTYIRDMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRG-PGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGL---IGMNCILMKQYIEFVA 290
63 -18.6004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  49..........................KYKWAWEHYLNGCANNWL---------------PTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEI-LDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQN-IGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIE--PRGILGLRASMFIDYVQHIA 310
64 -18.6004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  9  20...............................QNIAQFWTEEEIAVSSDK-------------------NTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENL---QAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLEVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQG-TASGEIINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMATEEIYTSIGLVEDVNRFVRYNA 261
65 -18.1003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  10  25...............................RLTSNFWLPEKVPLSNDI-------------------PAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTP---HEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRGDDPLKKKIASVFLESFLFYSGFWLPMYFSSRG-TNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQTDELYAETPWADDVKAFLCYNA 258
66 -18.1001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  7  51...............................KVEASFWTAEEIELAKDT-------------------EDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNP---EGKSFYGFQIMMENIYSEVYSMMVDAFFKDLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKK-PGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEK---FGMDLKSIHTYIEFVA 282
67 -18.1001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  11  25...............................RLTSNFWLPEKVPLSNDI-------------------PAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITP---HEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRSDEPLKKKIASVFLESFLFYSGFWLPMYFSSRG-TNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRTEALYAETGWVNDVKAFLCYNA 258
68 -18.0001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  10  1MTGNAKLIDRVSAINWNRLQDEKDAEVWDRLTGNF--WLPEKVPVSNDI-------------------PSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTP---HEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRGDEPLKRKVASTLLESFLFYSGFYLPMYWSSRA-TNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNEVETQDLYDEVGLTEDVKKFLRYNA 263
69 -17.9002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  10  57...............................KAEASFWTAEEIDLSSDL-------------------KDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEII---EAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPANDTNSFAERIVANACVEGILFSGSFCAIFWFKKQN-HGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDL---IGMNSRLMSQYIEFVA 288
70 -17.8003r2h_A mol:protein length:154 Bacterioferritin  ali model follow..  14  1...........................................................................MQGHPEVIDYLNTLLTGELAARDQYFIHSRMYEDWGFS-KLYERLNHEMEEETQHADALLRRILLLEGTP--------RMRPDDIHPGTTVPEMLEADLKLERHVRAALAKGIALCEQHKDFVSRDILKAQLADEEDHAYWLEQQLGLI................................................... 141
71 -17.7001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  10  66..........................................................................PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIP---ELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVAFACSFAFAERE-EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDSMIGLNKDILCQYVEYIT 312
72 -17.6004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  9  24...............................KLTEQFWLDTRIPLSNDL-------------------DDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRKDVRTA---HEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKNGTALEKKIASVFLETFLFYSGFFTPLYYLGNN-ANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGTESLYDTVGWTEEVKTFLRYNA 257
73 -17.6002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  12  14.............................................................................DVKSLIDQLNAALSEEWLAYYQYWVGALVVEGAMRA-DVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKKWFELARCKYDSPT-SVSLLNQNVSSERCAILRYQEIANFTNG-KDYTTCDIAKHILAEEEEHEQDLQDYLTDI................................................... 160
74 -17.4001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  9  1MGSSSSPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLSKDAENAEEIDLSKDIHDWNNRMNENERFFRVLAFFAASDGIVNENLVENFSTEVQIP---EAKSFYGFQIMIENIHSETYSLLIDTYIKDPKEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRG-PGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVAL---LGMNADLMNQYVEFVA 349
75 -17.3006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  9  1MGSSSSGLVPRGSTKNYYDRSVSPVEYAYFNRVTQNFWLPENIPVSNDL-------------------PSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQIKNSLTE---QEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEAHEWVVDNEALQAADDPLKSKIAAALMPGFLLYGGFYLPFYLSARG-PNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEKQAEMKQFVFDLLDKMIGLEKTLHQLYDGFGLADEAIRFSLYNA 288
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.