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Query: [K] COG3888 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLRDVLLRELKRARGLGIDQFQIEEMMGFSKSTVSEALKDLEEKGIIKRRTIGGKIKHVWLAEYYPYYDEKLLRIGCLRSTEYVKFVSVAKNYSESKGIDLIVRFYDDAISLMNDLSQGLLEFALAPIFTEIIYSISNRNSIILGAVASGGSGVYKNVNCNCGKILTSESSSMMILAREFAKTRKISEIAIFKDPRRAIKDYESFKAEYIVIWEPYASKIMGEKMASFSDVLDSFPCCGISVSENNRENRTLIEIVRLYKRSRFTAREDVIDIFAKSTSVSPKTAKASLENYIWDIKFYRSDLKKYLEFIGYPPIEEIIEKIYEEVLast
1 -53.4003un6_A mol:protein length:341 Hypothetical Protein SAOUHSC_00137  ali model follow..  14  5..............................ENLYFQGMKRLSIIVIIGIFIITGCDWQRTSKERSKNAQNQQVIKIGYLPITHSANLMMTKKSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMDDYHFGIPHYSTHYLLLEELRKQLKIKPGHFEMSPAEMPAALSEHRITGYSVAEPFGALGEGKTLKHGDDVIPDAYCCVLVLRGELQHKDVAQAFVQDYKKSGFNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYDLTIKPSGYQEITTLVK-LFNPPAYDDFVE.. 325
2 -51.7003e4r_A mol:protein length:324 Nitrate transport protein  ali model follow..  11  3...................................................SSSSGLVPRGSHQPALAAEPAQLRIGYQKAVS-SLVLAKQHRLLEQRRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVTILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDIYLSPANARAAFAAGQVDAWAIWDPWYSALTSARLLANGEGLGLTGGFFLSSRRYATWGPFVQQVMGTLNQALERDRAGSIKTLAQVSGLPPAVVERTLAHRPPVQPLSAQVIKAQQATADLFYAQRLLPKRVL.. 299
3 -49.9002x26_A mol:protein length:308 PERIPLASMIC ALIPHATIC SULPHONATES-BINDING PROTEIN  ali model follow..  11  1.....................................................................SPEALRIGYQKGSI-GMVLAKSHQLLEKRESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIYLTPADARAAFQQGNVDAWAIWDPYYSAALGVRVLKDGTDLNQTGSFYLAARPYAENGAFIQGVLATFSEATRSQREQSIALLAKTMGLPAPVIASYLDHRPPIKPVNAEVAALQQQTADLFYENRLVPKKVD.. 279
4 -49.5002de2_A mol:protein length:365 DIBENZOTHIOPHENE DESULFURIZATION ENZYME B  ali model follow..  8  2.......................................................TSRVDPANPGSELDSAIRDTLTYSNPVPNALLTASESGFLDAAGIELDVLSGQQGTVHFTYDQPAYTRFG--GEIPPLLSEGLRAPGRTRGFFVRDDSPITAAADLAGRRIGVSAGSWEARALLHTLEHGELGVDDVELVARGQAAVLASGDVDALYSWLPWAGELQARPVVDLGLDERNAYASVWTVSSGLQRPGLVQRLVDAAVDAARDHSDAVTSLHAANLGVSTGAVGQGFGAQRLVPRLDHDALALLERTQQFLLTNNLLQEPVA.. 347
5 -49.2003hn0_A mol:protein length:283 Nitrate transport protein  ali model follow..  11  1...................................................................GTEDTVIKVSVLRGPSVIAFADWLENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLPMINAANLYNKGIKIKLAGCPIWGTLYLVEKTPLKEPALYVFNGTTPDILTRYYLGRQRLDYPLAFNTAGEITQGILAGKVNRAVLGEPFLSIALRKDTADLNHLTDNDTLGFAQTAVVYTPEKYRIAFEDALRASCQRYPKETIHSLEEHGIFQGALTPKSIERCKIYYLSAIEAKDAVMGFLRLIEQYE......... 265
6 -45.3003uif_A mol:protein length:348 Sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA  ali model follow..  11  2...................................................................VEDLKVVRIASVATNVGGSASLVVNGAFPEEGIKVEWAMASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVALVVPKNSTAKSIKDLKGKKIALHRGRPWELAFSNLLQSEGLTFKDFNVNPQVGAAALASGTVDGFFSLFDSYILEDGKIIWSTKTAPVDWKLMGVWARNDFQNPEITQAIVTAYLKSVAQDENKETYIREYSNKIYPESVNRREYDQDNSPLYDVALQEHYRKAVAYAQASGLTRTQAD.. 300
7 -44.5002x7p_A mol:protein length:321 POSSIBLE THIAMINE BIOSYNTHESIS ENZYME  ali model follow..  9  2................................................................AGHHHQLPTLKVAYIPEHFSPLFFAQQQGYYKAHDLSIEFVKVPEGSRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDAVSTGSNRDDVTDAKQKRIGVSRGSGSYVMSFVLAHQLGVPSFDQFQKNLRDSVNLKDGVEGSDAFMWEYFTSKKYHEIKQIDQIYTPWSSWVVATSSDSAKSDVIKNFIDAVNQGIQEHVDEAIEYISSNLDYSAEDAKEWTKTVEFNSRIGKTWDTIVVKTKDTLKLAGVLAESDD.. 291
8 -43.5002i48_A mol:protein length:429 Bicarbonate transporter  ali model follow..  9  2.....................................HMAGNPPDPNAASTGTNPSPQAAGDISPEMMPETANIKLGYIPIVEAPLIIAQEKGFFAKYGMTVEVSKQANWASARDNVTIGSQGGGIHLITEGIITNGNKVPMYVLAQLITQGNGIAGFNKTNGRKFKAAPNVNQDFWIRYWFAAGGVDIDLLAVPPAETVQGMRNGTMDAFSTGDPWPYRIVGYMAGLTAQIWPYHPEEYLAIRADWKNPKATKALLKGIMEAQQKNRPEVVQIVSNYFNVPTTILESPFKG-QYTMGDGQPAIDDFQKGPLYWKDGIGNVSYPY.. 342
9 -42.7002g29_A mol:protein length:417 Nitrate transport protein nrtA  ali model follow..  10  1.......................................TSPTTTSTGTGTGSSTDQAISPLVEGENAPEVTTAKLGFIALTDAPLIIAKEKGFYAKYGMDVEVLKQASWGTTRDNLVLGSASGGIYLITMGTVTDGKPTPMYILARLNVNGQGIQAFAKVTDPKVAMTFGGTHDMWIRYWLAAGGMDFSTIVVPPAQMVANVKVNAMESFCVGEPWPLQTVGYQALTTGQLWKDHPEKAFGMRADWQNPKAAKALLMAVMEAQQENKEEMCQILSEWFKVPFEDIIDRSKGKYWVDNASYPYKSHDQWFLTENIRWGYLPASTD.. 353
