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Query: [S] COG5501 Predicted secreted protein, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLILALIPVTLTASLALAEPEKPNNPLADGTTWRDLKGDVVGEAAILDGSALFSVTAPYRANDAATVPVTIEQTDAAADPIESLKLVIDENPAPVAAEIRFGPAMAPLKFETRVRVNQYSNIRAIAETPRGIFMHGRFVKASGGCSAPATKDPVAALKDMGEMRLKLFGGKGEVQKARREAQIMIRHPNYSGLQRDQITQLFVSAKFITELVVKQGDELLFALDGGISISENPVFRFSYTDNGAPDFTVHAVDTDGNVFDRVLPKTPPALast
1 -51.7004uwq_B mol:protein length:136 SOXY PROTEIN  ali model follow..  21  1.................MRGSGSQGLEGEDLEHLEQALKEVFGKGFKDTPSDAVKLNMPAIAESGANVPAEVEVALP-KEQVRAIHLFADKNPTPHILAFM--PMKAEPYYATRVRLAETTAIRAVVETQDGLLLASASTRVTVGGCG.......................................................................................................................... 130
2 -51.7002oxg_Y mol:protein length:124 SoxY protein  ali model follow..  27  2..........................RGSGSSTVDELTAAFTGGAATG--EGGLTLTAPEIAENGNTVPIEVKA-----PGAVAIMLLAAGNPEPAVATFNFGPAAADQRAATRIRLAQTQDVIALAKMADGVVKAQTTVKVTIGGCG.......................................................................................................................... 117
3 -51.4002nnc_A mol:protein length:124 Sulfur covalently-binding protein  ali model follow..  18  2.....................GSWSEKAFSASKLDDAIAAKFGSLPIQESTA-IQIKAPEIAENGAFVPVTVATSIPG---ATNISIFTPANFSPMVASFDVLP-RMKPEVSLRMRMAKTENLVVVVQAGGKLYRAVREVKVTIGGCG.......................................................................................................................... 123
4 -46.9004uwq_C mol:protein length:108 SOXZ  ali model follow..  24  1................................................................................................................................................................MPFRTIARLNPAKPKAGEEFRLQVVAQHPNEPGTRRDA-EGKLIPAKYINLVEVYFEGEKVAEARPGPSTSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKLELA. 108
5 -44.3002ox5_Z mol:protein length:108 SoxZ protein  ali model follow..  20  1..............................................................................................................................................................ADDAKPRVKV--PSSAKAGETVTVKALISHKMESGQRKDA-DGKLIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTWYDDDGSVYEDVKPIAVA. 108
6 -28.4004bk8_A mol:protein length:124 DESULFOFERRODOXIN, FERROUS IRON-BINDING REGION  ali model follow..  19  16..........................................GEAISKAETHTPKIEAPEKVKADQPFQVRVSVPNEAAHSIRWIELYFYEEGRPFLGRVAFEPGYAEPDVTFTLKLKKSGVLYAISYCNHGLWEARKEIKV................................................................................................................................ 123
7 -19.7002amu_A mol:protein length:143 Putative superoxide reductase  ali model follow..  14  26......................................................VIEAPEKVKKDEKVQIVVTVPNTTEHHIRWIKVFFQPDGDPYVQGPNIGAVYTEPTVTTVVKLNRSGTIIALSYCNHGLWESSQKITVE............................................................................................................................... 136
8 -13.9004bff_A mol:protein length:125 SUPEROXIDE REDUCTASE  ali model follow..  2.......................................ELFQTADWKKEKHVPVIEVLRAEGGVVEVKVSVGKPNTTEHHIAWIELVFQPEGSKFVDGPNTSGVYTDPVAVFAFKAEKSGKLTAFSYCNHGLWMGEATLSL................................................................................................................................ 124
9 -12.4002hvb_A mol:protein length:124 Superoxide reductase  ali model follow..  5..................................................................................................................................................AKVIGMLKETIRSGDWKGEKHVPVIEYEREGDLVKVEVSVPHPNT-------------PEHHIAWIELYFHPEGGQFPILHSDPLTEPRAVFFFKTSKKGKLYALSYCNIHGLWENEVQLE... 124
10 -12.3004d7p_A mol:protein length:111 SUPEROXIDE REDUCTASE  ali model follow..  12  13..................................................ERTKEKHVPEMKLSGNHVDIRCGAPATEKHYIGTIRLFGITKVTLELGCQQIWPGLGEPVASFRVDLEKYKGLLAVAYCNHGCWENYMEL.................................................................................................................................. 111
11 -11.7001do6_A mol:protein length:124 SUPEROXIDE REDUCTASE  ali model follow..  8................................................SGDWKGEKHVPEYEREGELVKVKVQVPNTTEHHIRYIELYFLPEHGESVNGPNTSDVYTEPIAYFVLKTKKKGKLYALSYCNHGLWENEVTLE................................................................................................................................. 124
12 -10.9004bv1_A mol:protein length:109 NEQ011  ali model follow..  13  1...............................................MIKTEYNPKHSPEIEKEGELYKITIEVPNEPSHHIQWVDLYFEPEGK-HIARIEFKAHGEEPKAIVYAKLEGKGKLIAISYCTHGLWKTEKEL.................................................................................................................................. 109
13 -9.2703pdd_A mol:protein length:190 Glycoside hydrolase, family 9  ali model follow..  12  2.....................................................VTIDSPV---AGERFDINISATVKSKTPVSKVEFYNGDTLI--------SDTTAPYTAKITGAAVGAYNLKAVAVLSDGRRIESPVTPVLVKVIVKPTVKLTAPKSN-----------VVAYGNEFLKITATASDSDGK----------------ISRVDFLVDGEVI-------SDREAPYEYEWKAVEGNHEISVIAYDDDDAA-PDSVKIFVKQ 180
14 -9.0104aw7_A mol:protein length:591 GH86A BETA-PORPHYRANASE  ali model follow..  11  380..............................................AFKDGGRLYIALDNLDDNPQTVYLNNKNSWKDVSNVTKRSLYVNYNAGIEYTEQNVPSMPESISIVPNLVADVSSSAFTNSIIRNKYYSSEYLKPISAG--SSLSFPFTGIESGSGRASLRMSIGRPVSASKKPVVKI-------NGTAV--------------SVPDNWKGYGQSNRNIFFGMIEVP-FDIQLLKNGDNNVDITFSDGGGHVSSMILQV.... 579

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.