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Query: [K] COG3432 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTYGYNIFTVIKFSDNVYKLQLIYYSMQLERRKRGTMEIMFDILRNCEPKCGITRVIYGAGINYVVAQKYLDQLVKVGALNIKTENDRKIYEITEKGKLLRTHIEEFIKIRENLYSAKEKVSELLRTDSELast
1 -43.7004hw0_A mol:protein length:104 DNA-binding protein Sso10a-2  ali model follow..  100  1..........................MQLERRKRGTMEIMFDILRNCEPKCGITRVIYGAGINYVVAQKYLDQLVKVGALNIKTENDRKIYEITEKGKLLRTHIEEFIKIRENLYSAKEKVSELLRTDSE 104
2 -35.0001r7j_A mol:protein length:95 Conserved hypothetical protein Sso10a  ali model follow..  28  2...............................KKKSKLEIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQ----YMLTKKGEELLEDIRKFNEMRKNMDQLKEKINSVLSIRQ. 95
3 -20.3002qvo_A mol:protein length:95 Uncharacterized protein AF_1382  ali model follow..  19  11................................KEKALEILMTIYYESGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKSIIDIMEN................. 93
4 -19.7003u1d_A mol:protein length:151 uncharacterized protein  ali model follow..  15  28................................HETRLDVLHQILAQPDGVLSVEELLYRNDETEANLRYHVDELVDRGIVEKIPVPRATFYAVTGEGIALLRA........................... 107
5 -18.4002wte_A mol:protein length:244 CSA3  ali model follow..  15  146.................................REEMKLLNVLYE--TKGTGITELAKMLDKSEKTLINKIAELKKFGILT--QKGKDRKVELNELGLNVIKLNKSVIESSKSSEELVKENKG....... 231
6 -17.9003cta_A mol:protein length:230 Riboflavin kinase  ali model follow..  18  8..................................QYYRAIKKIKEA-RAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE.......................... 81
7 -17.2004b8x_A mol:protein length:147 POSSIBLE MARR-TRANSCRIPTIONAL REGULATOR  ali model follow..  11  36..................................ARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRNDGRGTLATITDKGREVVEALMAMDFGLGAYDEECGEIFAMLRP... 136
8 -17.1002oqg_A mol:protein length:114 Possible transcriptional regulator, ArsR family protein  ali model follow..  9  22..................................TRWEILTEL---GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTART--LERIGAEWDRRLAAIKQIAESMEE 112
9 -17.1003f6v_A mol:protein length:151 Possible transcriptional regulator, ArsR family protein  ali model follow..  5  53..................................TRRRLVQLL---TSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQG------LAQLRALFDSFIDELDRLVADATEEAA 140
10 -17.0002jsc_A mol:protein length:118 Transcriptional regulator Rv1994c/MT2050  ali model follow..  14  22..................................TRCRILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADS--HLARALGELVQVVLAVDTDQPCVAERAASGEA 112
11 -16.9003g3z_A mol:protein length:145 Transcriptional regulator, MarR family  ali model follow..  11  36..........................................VLYTLEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQQDRRKRLLSLTETGKAYAAPLKRTTRLFADLDALAEVMEKTISENKK 145
12 -16.9004asn_A mol:protein length:101 TUBR  ali model follow..  10  4.......................YFEEVMRKLTIEDVSILGWLFQAVFKAIKKSSIADELEYSTANFRKTLNKLEAIHFIGTVTGGKEHKLYLTEYGQQAVQQAIHHGEENEEVEEI............. 101
13 -16.7002hr3_A mol:protein length:147 Probable transcriptional regulator  ali model follow..  6  40.......................................VLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHQDGRRTRVSLSSEGRRNLYGNRAKRE-----EWLVRAMHACLDESER 128
14 -16.6002vxz_A mol:protein length:165 PYRSV_GP04  ali model follow..  12  14........................................RDILALLADGKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMDQYRQLGMIREVERLVTTNKLKFISPPRLHDLIIK 106