10 -40.4003qsl_A mol:protein length:346 Putative exported protein  ali model follow..  9  2........................................SVTRRELLKLAGAAGAMSLAPAIVRAQKLEKAQIAVGGKPLIYYPLTIAEVKGFFKDEGLDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFAVSKKNLPGYKGPADLKGRKIGVTAGSSTNMVVNFFLAKHGLKASDVSFAGAGAVTALRSGQIDAISNTDPVVSMLETSGDIQKEIFGGNMPAGCLYAPQAFANPNTAQALTNAIVRADKAGADEIAKAVPEGYLLGDPAIGKSMEGLSPDGVIPEDGAATALKALAKAWTNEYTRRANEKY 343
11 -34.2002ozz_A mol:protein length:231 Hypothetical protein yhfZ  ali model follow..  7  19...........................................................................VCAMPPYTRLYEGLASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFG-DSDVERVDLSYHESLQRIVKGDVDAVIWNVVAENELTMLGPLTDDPRFLQATEAVVLTR---VDDYPMQQLLRAVVDKHALLAHQQRVVSGEQE................................................ 228
12 -31.4003ix1_A mol:protein length:302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding protein  ali model follow..  9  1...................................................................ALETVEVMLDWYPNAVHTLYVAIENGYFAEEGLDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASMFLAEQDFDSPADLVGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMD-ELGASIVSGRADAVVNHEYPVLKHEGHDISYFN--VPEYDELVLISNEAYESGEVLAAFWRAALKGYEENPDEALNVLLTNFPLIQEVEEESLSILLEKMENPNGPFESWEEVISWLDAHDWLEQPVV.. 292
13 -31.1004esw_A mol:protein length:342 Pyrimidine biosynthesis enzyme THI13  ali model follow..  8  1...............................................................GSHMSTNKITFLLNWEAAPYHIVYLANIKGYFKDENLDIAILEPSNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSCYLEGSGITSFQSLKGKRIGYV-GEFGKIQVDELTKHYGMTPDDYVAVR-NVAKYILEGTIDCGIGIECIQQVELEEALKEQGKDCCCFCTILYIANDKFENPQAVKKFLKAIKRATDAHPREAWAEYGNFKTMQTDLNTKKFQRCAYFSESLYNVHRDWRKVNNYGKRLDILPENYV.. 297
14 -31.0004h65_A mol:protein length:346 Pyrimidine precursor biosynthesis enzyme THI5  ali model follow..  10  2...................................................................STDKITFLLNWQPTPYHIIFLAQTKGYFKEQGLDMAILEPTNPSDVTELIGSGKVDMGLKAMIHTLAAKARGFPVTSVASLYLKGSGITDFQSLKGKKIGYV-GEFGKIQIDELTKHYGMKPEDYTAVR-NVAKYIIEGKIDAGIGIECMQQVELEEYLAKQGRPCCCFCTVLYICNDEFKNPEKVRKFLKAIKKATDADPVKAWSGYIDFKQLNNDLSYKQYQRCAYFSSSLYNVHRDWKKVTGYGKRLAILPPDYVSN 296
15 -31.0004h6d_F mol:protein length:346 Pyrimidine precursor biosynthesis enzyme THI5  ali model follow..  9  2...................................................................STDKITFLLNWQPTPYHIIFLAQTKGYFKEQGLDMAILEPTNPSDVTELIGSGKVDMGLKAMIHTLAAKARGFPVTSVASLLKGSGITKSFQSLKGKKIGYV-GEFGKIQIDELTKHYGMKPEDYTAVR-NVAKYIIEGKIDAGIGIECMQQVELEEYLAKQGRPCCCFCTVLYICNDEFKNPEKVRKFLKAIKKATDADPVKAWKEYIDFKQLNNDLSYKQYQRCAYFSSSLYNVHRDWKKVTGYGKRLAILPPDYVSN 296
16 -28.7004nmy_A mol:protein length:303 ABC-type transport system, extracellular solute-binding protein  ali model follow..  11  1................................................................SNASSKKVTMVLDWTPNTNHTLFVALDKGYYKEEGLDVEIVQ-PPESGAETLVATGKADFGISYQEQVTYAKTSEDPLPIKAVASPKEKNITTAKDFEGKTYGGWGSPSEEAVFKAVMKKNRADFNKLIVNTGQDDFFAAMKTVDFAWIFDAVKADLIGYDLVKDLDERLDYYTPLIISNETVDNPELAKKFLKATTKGYEKNPEESAKILVKHAEVDEKLALKSQEYLASKYKDDAPRWSVWNNYTSFLKEYKLIDKDMK.. 291
17 -20.6002czl_A mol:protein length:272 hypothetical protein TTHA1568  ali model follow..  11  2.......................................................................EALRLGFSPCPNDTFIFYALVHGRVESPVPLEPV-LEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRSGGALGRGVGPLVPLQALEGLRVAVPGRHTTAYFLLSLYAQGFVPVEVRY---DRILPMVAQGEVEAGLIIHESRFTYPRYGLVQVVDLGAWLPLGAILARRDLGEGRALDEAVRRSVAYALAHPEEALDYMRAHAELSDEVIWAHVHTYAFSLDVGEEGERAVARLFAEAEARGLAAPSPR.. 268
18 -20.3001zbm_A mol:protein length:280 hypothetical protein AF1704  ali model follow..  11  2.....................................................................GSHKIRVAHTPDADDAFMFYAMTHGKVDTWLEIEHV-IEDIETLNRKAFNAEYEVTAI---SAHAYALLDDKYRILSAGASVGDGAKSEISLDGKRIAVPGRYTTANLLLKLAVE---DFEPVEMPFDRIIQAVLDEEVDAGLLIHEGQITYADYGLKCVLDLWDWLPLGLNAIRRDLSVEEEFLRAMRESIAFAIENPDEAIEYAMKYSRLDRERAKRFAMMYDYTYNMPESVDAALKKLYEMAEAKGLIKM..... 266
