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Query: [S] COG4818 Predicted membrane protein, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSYNTSLGLSENIVAALCYPVGWLSGLFFLLLERKNKFVRFHAMQSVLLFMPIALFIFLVAWIPTIGWFIADGAGMTAMLLILIPMYMAFRGSKFKIPIIGNIAYNFAYGELast
1 -6.2902e2f_A mol:protein length:41 Diapausin  ali model follow..  10  1.................AVRIGPCDQVCPRIVPERHECCRAHGRSG................................................................. 29
2 -5.7201qu0_A mol:protein length:191 LAMININ ALPHA2 CHAIN  ali model follow..  7  19AKAVGGFKVGLDLLVEFEFRTTRPTGVLLGISSQKMDGMGIEMIDEKLMFH............................................................ 69
3 -5.6702n2a_A mol:protein length:58 Receptor tyrosine-protein kinase erbB-2  ali model follow..  21  1.AEQRASPLTSIISAVVGILLVVVLGVVFILIKRRQQKIRKYTMRRLL............................................................... 48
4 -5.5804o6y_A mol:protein length:230 Probable transmembrane ascorbate ferrireductase 2  ali model follow..  13  116.SLHSWLGL----ACLFLFAFQWAAGFVTYWYPGGSRNSRWHVFLGISIYALALVTATT.................................................... 174
5 -5.5401c01_A mol:protein length:76 ANTIMICROBIAL PEPTIDE 1  ali model follow..  12  26IHQKGGYDFSYTGQTAALYNQAGCSGVAHTRFGSSARACNPFGWKSIFI.............................................................. 74
6 -5.5002mxw_A mol:protein length:92 RNA-binding protein 10  ali model follow..  13  18YQYDETSGYYYDPQTGLYYYYNAQSQQYLYWDGERRTYVPALEQSA................................................................. 69
7 -5.4303u9d_B mol:protein length:54 Thymosin beta-4, Chimeric protein  ali model follow..  19  28.....................................................................................LKKTETQEKNPLPSKETIEQEKQAGE 53
8 -5.3602xc8_A mol:protein length:146 GENE 22 PRODUCT  ali model follow..  13  43...EVSFDLTPDDTYPVEY--------LYLHMNVQTKKVSWSLCKAYLDGEGYCDYQGNERLIMYPVSV--TVFPNGTREGTIFLYEKEDREPDRKPPVIGEIGTPDIDE. 146
9 -5.3101kqf_C mol:protein length:217 FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, CYTOCHROME B556(FDN) SUBUNIT  ali model follow..  9  92.......................IVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLQVVRYSLLIHAAAGIILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKH 196
10 -5.2701vbo_A mol:protein length:149 artocarpin  ali model follow..  19  99LTFKTNKGRTFG--------YGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL..................................................... 149
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.