15 -16.4003nqo_A mol:protein length:189 MarR-family transcriptional regulator  ali model follow..  13  42..................................RQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIHDKRAINVKVTDLGKKVMVTCSRMADVFHEFTDELETLWSLLKKMYR 146
16 -16.4002obp_A mol:protein length:96 Putative DNA-binding protein  ali model follow..  16  18.......................................IVEVLLVLATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSEADGRGHASLTQEGAALAAQL.......................... 91
17 -16.4003f3x_A mol:protein length:144 Transcriptional regulator, marR family, putative  ali model follow..  19  42..........................................ILKATEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIKDRRIVIVEITPKGRQVLLEVNEMLSDVENVEELLEGLNKILSRIGS 141
18 -16.3002p8t_A mol:protein length:200 Hypothetical protein PH0730  ali model follow..  10  20.......................................VLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQRG----HFLTLKGKEIRDKLLSMFSEPIGVSVDGYPGIAIV..... 101
19 -16.3002nyx_A mol:protein length:168 Probable transcriptional regulatory protein, Rv1404  ali model follow..  12  46..................................PQFRTLVILSN--HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLTSRRELLAALTKRGRDVVRQVTEIARIVEQMAAERHGLVRALTAFTE 148
20 -16.2005jlu_A mol:protein length:150 Adhesin competence repressor  ali model follow..  19  46..........................................ILMLLQQRLTNTDLAKALNISQAAVTKAIKSLVKQDMLAGTVDARVTYFELTELAKPIASEHTHHHDETLNVAKELEIVDKFVTVFAE 146
21 -16.2005yhx_A mol:protein length:146 Zinc transport transcriptional regulator  ali model follow..  13  44..........................................LMLLAEQISTNAKIAEKLKISPAAVTKALKKLQEQELIKSSNDERVVLWSLTEKAVPVAKEHATHHEKTLSTDEEQEVISKFLSALTE 143
22 -16.2004yif_A mol:protein length:164 MarR family protein Rv0880  ali model follow..  8  50..................................SQLSALTTLAN--EGAMTPGALAIRERVRPPSMTRVIASLADMGFVDRAIDGRQVLVSVSESGAELVKAARRLAERLATLNSERDILRSAADLMLA 152
23 -16.1003b73_A mol:protein length:111 PhiH1 repressor-like protein  ali model follow..  15  1.........................SNAMRQSGSWMTIWDDRILEIIHEEGSPKELEDRDEISKSSVSRRLKKLADHDLLQPLANG---VYVITEEGEAYLN............................ 78
24 -16.0005jls_A mol:protein length:155 Adhesin competence repressor  ali model follow..  19  43..........................................ILMLLQQRLTNTDLAKALNISQAAVTKAIKSLVKQDMLAGTVDARVTYFELTELAKPIASEHTHHHDETLNVAKELEIVDKFVTVFAE 143
25 -16.0004rs8_A mol:protein length:84 AspA  ali model follow..  14  7..................................RAYIIVHLL---KVGKAKASEISENTQIPYQTVIQNIRWLLAEGYVVKEQKGEEIYYKLTD------KGKQMATAELEKIRKLVEVV......... 84
26 -15.8005yi0_B mol:protein length:146 Zinc transport transcriptional regulator  ali model follow..  13  44..........................................LMLLAEQISTNAKIAEKLKISPAAVTKALKKLQEQELIKSSNDERVVLWSLTEKAVPVAKEHATHHEKTLSTDEEQEVISKFLSALTE 143
27 -15.7001ub9_A mol:protein length:100 Hypothetical protein PH1061  ali model follow..  14  17..................................VRLGIMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVRPRTVVEITDFGMEEAKRFSSLKAVIDGLD............... 99
28 -15.7003f6o_A mol:protein length:118 Probable transcriptional regulator, ArsR family protein  ali model follow..  7  22.........................................AVLGRLSRGATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAW--LAEQQELWESRTDRLEQFVTEHTV 109
29 -15.7006ez1_A mol:protein length:127 DNA binding protein  ali model follow..  18  17.....................................AFQKNILTVLGEEKRELEEYYGEEVNHGRLYPNLDDLVNKGLVEKSLDKRTNEYALTNEGFDAVVDDLETLSKFVADADRRERVETIVADDAA 118
30 -15.7003boq_A mol:protein length:160 Transcriptional regulator, MarR family  ali model follow..  10  52.......................................AMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKADDRRSFSAKLTDAGLTTFKQARILAELLRAVSQDMVEASAALRGILE 151