19 -19.7005lv1_A mol:protein length:280 PtxB  ali model follow..  8  1...........................................................MSTKNAGPSADPDKLIVALIPDENAATVIQDNQGLKEAFDKEIELVVTTDYSSMIEAARNDRLDLAYFGPLSYVLAKAVSDIEPFAAIIGNTKKGVTSFDDIKGTTFALPASTSSRLFPELTLAENGLTKGKDFQSHDAVALAVQNGNAQAGGMACPILKSLKKKGVIDPSKV-------TIAQSSPIPQYPWTMR---------TLSPELKEKIRFTFLDLDSDKVLKPFNADGFASITDSDGIRKAGKLLGLDLSK.......... 269
20 -19.4002nxo_A mol:protein length:291 Hypothetical protein SCO4506  ali model follow..  10  1.................................................................SLDNSRTRPRVGHIQFLNCLPLYWGLARTGTLLDFEL---TKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCDGPVMSCPLDRLDGARVALGSTSRTSVRLAQLLLSERFGVQPDYYTCPPDLSLMMQEADAAVLIGDAALRANMIDGPRYGLDVHD-FVFAVWAARRDYREPVITRKVHEAFLASRNEEVEKVAEQAARWEAFDEDTLAKYFTTLDFR--FGAPQLEAVTEFARRVGPTTGFPADVK.. 277
21 -19.3005jvb_A mol:protein length:280 Phosphonate ABC transporter, periplasmic phosphonate-binding protein  ali model follow..  9  1...........................................................MNIQKSENKANPQKLVVALLPDESAATVIQNNKGLENKLNKDIELFVSTDYSSMIEVASKGRLDLAYFGPLSYVLAKTKSNIEPFAAVIGNAEAGINSYEKIEGKIMAYQASTSSHLIPKSMLKQKQLKAGENYEAHDAVAIAVANGKAQAGGLSKPIFTALIERGTIDKNKV-------IIAESKPFPQYPWTMR---------DLDSELKTQIQQAFLELEDKAILKPFKADAFTLVTDQDVVRNLGEVLELNFEQ.......... 269
22 -19.2005o2j_A mol:protein length:273 Probable phosphite transport system-binding protein PtxB  ali model follow..  8  2..................................................................ADADPDVLKVALLPDENASELIKRNQPLKEHLDKKVQLIVTTDYSSMIEAMRFGRIDLAYFGPLSYVMAKSKSDIEPFAAIIANVASGVNEYADLKGKRMAYRASTSSHLIPKTVLLETADLTGGQDYEQDAVAVNVANGNADAGGLSEVIFNHAAERGLIDPSKV-------VLGYSGEYPQYPWAMR---------NLSPELKTKVRDVFVGIDDPEVLRNFKAEAFAPITDADVIRNMGSLLGLDFAT.......... 264
23 -19.1003mst_A mol:protein length:244 Putative nitrate transport protein  ali model follow..  12  3..........................................................................................SDKIENLYFQGMDVGMPFSGPVSFPLLVIEEFRIHNICSETGKFDVVLDSITNMPKYGLK--DMYSILGDESSGRIYTLRGTLADFNARILAYYDKAQ--VINADGDTCIKMANEGYS-------ALVGNEISIGKSFRNRMKELGLDLPSCAMASTRRIDEVIEAYEQGIDFIKNNHERAAEIISKKSGYSEEVMKKIIGIYGHEVTKKRAERELYSRVVPELNDIEII....... 237
24 -19.1005lq5_A mol:protein length:282 Putative phosphonate binding protein for ABC transporter  ali model follow..  8  2.....................................................................NPKVLKVGAIPDQNQDVLDKRFNLFSKQLDVEVKYIPVINYIAAVTGFRTKDLDLVWFGGLSGVQARLQTPNSIVIAFVVNKNLEIKGLKKLKNLRFTFENSTSGRLMPEYFLNQAGVEIKHFK-SHDATIALVNSGAFDAGALNKQVWENNLKNNPKRTSNLTPEYVDYHWVAQGDLENREGFTKELKSVILNLDIKQKSHKQILDM.................................................. 246
25 -18.0003p7i_A mol:protein length:321 PhnD, subunit of alkylphosphonate ABC transporter  ali model follow..  9  2.................................................................GSEEQEKALNFGIISTESQQNLKPQWTPFLKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQLIVNKDSPINNLNDLLAKRNGDPNSTSGFLVPGYYVFAKNNISASDFKGHETNALAVANKQVDVATNNTENLDKLKTSKVIWKSPLIPGDP---IVWRKNL--SETTKDKIYDFFMNYGKTPEEKAVLFRASSDLQLVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLN 301
26 -17.8005ub3_A mol:protein length:280 Phosphate-binding protein  ali model follow..  7  2......................................................................SSVLVLGRISDDPAPLLDYVVPRMREVGIRRGEILMAPDARQMSSYLRRGRVDWVSETTGAAMLLEQRGSAHPLLMFFVRRDSPIHSLSQLRGHTLALASSTSGYLLPMLELLRNGIACDVLLSSKLNVAAFVHKHLIDVGALSNVDWDDERHMPPVFKRDFRIVHRTAPVPRAVEMVRTGMDPAVEQRLRVVL-ASDPKAGPALKRFFDTTDPTSRRRLQELSAGVQRVRDHVE...................... 280
27 -17.7004yah_X mol:protein length:279 D-methionine-binding lipoprotein MetQ  ali model follow..  10  1.........................................MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNT-SKKIKSLDELDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENDAQIALAVINTTYASTPAKDGIFVEDKESPYVNLIVTREDNKDAENVKKFVQAYQS------DEVYEAANKVFN............................................... 264
28 -17.7005me4_A mol:protein length:274 Probable phosphite transport system-binding protein HtxB  ali model follow..  6  2................................................................AEVVNGKLHLRFAIAPMRPTPSQTIKFKYLADQLGATYEIVSPESWAAISVAMTNGHVDVGWLGPWGYVLSNKKAGTEVLATIVGRADLPIKKWEDAKGLKLSLQGNTSGWLIPMAYFKSIGIDPASYFETFGQNESQIQHGLIDLGSDMDRGRNGMIEAGQIDPSKSKIVWESSKLPNDAISVPKDFDPALKARITEILTSLSEEKAQSLMGS----------GYNGFVKAKHSDYKVIEDAGRILGKLLE........... 268
