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Query: [S] COG3592 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEEETLLEQGYRKYRGADVDIYFNTNICAHSGNCVKGNAELFNLDRKPWIMPDNVPKEEAKRVIHTCPSGALQYIEKLast
1 -34.4004id8_A mol:protein length:69 Putative ferredoxin  ali model follow..  20  2...............SEMLTIHVDQDKCQGHARCKALAPELFDLDDYGNAVVPADLIDKAWLAKSNCPENAIDITED 69
2 -33.9001iqz_A mol:protein length:81 Ferredoxin  ali model follow..  10  2..................KYTIVDKETCIACGACGAAAPDIYDYDEDGIAEVPDILIDDMMDAFEGCPTDSIKVADE 71
3 -33.9001siz_A mol:protein length:66 Ferredoxin  ali model follow..  16  1.................AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQEDEELYNCAKEAMEACPVSAITIEE. 65
4 -33.6002z8q_A mol:protein length:66 Ferredoxin  ali model follow..  16  1.................AWKVSVDQDTCIGCAICASLCPDVFEMNDEGKAQEDEELYNCAKEAMEACPVSAITIEE. 65
5 -33.1001dax_A mol:protein length:64 FERREDOXIN I  ali model follow..  18  1.................ARKFYVDQDECIACESCVEIAPGAFAMDPEIEKDVEGASQEEVEEAMDTCPVQCIHWEDE 64
6 -32.7001rof_A mol:protein length:60 FERREDOXIN  ali model follow..  20  1..................MKVRVDADACIGCGVCENLCPDVFQLGDDGKAKVPETDLPCAKDAADSCPTGAISVEE. 60
7 -29.7001dwl_A mol:protein length:59 FERREDOXIN I  ali model follow..  21  1...................TIVIDHEECIGCESCVELCPEVFAMIDGE-VTAPDSTAECAQDAIDACPVEAISKE.. 59
8 -28.7001f2g_A mol:protein length:58 FERREDOXIN II  ali model follow..  14  2.....................IEVNDDCMACEACVEICPDVFEMNEEGDVINPDSDLDCVEEAIDSCPAEAIVRS.. 58
9 -16.3005t5i_G mol:protein length:82 Tungsten formylmethanofuran dehydrogenase subunit fwdG  ali model follow..  15  2.................AIGLKAYPELCHGCGNCVIACPIIMIVEDGVVNIKNPDLCGKCGTCVESCPVDAIRLEEL 81
10 -15.0002vkr_A mol:protein length:103 ZINC-CONTAINING FERREDOXIN  ali model follow..  14  37...................IVGVDFDLCIADGSCITACPNVFQWYDTPGHPASEKKADPINEQVNVCPVAAIDVKP. 102
11 -14.5001xer_A mol:protein length:103 FERREDOXIN  ali model follow..  14  37...................IVGVDFDLCIADGSCINACPNVFQWYDTPGHPASEKKADPVNEQVNVCPVAAIDVKP. 102
12 -14.0001bqx_A mol:protein length:77 PROTEIN (FERREDOXIN)  ali model follow..  12  3....................VITEPCIGTKCASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59
13 -13.9002wsc_C mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER  ali model follow..  10  3...................HSVKIYDTCIGCTQCVRACPDVLEMIPWGGCKAKQIASAPRTECESACPTDFLSVRVY 68
14 -13.8002fgo_A mol:protein length:82 Ferredoxin  ali model follow..  12  1....................SLKITDDCINCDVCEPECPGAISQGEEIYVIDPNLCTECVGHCQQVCPVDCIPLDDA 63
15 -13.8001clf_A mol:protein length:55 FERREDOXIN  ali model follow..  16  1....................AYKIADSCVSCGACASECPVNAISQGDSIFVIDADTCIDCGNCANVCPVGAPVQE.. 55
16 -13.6004kt0_C mol:protein length:81 Photosystem I iron-sulfur center  ali model follow..  10  3...................HSVKIYDTCIGCTQCVRACPDVLEMVPWDGCKAAQIASSPRTECETACPTDFLSIRVY 68
17 -13.5005zji_C mol:protein length:81 photosystem I subunit VII  ali model follow..  10  3...................HSVKIYDTCIGCTQCVRACPDVLEMIPWDGCKAKQIASAPRTECESACPTDFLSVRVY 68
18 -13.5001k0t_A mol:protein length:80 PSAC SUBUNIT OF PHOTOSYSTEM I  ali model follow..  10  2...................HSVKIYDTCIGCTQCVRACPDVLEMVPWDGCKAGQIASSPRTECETACPTDFLSIRVY 67
19 -13.4001jb0_C mol:protein length:80 PHOTOSYSTEM I IRON-SULFUR CENTER  ali model follow..  10  2...................HTVKIYDTCIGCTQCVRACPDVLEMVPWDGCKAGQIASSPRTECETACPTDFLSIRVY 67
20 -13.4005zgb_C mol:protein length:81 PsaC  ali model follow..  10  3...................HTVKIYDNCIGCTQCVRACPDVLEMVPWDGCKAGQMASAPRTECETACPTDFLSIRVY 68
21 -13.3001fdn_A mol:protein length:55 FERREDOXIN  ali model follow..  14  1....................AYVINEACISCGACEPECPVNAISSGDDRYVIDADTCIDCGACAGVCPVDAPVQA.. 55
22 -13.2001fca_A mol:protein length:55 FERREDOXIN  ali model follow..  15  1....................AYVINEACISCGACEPECPVDAISQGGSRYVIDADTCIDCGACAGVCPVDAPV.... 53