31 -15.6003bj6_A mol:protein length:152 Transcriptional regulator, MarR family  ali model follow..  11  45..........................................ILEGLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERREHARSHRYWLTPRGEAIITAIRADSVELTAYHKVQLALTRFFADLAK 150
32 -15.6002eb7_A mol:protein length:146 146aa long hypothetical transcriptional regulator  ali model follow..  13  43..........................................LRATSDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVEDRRKILIEITEKGLETFNKGIEIEDEVILVLDKISKILKRIEEISQ 146
33 -15.6003zmd_A mol:protein length:178 PUTATIVE TRANSCRIPTIONAL REGULATOR  ali model follow..  8  58..................................NDYEILVNLSESEGDRMRMSDLATATMQSKSRLSHQITRMENANLVRRESDRRGLFAVLTEHGLETMRKVAP-----HHVASVRRHFIDLLAPED. 150
34 -15.5003jw4_A mol:protein length:148 Transcriptional regulator, MarR/EmrR family  ali model follow..  14  42..................................QQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRNNARQKNIYVLPKGAALVEEFNNIFLEVEE-KDEQKQLMSILIKVNR 146
35 -15.5004omy_A mol:protein length:118 NolR  ali model follow..  8  30..................................KRLLILDSLVK---EEMAVGALANKVGLSQSALSQHLSKLRAQNLVSTRRDAQTIYYSSSSD--SVMKILGALSEIY................... 101
36 -15.5003k0l_A mol:protein length:162 Repressor protein  ali model follow..  15  51..........................................ALSVLKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKATHGRRILVTVTPSGLDKLNQCNQVVQQLEA-INLAFLIRNNLELMVK 149
37 -15.5003u2r_A mol:protein length:168 Regulatory protein MarR  ali model follow..  8  47..................................QQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTENRRVVEVALTDAGLKLLKDLQCHERQLGHLADELHELIRLMEL... 148
38 -15.4004em0_B mol:protein length:178 Uncharacterized HTH-type transcriptional regulator SAR2349  ali model follow..  17  69..........................................ILRDIHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVEEDKRQKFLTLTPKGHELYEIVDQMQETINVMNQIHEILLKEAHND.. 178
39 -15.4005k5o_A mol:protein length:98 AspA  ali model follow..  18  14..................................RAYIIVHLL---KVGKAKASEISENTQIPYQTVIQNIRWLLAEGYVVKEQKGEEIYYKLTDKGKQLA------TAELEKIRKLVEVVQ........ 92
40 -15.4002fbk_A mol:protein length:181 transcriptional regulator, MarR family  ali model follow..  14  69.................................AAGWDLLLTLYRS-PEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRRDRRSASIRLTPQGRALVTHLQEQRTLEELAGRMLAGLEQGV..... 181
41 -15.4002qww_A mol:protein length:154 Transcriptional regulator, MarR family  ali model follow..  13  46..........................................MINVITPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNDSMDLTLKLSKKGEDLSKRSTANAFMYKAMMKVFENLTE....... 133
42 -15.3003tgn_A mol:protein length:146 Adc operon repressor AdcR  ali model follow..  10  44..........................................LMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDARVIFYQLTDLARPIAEEEHTLLTYEQVATQFTPNEQKVIQR... 131
43 -15.3002lkp_A mol:protein length:119 Transcriptional regulator, ArsR family  ali model follow..  10  33..................................SRLMILTQLRN---GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQL............................. 96
44 -15.2002eth_A mol:protein length:154 transcriptional regulator, putative, Mar family  ali model follow..  13  43..........................................AFLYVFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREVDRRTYRVVLTEKGKEIFGEILSNEEDFKVVSEGFNRMVEALSREGR 148