29 -17.4002v25_A mol:protein length:259 MAJOR CELL-BINDING FACTOR  ali model follow..  11  1.........................................MVFRKSLLKLAVFALGACVAFSNANAAESKGQLIVGVKNDVPHYALLDQATG--EIKGFEVDVAK--NAKTRGPLLDNGSVDAVIATFT---ITPERKRIYNFIGLLVLKEKKYKSLADMKGANIGVAQAATTKKAIGEAAKKIGIDVKFSFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKK......................................................... 256
30 -17.2004la9_A mol:protein length:254 Glutamine ABC transporter permease and substrate binding protein protein  ali model follow..  10  1.........................................METMKKLFFALAMMLATVTAFLVAPSVKAETTVKIAS--DSSYAPFVDIMQEVAKINDWKLEMSYPG---AALQNLKAGQVDGIIAG-MTITDERKETFDFS-LTIATTKDSKLSDYSDLKGKAVGAKNGTAAQTWLQENQKKYGYTIKT-YSDGVHMFAALSSGNIAGAMDEVPAMKQGQDLAMNFPSISLPGGYGFAVMKGKNSTLVDGFNKALAEMKS-----NGDYDKILKKYGI............................................... 252
31 -17.1002i6e_A mol:protein length:301 Hypothetical protein  ali model follow..  10  1.........................................................MSLTNHHPSSTGPQHPYRAGWIHFTNVAPIL----SLELPPGVTA---ITGVPTQMNAALLSGEVDIANV---SAVEFIRHADTLAALPDFSVAVLGLFHTCPLPERRVALTSQSAMSVALLEVLLRQKGLSPVLERAEGTAESLLAAGYDGVLRIGDDALREWYGVTVTDLAQEWFDFTFAVWAYRKDNPPPAALLQAMREARRRGIGHLAEVSQRHAEKLGLPERVVQHYLWNFRYH--LEAPDRLGLREFADLAVPGHAELTFGAR. 290
32 -17.1004ntl_A mol:protein length:247 Lipoprotein, YaeC family  ali model follow..  7  1.................................................................GDQKEDKEITVAVQLES-SKDILEIAKKEAEKKGYKINIMEVSDNVAYNDAVQHDEADANFAQHQPFMEMFNKEKKADLVAVQPI-SKEYQDAKDLENAKVGIPSDPTNEGRALAILNANGVNITFESIDLLNLAKAYDEKDIAMVFCYPAYLEPATKDAILLEDKEASKHYALQVVTRKGEKDSEKIKVLKEAMTT------KEVAEYIKKNSK............................................... 240
33 -17.0001oyi_A mol:protein length:82 double-stranded RNA-binding protein  ali model follow..  20  14.SNAEIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS.................................................................................................................................................................................................................................................................................... 63
34 -16.6003k2d_A mol:protein length:237 ABC-type metal ion transport system, periplasmic component  ali model follow..  15  2...................................................................HMDTSKVKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQVEDRDYKLTIAGNT-SKQVKSVAALDGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVENDVALSIINTTYASSITPEKDGVFVEDKESPYVNLIVARQDNVQNENVQNFVKAYQT------EEVYTAAKEIFK............................................... 237
35 -16.6003tqw_A mol:protein length:240 Methionine-binding protein  ali model follow..  12  1.....................................................................SNAMVRVGTIAGPETQLMEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGKT-SKKITALTQLTGAKIAVPSDPSNEARALLLLEKAQLIQLKTHVTINATPMDIASNDVDLAAINTNYAIPASPSRDALLTEGPNSPYANVVAVREDDKNDPRLKQLVSAL------HSPAVLSAAKKIFG............................................... 234
36 -16.2001ggg_A mol:protein length:226 GLUTAMINE BINDING PROTEIN  ali model follow..  13  29.......................................................................................VDLWAAIAKELKLDYELKPMD---GIIPALQTKNVDLALAGITKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQ---FPNIDNAYMELGTNRADAVLHDTPFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRE-----NGTYNEIYKKWFGTEPK........................................... 226
37 -16.1003up9_A mol:protein length:245 Putative uncharacterized protein  ali model follow..  12  1.................................................................GSSSDVVTLTVGATPSPHAKILTYINDNLAADAGIKLDIVEYTDYVQPNTALNDGDLDANFYQTVPYLENAEKQFGYNFEAGEGI-SNKHKSLDELDGGTIGIISDTANQSRALELLATQGLNFDFREVEGPQLVRSL--DDFDYAVINGNFAQEGISGDALVVESPVDNPAVNVLVWKGDSKKVDAIAKLEKLL------HSDEVKQYIEKTWS............................................... 237