23 -13.0003exy_A mol:protein length:82 Ferredoxin  ali model follow..  10  1....................ALMITDECINCDGCEPECPGAISQGDETYVIEPSLCTECVGHCVEVCPVDCIIKDPS 63
24 -12.9001blu_A mol:protein length:82 FERREDOXIN  ali model follow..  10  1....................ALMITDECINCDVCEPECPGAISQGDETYVIEPSLCTECVGQCVEVCPVDCIIKDPS 63
25 -12.8001dur_A mol:protein length:55 2[4FE-4S] FERREDOXIN  ali model follow..  16  1....................AYVINDSCIACGACKPECP-VNCIQEGSIYAIDADSCIDCGSCASVCPVGAPNPED. 55
26 -12.7003eun_A mol:protein length:82 Ferredoxin  ali model follow..  12  1....................ALMITDECINCDVCEPECPGAISQGDETYVIEPSLCTECVGQCVEVCPVDAIIKDPS 63
27 -12.4002zvs_A mol:protein length:85 Uncharacterized ferredoxin-like protein yfhL  ali model follow..  17  1....................ALLITKKCINCDMCEPECPAISMGDHIYEINSDKVGHYETPTCQKVCPIPNTIVKDP 63
28 -12.3004z3w_E mol:protein length:179 Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein  ali model follow..  17  79....................FIIDGKEYDECGFCRASCP-FREPDSGLPLKCDLCDGEPEPLCVKWCLVGALSVTE. 137
29 -12.2005t5i_F mol:protein length:349 Tungsten formylmethanofuran dehydrogenase subunit fwdF  ali model follow..  12  263...................ELIIDQDTCQACETCVMVCPC--PGEKTTKLHKDERFCIYCGACERSCPVTAITVKRN 328
30 -11.9006cfw_N mol:protein length:139 NADH-plastoquinone oxidoreductase subunit  ali model follow..  18  38...................KLVYNVDKCVGCRMCVTVCPAFVYLPEIRKVTLWIGRCVMCKQCVDVCPTAALQMSDE 97
31 -11.9001jnr_B mol:protein length:150 adenylylsulfate reductase  ali model follow..  13  1..................MPSFVNPEKCDGCKACEYICP-TLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVRGY 67
32 -11.6001rgv_A mol:protein length:80 ferredoxin  ali model follow..  15  1....................ALYINDDCTACDACVEECPAITPGDPIYVIDPTKVGAFDEPQCRLVCPADCIPDNPD 63
33 -11.2003gyx_B mol:protein length:166 Adenylylsulfate Reductase  ali model follow..  15  2....................TYVDPSKCDGCKACMYICPNILDPEEMKAFNQEPEACWECYSCIKICPQGAITARPY 66
34 -10.9002vpw_B mol:protein length:195 NRFC PROTEIN  ali model follow..  14  75............SYQTKDGLVLVDPKKCIACGACIAACPDARYLHPAGYVSKCTFCAHRLEKCVETCPTYCRTFGD. 144
35 -10.5002fug_3 mol:protein length:783 NADH-quinone oxidoreductase chain 3  ali model follow..  22  174....................VILDRERCIHCKRCVRYFEEVPGDEVLDFIE-FGLPSGFSGNITDICPVGALL.... 236
36 -10.3001h98_A mol:protein length:78 FERREDOXIN  ali model follow..  14  2.....................HVICEPCIGVKDCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIYPEED 59
37 -10.2001bc6_A mol:protein length:77 7-FE FERREDOXIN  ali model follow..  15  1....................AYVITEPCIGTASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59
38 -9.9102fug_9 mol:protein length:182 NADH-quinone oxidoreductase chain 9  ali model follow..  16  49.......................GLEKCIGCSLCAAACPAYVEPAENDPENPVSAGERYAKVCEEACPTGAIVLGYD 118
39 -9.6705c4i_B mol:protein length:315 Oxalate oxidoreductase subunit delta  ali model follow..  14  255.....................IIDREACTECYTCWIYCPDSCITRTEEGPVFNMKYCKGCGLCTAVCPSGALTNVPE 310
40 -9.6001f5b_A mol:protein length:106 FERREDOXIN 1  ali model follow..  12  1....................AHVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
41 -9.5504v4c_B mol:protein length:274 Pyrogallol hydroxytransferase small subunit  ali model follow..  10  84............VYQREDGIVLIDPEKAKGKKELLDTCPGVMYWNEEENVAQDESWAPKMPRCAHNCGSFVYEFLKT 159
42 -9.5402fd2_A mol:protein length:106 FERREDOXIN  ali model follow..  12  1....................AFVVTDNCIKCKYCVEVCPVDAFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
43 -9.5401a6l_A mol:protein length:106 FERREDOXIN  ali model follow..  12  1....................AFVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