45 -15.1004fx0_A mol:protein length:148 PROBABLE TRANSCRIPTIONAL REPRESSOR PROTEIN  ali model follow..  11  34..................................TQFSTLAVISLSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVMADARCKRIELTAKGRAALQKAAEVTASVGDWPRVRRDIANLGQAAEA 142
46 -15.1003zpl_A mol:protein length:177 PUTATIVE MARR-FAMILY TRANSCRIPTIONAL REPRESSOR  ali model follow..  12  51..................................VYYGLLVKLAESPRRRLRMTELAKYAKITRSRLSHAVARLEKNGWVRRESDKRGQFAILTDEGYEVLRRVDAVRQAQKSLGEIMRIVAEGLQPSEA 163
47 -15.1005f6f_A mol:protein length:161 MarR family regulatory protein  ali model follow..  10  47.................................NEQRHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQ-EEENEQMKANLTKMLS 152
48 -15.1005xpq_A mol:protein length:136 Uncharacterized HTH-type transcriptional regulator Rv0081  ali model follow..  15  37..................................ARIRILELLVE---RDRSVGELLSSVGLESSNLSQQLGVLRRAGVVAARRDGNAMIYSIAAP--DIAELLAVARKVLARVLSDRVAVLEDLRAGGS 128
49 -15.1005fb2_A mol:protein length:140 MarR family regulatory protein  ali model follow..  10  32.................................NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQ-EEENEQMKANLTKMLS 137
50 -15.1003kp2_A mol:protein length:151 Transcriptional regulator TcaR  ali model follow..  12  44..........................................LNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKDQRLKIIKLSNKGKKYIKERKAISKEIEKVRQVLEIIDYRIQSYTS 149
51 -15.0001ku9_A mol:protein length:152 hypothetical protein MJ223  ali model follow..  13  31.......................................VYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIERKNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEEEK 123
52 -15.0003fm5_A mol:protein length:150 Transcriptional regulator  ali model follow..  13  44.......................................VLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTSDRRNKLIAATEEGRRLRDDAKARVDAAHG-DTVVNQMRDTLQSIAF 143
53 -15.0003f72_A mol:protein length:122 Cadmium efflux system accessory protein  ali model follow..  15  43..................................NRAKITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGGEAIRQI-----MMIALAHKKEVKVNV......... 122
54 -15.0005hsm_A mol:protein length:160 Uncharacterized HTH-type transcriptional regulator Rv2887  ali model follow..  14  55..........................................CLRMLSPGLSSAELARHASVTPQAMNTVLRKLEDAGAVARPSSGRSLPATLTARGRALAKRAEAVVRAADA-APQQREFKRMLEKLGS 153
55 -15.0002frh_A mol:protein length:127 Staphylococcal accessory regulator A  ali model follow..  7  38..................................EEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRDERTVLILVNAQQRKKIE------SLLSRVNKRITEANNEIE.... 126
56 -15.0002a61_A mol:protein length:145 transcriptional regulator Tm0710  ali model follow..  18  38..........................................ILQKIEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTADRRAYFLVITRKGEEVIEKVEKSSKILDYLKELKGVMERNFSKQ.. 145
57 -15.0005duk_A mol:protein length:77 putative DNA binding protein  ali model follow..  14  7...............................ELDTRREIYKHIVK--SPGLHERQLAKELDVPLSTLVYHLHYLERRELIMMKSDERYARYYATKKLGARAKEV.......................... 77
58 -14.8003r0a_A mol:protein length:123 Putative transcriptional regulator  ali model follow..  10  25................................TKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQDGGGYVYIYKIYSKNQIR-----NIIQKIVQSWADRLGQELKEWEN 120
59 -14.8004l9n_A mol:protein length:145 MepR  ali model follow..  10  31.................................NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYQDTRRKNIGLTTSGIKLVEVFTSIFDEMEQ-EEENEQMKANLTKMLS 136
60 -14.8004l9t_A mol:protein length:145 MepR  ali model follow..  10  31.................................NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQ-EEENEQMKANLTKMLS 136