38 -15.9004kqp_A mol:protein length:232 Glutamine ABC transporter permease and substrate binding protein protein  ali model follow..  9  35.......................................................................................VDLLNAIAKNQGFKLKWNFIG---AAVDSVQSGHADGMMSGMSQVFDYGSPYYSSNLTIATSSTDDSIKSWKDLKGKTLGAKNGTASFDYLNAHAKEYGYTVKTF-TDATTMYSSLNNGSINALMDDEPVIKYAIKQGATPIKPIPDGQYGFAVKKGSNPELIEMFNNGLANLRA-----NGEYDKIIDKYLESD............................................. 231
39 -15.9004gvo_A mol:protein length:243 Lmo2349 protein  ali model follow..  10  1...............................................................SNAANQKVQTITVGTGTQFPNVCFLDENGKL---TGYDVELVK-MDFSNLLVSLGAGKVDIVAHQMEKSKEREKK-NNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAGQGSNDTANQLKTGRADATISTPFFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIID-----DGTLKKLSEKWLGAD............................................. 237
40 -15.8003gxa_A mol:protein length:275 Outer membrane lipoprotein GNA1946  ali model follow..  9  5.....................................................DSAPAASASAAADNGAAKKEIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQV-PGKLKSLEEVDGSTVSAPNDPSNFARVLVMLDELGWSKADIAENLKNIQLPRSRADVDFAVVNGNYAISSGMKLTEALFQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNS------DAFKAYAHKRFE............................................... 253
41 -15.8004ddd_A mol:protein length:327 Immunogenic protein  ali model follow..  10  1..............................................MAMGTLEAQTQGPGSMASSDDSLNREYILIGVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEYLTIVVKKSSNISVIDDIKGKRVNISPGTGVRVAMLKLLGEKGWTKKDFELKSSEQAQALCDNKIDVMVD--PNASILDDRLIDDLHAKYPYYQKDIISGGLYNDSPDIQTVSVKASLVTTTELSNDLAYKIVKSIATHLRELRSALKTLTVQDMAKSSITPMHDGAERYYKEIGAIK...... 321
42 -15.7004zv1_A mol:protein length:233 AncQR  ali model follow..  11  31.......................................................................................IDLAKAIAKKLGVKVEFKPMD---GIIPALQSGKIDVVIAGMTKQVDFSDPYFEAGQAIVVKKGNDSIKSLEDLKGKKVGVQLGSTSEQHVKKVAKDAGVKVKKF-DNFSEAFQELKSGRVDAVVTDNAYVKQNPNAGVKIVGETFSGEPYGIAVRKGNSELLEKINKALEEMKK-----DGTYDKIYEKWFG............................................... 226
43 -15.6004zef_A mol:protein length:251 Amino acid ABC transporter amino acid-binding/permease  ali model follow..  12  2.......................................................GENLYFQGMKKITPKKEKYVIAS--DSTFAPFVDLVKRAAELQGFTVEFKFIG---SAVQAVESGQADGMVAGMTKAFDFSVPYFDSGIQIAVKKGNDKIKSYDDLKGKKVGVKIGTESADFLEKNKKKYDYS-IKYLDTTDALYSALEIGEVDAMMDDYPVIGYGVAQNATPIPREKGGSYGFAVKKGQNPELLEMFNEGLKEMKR-----TGEYDKIIGTYVK............................................... 239
44 -15.6004xz6_A mol:protein length:339 Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein  ali model follow..  6  4.............................FREIAANDPGPTGRMKNMKTFTTALATGVLALCPLAALADSSDPIVIPIHNWSSQIVMSNVVGQIFEEMGVAVEFVTTDSQA-VYESVRLGDVTLEL-AFGASFRAALEKGGIVDVGDHDAVTPGLPDWKALNDKGRYLDGPVDWLKHGKERVEALGMNFEVINAGSAEIGAAEADKRPVVVFNWTPNPAVGPNPDALYDCGNPATGYLKKAAWEGMEAKWPDAYAVLTEMAKLVDVDEMEPDEAAEAWLEANEDVWRPWLDG................................... 333
45 -15.5004oen_A mol:protein length:223 Second substrate binding domain of putative amino acid ABC transporter  ali model follow..  7  30.......................................................................................MELIKAIAKDQGFEIEITNPG---AAISAVQAGQADGIIAG-MSVTDARKATFDFS-TILGVKESSNIASYEDLKGKTVGVKNGTASQTFLTENQSKYGYKIKTF-ADGSSMYDSLNTGAIDAVMDDEPVLKYSISQG-TPISGTPIGETAFAVKKGANPELIEMFNNGLANLKA-----NGEFQKILDKYLA............................................... 223
46 -15.5002o1m_A mol:protein length:258 Probable amino-acid ABC transporter extracellular-binding protein ytmK  ali model follow..  8  7..............................................................TTGAGQKKVQTITVGTGTQFPNICFIDEKGDL---TGYDVELIK-MEFSNLLVSLGQHKVDIVAHQMEKSKEREKK-NHFPLKITVLQNNDTIRGIEDLKGKRVITSATSNGALVLKKWNEDNGRPFEIAGQGANETANQLKSGRADATISTPFFQNKTSTIKEKTVGNVLSNAKVYFMFNKNEQTLSDDIDKALQEIID-----DGTLKRLSLKWLGDD............................................. 244
47 -15.5004q5t_A mol:protein length:257 Lipoprotein  ali model follow..  11  1.................................................................GQKNDKNTLTVGVMTMTDDKERWDKIEELLKKENIKLKFKEFTDYSQPNKALKNGEIDINSFQHYNFLNNWNKENKGDLVTVAET-KAKYSSAKEINGGQIAIPNDATNESRALYVLQDAGLTVKNIKSNPKNLQTARNLASVDAAVVNNSYAVPAFKTSLYKEKVNEGSKQWINIIAAQKNWKKSKKAAAIKKLIKAYHT--DAVKKVIKKTAK............................................... 250