44 -9.5201b0v_A mol:protein length:106 PROTEIN (FERREDOXIN)  ali model follow..  12  1....................AFVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIHPDECNDCALCEPECPAQAIFSEDE 59
45 -9.5101ftc_A mol:protein length:106 FERREDOXIN  ali model follow..  12  1....................AFVVTDNCIKCKCCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
46 -9.5101g3o_A mol:protein length:106 7FE FERREDOXIN I  ali model follow..  12  1....................AFVVTDNCIKCKYCVEECPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
47 -9.4601ff2_A mol:protein length:106 FERREDOXIN I  ali model follow..  12  1....................AFVVTDNCIKCTDCVEVCPVDCFYEGPNFLVIHPDECIDDALCEPECPAQAIFSEDE 59
48 -9.4301d3w_A mol:protein length:106 FERREDOXIN 1  ali model follow..  12  1....................AFVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
49 -9.4301fd2_A mol:protein length:106 FERREDOXIN  ali model follow..  12  1....................AFVVTDNCIKCTDCVEVAPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
50 -9.4001b0t_A mol:protein length:106 PROTEIN (FERREDOXIN I)  ali model follow..  12  1....................AFVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
51 -9.3905xtb_B mol:protein length:176 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial  ali model follow..  11  73.......................GEERCIACKLCEAICPQAITIEAEPRADGSRRTTRYDIDCQEACPVDAIVEGPN 136
52 -9.3701frm_A mol:protein length:106 FERREDOXIN  ali model follow..  12  1....................AFVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIHPDECIDCALCAPECPAQAIFSEDE 59
53 -9.3501f5c_A mol:protein length:106 FERREDOXIN 1  ali model follow..  12  1....................AFVVTDNCIKCTDCVEVCPVDCHYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
54 -9.3501frk_A mol:protein length:106 FERREDOXIN  ali model follow..  14  1....................AFVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAQAIFSEDE 59
55 -9.3401fri_A mol:protein length:106 FERREDOXIN  ali model follow..  12  1....................AFVVTDNCIKCKYCVEVCPVNCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
56 -9.3301h0h_B mol:protein length:214 FORMATE DEHYDROGENASE SUBUNIT BETA  ali model follow..  12  101..................VLFTPKTKDLEDYESVISACP--KVAESNQMAKIDRITNGLRPACVTSCPTGAMNFGD. 165
57 -9.3205lc5_I mol:protein length:176 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial  ali model follow..  11  73.......................GEERCIACKLCEAVCPQAITIEAEPRADGSRRTTRYDIDCQEACPVDAIVEGPN 136
58 -9.3201g6b_A mol:protein length:106 7FE FERREDOXIN I  ali model follow..  12  1....................AFVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIHPDECIDCALCESECPAQAIFSEDE 59
59 -9.2701gao_A mol:protein length:106 FERREDOXIN I  ali model follow..  12  1....................AFVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIHPDECIDCASCEPECPAQAIFSEDE 59
60 -9.2601pc4_A mol:protein length:107 Ferredoxin I  ali model follow..  10  2....................AFVVTDNCIKCTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECAAQAIFSEDE 60
61 -9.2301frl_A mol:protein length:106 FERREDOXIN  ali model follow..  12  1....................AFVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIHPDSCIDCALCEPECPAQAIFSEDE 59
62 -9.2001kqf_B mol:protein length:294 FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRON-SULFUR SUBUNIT  ali model follow..  23  118............IIQYANGIVDFQSENCIGCGYCIAGCP--LNKEDNRVYKVDRVSVGQEPACVKTCPTGAIHFGTK 189
63 -9.0702v2k_A mol:protein length:105 FERREDOXIN  ali model follow..  11  5........................AEPCVDVKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 59
64 -9.0105gpn_b mol:protein length:212 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8  ali model follow..  11  109.......................GEERCIACKLCEAVCPQAITIEAEPRADGSRRTTRYDIDCQEACPVDAIVEGPN 172
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24