61 -14.8002fbi_A mol:protein length:142 probable transcriptional regulator  ali model follow..  15  41..........................................VIRILQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKDQRRVYVNLTEKGQQCFVSMSGDMEKNYQ-EEKLAQLLELLNELKK 139
62 -14.8004gcv_A mol:protein length:168 Putative transcription protein  ali model follow..  21  16...................................SLERVGEIMRDALQGLRRDEFSRSLDIAPNMLTRRLNALVEAGLLERQQRPLRYQYVPTAKGEDFRVVLMAFVA..................... 98
63 -14.7005e1w_A mol:protein length:180 Transcriptional regulator, MarR family  ali model follow..  9  56.......................................ILHELMCLGGESTPHTLARRIVFEPHSVSAIVSRMEKDGLIIKTDKKHMVRIKLSEKAIDTFYQAEEKVELSKTLTKLRNHTLPLTHKHTK 166
64 -14.7002f2e_A mol:protein length:146 PA1607  ali model follow..  17  27.......................................MLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVESGSHQEYRLTDKGRALFPLLVAIRQ..................... 98
65 -14.7004ld5_A mol:protein length:145 MepR  ali model follow..  10  31.................................NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQ-EEENEQMKANLTKMLS 136
66 -14.7002hgc_A mol:protein length:102 YjcQ protein  ali model follow..  14  2..................................NKDKLRYAILKEIFEGNTPLS-ENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDLGPELTEKGENYLKENGTWSKAYKTIKEIKDWIK........ 94
67 -14.7002fxa_A mol:protein length:207 Protease production regulatory protein hpr  ali model follow..  12  53..........................................ILWIALNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSNDKRNTYVQLTEEGTEVFWSLYHLFGKFPEVAEMMCMIRHIYGDD.. 161
68 -14.7003e6m_A mol:protein length:161 MarR family Transcriptional regulator  ali model follow..  16  58..........................................LLSSLYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSADQRKRTVVLTRKGKKKLAEIDKLQTCIEVLGEILKGKTD....... 160
69 -14.6001u2w_A mol:protein length:122 Cadmium efflux system accessory protein  ali model follow..  15  43..................................NRAKITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQI-----MMIALAHKKEVKVNV......... 122
70 -14.6004k2e_A mol:protein length:112 Transcriptional activator HlyU  ali model follow..  12  36..................................RRLQILCMLLD---NELSVGELSSRLELSQSALSQHLAWLRRDGLVNTRKEAQTVFYTLSSTEVKAM............................. 99
71 -14.6001r1t_A mol:protein length:122 Transcriptional repressor smtB  ali model follow..  7  47..................................NRLRLLSLLAR---SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVAL............................. 110
72 -14.6002nnn_A mol:protein length:140 Probable transcriptional regulator  ali model follow..  9  43..........................................ALVRLTGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSDDGRRLLVSLSPAGRAELE------AGLAAAREINRQALAPLSLQEQ 129
73 -14.6004fht_A mol:protein length:157 PcaV transcriptional regulator  ali model follow..  14  43..........................................VLNALEPGLDQRTVGERVGLDRSTIAEVVSRLGRRGLLDKVQDGRRSLLRLTDEGLRVHR------RLGVRIARMNQVFLAPLAADEQ 129
74 -14.6003deu_A mol:protein length:166 Transcriptional regulator slyA  ali model follow..  21  52...........................................IHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQSDRRAKRIKLTEKAEPLIAEMEEIELLIKLIAKLEHNIMELHSHD.. 156
75 -14.6003bdd_A mol:protein length:142 Regulatory protein MarR  ali model follow..  14  32..................................TRYSILQTLLK--DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKDNQREVLVWPTEQAREALIT-EESEQFLATLDKLLIGLQNL...... 140
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.