48 -15.4004eq9_A mol:protein length:246 ABC transporter substrate-binding protein-amino acid transport  ali model follow..  8  1................................................................SNAAASKKEIIVAT--NGSPRPFIYEENG--ELTGYEIEVVR-TEWSGVFAGLDADRYNMAVNNLSEKYLYAAPIAQNPNVLVVKKDDSSIKSLDDIGGKSTEVVQATTSAKQLEAYNAEHTDNPTILKADFQQIMVRLSDGQFDYKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLA---QGQDELKSFVDKRIKELYKD-GTLEKLSKQFFGDTYLPAEADIK.................................... 246
49 -15.4001ii5_A mol:protein length:233 Slr1257 protein  ali model follow..  10  1....................................................................GSAMALKVGVVGNPPFVFYLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEG--IGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVDWANFY------ADVRETNNLTAAITLLQKKQVEAVMFDRPYTRQNPNLNLEVTEIRVSLEP-YGFVLKENSPLQKTINVEMLNLLY-----SRVIAEFTERWLGPGIE........................................... 230
50 -15.4004got_A mol:protein length:249 Methionine-binding lipoprotein metQ  ali model follow..  11  1..................................................................GESGKKEIVVAATKTP-HAEILKEAEPLLKEKGYTLKVKVLSDYKMYNKALADKEVDANYFQHIPYLMKENTDYKLVNAGAVHLEPFGIYSKT--DGATIILTNNVAEQGRMLAMLENAGLNLEFKKVAPELTAKAYENKEGDAVFINVNYAIQNPKKDAIEVESTKNNPYANIIAVRKGEEDSAKIKALMEVLHS------KKIKDFIEKKYD............................................... 241
51 -15.4004ib2_A mol:protein length:252 Putative Lipoprotein  ali model follow..  13  2..............................................................EEKGSSEDAKTIKVAASATP-HAEILEQAKSILKKEGYQLEVTVFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEKGTHLVDAGDI-PGTKKSLDEIEGDKIAVPNDTTNEARALLLLQDNGITVNDIEENPYNVQVARVTGETAYVVLNGNYALEADALAYEKSDSEAAKTYVNIIAVKEGNEKEEKIQALVKALKS------DEIKEYIEKTYD............................................... 245
52 -15.3004ote_A mol:protein length:241 Lipoprotein  ali model follow..  11  1...................................................................GKDDKKIVVGATLVP-GGELLEELKPLIKEKGYTLEVKNFDDYILPNEALNNGEIDANLFQHEPYLKEAVKAKGYKIMAGKKL-SYKIKSVDEFKGDTIAISNNPSSCSKNLRYLESIGLSPKDIIENPKGIQIPSSLPDVTAAFIDTTYAVPADAKKNGIYTAPINDEYANLLAFRTEDKDSEKIKVLQDVLTS------DKARSLIEEKYK............................................... 234
53 -15.2004qhq_A mol:protein length:241 Lipoprotein  ali model follow..  15  1........................................................................VIKVGTVAGPDSEVWQVVQKVAKEKEGLNVKVIEFNDYVQPNAALDSGDLDANSFQHQPYLDSQVKQRGYKIVSAGLT-SKKFKSLKDLQGAKLAVPNDPSNENRALLLLQTQGVTVLDIAENPKKLQLPRVLSDVDAAVINTNYALAAQPTKDAIALESLTSPYANLIAVRAKDKDQPWVKKLVKAYQS------PEVKEFIKKQFK............................................... 234
54 -15.2001p99_A mol:protein length:295 Hypothetical protein PG110  ali model follow..  11  8..............................................TTENLYFQGAHMGIQRPTSTGSNNDKKVTIGVASNDT---AWEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALST-SDKIKDVKKVDGAKVVIPNDVSNQARALKLLEAAGLTVKDITSNPKHLQTARALSDVDIAVINNGVATKADPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHS------KEAQKALQEDVK............................................... 267
55 -15.2003tmg_A mol:protein length:280 Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein (ProX)  ali model follow..  10  3..........................................................GSMCDEKKSSKNLKSVKIGYVNWGGETAATNVLKVVFEKMGYNAEIFSVTTSI-MYQYLASGKIDGTVVPTADKFYYEKLKTKFVDLGANYEGTI--GKGDKFKNKMIGIDAGAGTQIVTEQALNYYGLSKEYELVPSSSLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDDPD-GIESVHTLVRLGLENDDFDAYYVFDPLMDKNDKEPGKEYRNAVEFVEKNKEIVKTWVPE................................... 273
56 -15.1002pyy_A mol:protein length:228 Ionotropic glutamate receptor bacterial homologue  ali model follow..  14  28.......................................................................................IDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISIT---IFASGLQIMVRNLESGTGDIRSIDDLPGKVVATTAGSTAA----TYLREHHISVLEV-PKIEEAYKALQTKKADAVVFDAPYAANEGKGKVEIVGSILREES-YGIILPNNSPYRKPINQALLNLKE-----NGTYQSLYDKWFDPKNSL.......................................... 227
57 -14.9003n5l_A mol:protein length:310 Binding protein component of ABC phosphonate transporter  ali model follow..  9  1....................................................................GDQPVINFGIISTESSQNLKSIWEPFLQQTGYQVKAFFAPDYAGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQLIANKDSKIDSLEDMKSLTFGGDPNSTSGYLVYYVFAKNNVDPVKAFKSHEVNALAVANKQVDVATFNTEGMERLELTKVIWKSPLIPGDP---LVWRNNL--SDEQKNKLRDFFFKYGANAEQKKVLWSKFQASDDDQLELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRMA.. 299
58 -14.8001xs5_A mol:protein length:241 Membrane lipoprotein TpN32  ali model follow..  10  1.....................................................................KDETVGVGVLSEP-HARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVGNV-SRTYRHVSDFAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQNQVDGAVINGNYAIMASARRDGLAVEPDASAYANVLVVKRGNEADARVQAVLRALCG------GRVRTYLKERYK............................................... 233
59 -14.8001xt8_A mol:protein length:292 putative amino-acid transporter periplasmic solute-binding protein  ali model follow..  6  1..................................MKYLLPTAAAGLLLLAAQPAMAMASGGNSDSKTLNQNGVVRIGVFGDKP----FGYVDEKGNNQGYDIALAK--EAANRVEFLKSNKVDIILANFT---QTPQRAEQVDFLGVAVPKDSNITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLK---YDQNTETFAALMDKRGDALSHDNTLLFAWVKDHKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQ................................................................. 252
60 -14.8004z9n_A mol:protein length:328 Amino acid ABC transporter, periplasmic amino acid-binding protein  ali model follow..  7  1...........................................................MAADTLSDVKAKGFLQCGVNTGLL----FASPNDKGEWSGFDVDYCR--NAKERFTALQSGEVDVLIRNTTWTISRDTS-YDGQGFMINSKKLAGINSALQLSGASICVQAGTTTELNMADYFRANKMEYNPVFEKIEEANAAYDSGRCDAYTTDQSSLYGVRLADHVILPEIISKEPFGLTVRQGDARWADVVRWTHNALLNAEEYGITQANTKIGTDLGLDKDWVVKIIKGV-FERNIGSGSPLKIARGLNAQWNKGGL....... 315
61 -14.8004i62_A mol:protein length:269 Amino acid ABC transporter, periplasmic amino acid-binding protein, putative  ali model follow..  10  2..................................MNKMKKVLMTMFGLVMLPLLFACSNNQSAGIEAIKSKGKLVVAL--NPDFAPFIELAKAIATELGVELELSPMS---NVLASVQSGKADLAISGVSKTDERSKV-TAKNKLIVKKSDLATYQSVNDLAQKKVGAQKGSIQETMAKDLLQNSSLVS---LPKNGNLITDLKSGQVDAVIFEEPFVENNPDLAIADLNFEKEQDDSYAVAMK---KDSKELKEAVDKTIQKLKES-GELDKLIEDAFKASIE........................................... 268
62 -14.7004k3f_A mol:protein length:240 Probable TonB-dependent receptor  ali model follow..  10  1.....................................................................GAESLTVAATPVP-HAEILNVVKPLLAKEGVDLKIKEFTDYVQPNVQVSEKRLDANFFQHQPYLDEFNKAKGTDLVAVTGV-SSKYKKLDELSGATVVIPNDATNGGRALLLLDKAGVIKLKDNKSITATPKDIVDNQVDMALINTNYALEANPTKDALAIEGSDSPYVNILVARPDNKDSDAMQKLAKALHS------AEIKQFIQEKYK............................................... 233
63 -14.7004g4p_A mol:protein length:244 Amino acid ABC transporter, amino acid-binding/permease protein  ali model follow..  11  1...........................................................MGENLYFQGMEGKKYTIGTDLT------VDLLDAIAKDQDFEVDLKPLG---SAVQAIQSKQIDGMIAGMSKSFDFSDPYFDSGLQLAVKKGNDKIKSYDDLKGKTVAAKVGTESANFLEKNKEKYDYTIKN-FDDATGLYKALENGEADAIVDDYPVLGYAVKNG-LVGDKETGSSYGFAVKKGQNPELIKKFNAGLKNLKD................................................................. 221
64 -14.7002zzv_A mol:protein length:361 ABC transporter, solute-binding protein  ali model follow..  7  1......................................MKRVSRRAFLRRLGVGVAATAAFSPLAVAQARRYRWRIQTAWDAGTVGYSLFQERVKELTDGQLEVQPFPAGADMFDAVKTGVLDGMNPFTLDIARRAFAEQGLFYVGPVQHDKKPIRRFEDFKGVKLRVPGGMIAEVF-------AAAGASTVLLPGGEVYPALERGVIDAADFVGPAVNYNLGAKYIIMGPPETPAIHQPVDLMDFTINLNRWRSLPKPLQERFIAAVHEYSWIHYAGIQKANLEAWPKYRQAGVEVRLSNEDVRKFRRLAKWAKMDKYSREAFASQ 341
65 -14.6004c0r_A mol:protein length:248 PUTATIVE AMINO ACID BINDING PROTEIN  ali model follow..  11  2......................................................................DKTVTLAT--VGTTNPFSYEKKG--KLTGYDIEVAK-TEWTSIFSGLDSDKYQIGANNISANKYLYSNPTASNPLVLVVPKDSDIKSYNDIAGHSTQVVQGNTTVPMLQKFNKNHEVKLNFTSEDLAHQIRNVSDGKYDFKISAETIIKEQGLDNLKVIDLPSDQKPYVYFIFA---QDQKDLQKFVNKRLKKLYEN-GTLEKLSKKYLGGSYLPDKKDMK.................................... 240
66 -14.6002yjp_A mol:protein length:291 PUTATIVE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, AMINO ACID  ali model follow..  8  1.............................MGSSGHIDDDDKHMVGLTAAGGGSGDAQSSQSSGAATVAAEKGVIRIGVFGDKP----FGYVDANGKNQGFDVEIAK--EAANRVEYVRSGKVDLILANFT---QTPERAEAVDFLGVVSPKNKPITDMAQLKDQTLLVNKGTTADAFFTKSHPEVKLLK---FDQNTETFDALKDGRGVALAHDNALLWAWAKENEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKK................................................................. 253
67 -14.5004f3p_A mol:protein length:249 Glutamine-binding periplasmic protein  ali model follow..  12  2.......................................................AMGTLEAQTQGPGSMAKELVVGTDTS------LDLWAEIAKGAGWTYKIQPMD---GLIPALQTQNIDVALSGMTKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKPKEIRQ---FPNIDQAYLALEAGRVDAAMHDTPFVNNEGKGRVKVAGAPVSGDK-YGIGFPKGSPLVAKVNAELARMKA-----DGRYAKIYKKWFGSE............................................. 238
68 -14.5003mpk_A mol:protein length:267 Virulence sensor protein bvgS  ali model follow..  10  1..............................................MRGSGSLDFAHPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKV---VTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQELMSILNKALYSIS--NDELASIISRWRGSDGD........................................... 250
69 -14.4002ia4_A mol:protein length:287 Putative periplasmic binding transport protein  ali model follow..  8  2..............................AAPAAGSTLDKIAKNGVIV---VGHRESSVPFSYYDNQQKVVGYSQDYSNA-----IVEAVKKKLNKPDLQVKLIPITSQ-NRIPLLQNGTFDFECGSTTNNVERQKQ---VVGTRLLTKKGGDIKDFADLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRIIAKDHGDSFRTLESGRAVAFMMDDALLAGERAKNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQT-----SGEAEKWFDKWFKNP............................................. 250
70 -14.4003qax_A mol:protein length:268 Probable ABC transporter arginine-binding protein ArtJ  ali model follow..  11  1.........................................MIKQIGRFFRAFIFIMPLSLTSCESKIDRNRIWIVGT--NATYPPFIDLAKAISEKLGKQLEVREFA---ALILNLKKHRIDAILAGMSITPSRQKE-DEVQELMVVSKRSLETPVLPLTQYSSVAVQTGTYQE----HYLLSQPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKS-----EGVIQSLTKKWQLSEVAYEAAQVWG................................... 265
71 -14.4002yln_A mol:protein length:283 PUTATIVE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, AMINO ACID  ali model follow..  9  3...........................SSGHIDDDDKHMAAAGGSEGGSGASSAPAQSAISGSLIERINNKGTVTVGTEGT------VEVTRAVAEKLGVKVEFKETQ---SMMAGLKAGRFDVVANQVGLTSPERQATFDKS-AVLVAHNDSNIKSIADIKGVKTAQSLTSNYG----EKAKAAGAQLVPV-DGLAQSLTLIEQKRADATLNDELAVLDYLKKKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKA-----DGTLKKLGEQFFGKD............................................. 269
72 -14.4002reg_A mol:protein length:298 PUTATIVE GLYCINE BETAINE-BINDING ABC TRANSPORTER PROTEIN  ali model follow..  10  1.................................................................AEPESCGTVRFSDVGWTDITATTATATTILEALGYETDVKVLSVPV-TYTSLKNKDIDVFLPTMEADIAPYREDKSVETVRENLAGAK--AHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVESSVARAEKSGDPIVFLGWEPFKLTYLSGGDDVFGPNYGGATVHTNVRAGYTTECPNVDKLLQEIMGKILNDGEDPEKAAAAWLKDNPQSIEPWLSGVA--TKDGGDGLAAVKAALGL.............. 291
73 -14.4003h7m_A mol:protein length:234 Sensor protein  ali model follow..  9  2..............................................................SADAPRDRHRTIVVGG--DRDYPPYVELTRAIAEVMGMTVEFRL-GAWSEMFSALKSGRVDVLQGISWSQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVALHRDGIMHEYLAERGYGKDL---VLTPTPADALRLLAAGGCDYAVVAMVIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRK-----TGQYEAIRAKWLGVLE............................................ 233
74 -14.3003del_B mol:protein length:242 Arginine Binding Protein  ali model follow..  10  2..............................................................LKEGGDSNSEKFIVGT--NATYPPFIDLAREISNKLGKTLDVREFS---ALILNLKQHRIDAVITGMSKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQE----AYLQSLSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFTIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRK-----EGVLAELEQKWGLNNLE........................................... 236
75 -14.3003kzg_A mol:protein length:237 Arginine 3rd transport system periplasmic binding protein  ali model follow..  12  1.....................................................................MSLNLTIGT--SKFNPPFEVWSGNNSSLYGFDIDLMQ-YIFDDLFPALKNREVDLVIASMI---ITDERKKHFIF-QYITTVDSKISTFDDLHGKKIGVRKGTPYARQVLSENRNNQVIF---YELIQDMLLGLSNNQVDASLM-EPYAYKLIGKKYKLIGKKISIGEGYSIMAN---PDQFVLIKKINKILLEMEAD-GTYLRLYSEYFE............................................... 230
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.