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Query: [S] COG5572 Predicted integral membrane protein, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRGHDGYIVSSSPETGGLRGGEILFADHCNLGHPRNELSHDRAAQGRLGANPPGESLMTRTATTAALAAAIALSAGVSIAAADEHKAGAQTEKCYGVSKAGENDCKAGAGTSCAGTSKVDYQGDAWKMVKKGTCVTIKTPKGMGSLTPKALast
1 -7.0703brn_A mol:protein length:157 Lipocalin  ali model follow..  8  28......YLRKTTKPGT-----------ECAYVLVPQNTLSEGQSTSFTYGKLQNGQMIQLTATVTVNGDKIEVTGAGQDLSGTTTVLFSDYRSC-DVMRGPDGNYNLQSYGCCDTKFAQVAGGRPIHHTWQTYCPPL............. 156
2 -6.6803ehe_A mol:protein length:313 UDP-glucose 4-epimerase (GalE-1)  ali model follow..  15  6VTGGAGFIGSHVVDK--SESNEIVVIDNLSSGNEEFVNEAARLVKADLAADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHP.................... 134
3 -6.6504if6_A mol:protein length:281 NAD-dependent protein deacetylase sirtuin-1  ali model follow..  12  32.....GAGVSVSCGIPDFRSRDGIYADFPDLPDPQAMFDIEYFRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRI-HGSFATASCLICKYKVDCEAVRGDIFNQVVPRCPRCPADEPLAIMKP.. 180
4 -6.6103qt1_I mol:protein length:133 DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerase III subunit RPC10  ali model follow..  14  5.........SSGLVPRGSHMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDREC--------PKCHSRENVFFQLQIRSADEPMTTFY----KCVNCG............ 121
5 -6.6002los_A mol:protein length:121 Transmembrane protein 14C  ali model follow..  20  34..GIIGYVKAGSVPSAGLLFGSLAGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVA......................................................................... 110
6 -6.5004i5i_A mol:protein length:287 NAD-dependent protein deacetylase sirtuin-1  ali model follow..  12  24.....GAGVSVSCGIPDFRSRDGIYADFPDLPDPQAMFDIEYFRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRI-HGSFATASCLICKYKVDCEAVRGDIFNQVVPRCPRCPADEPLAIMKP.. 172
7 -6.4904ljn_A mol:protein length:136 Histone acetyltransferase KAT6A  ali model follow..  16  38....................EELISCADCGNSGHPSCLKFSPELTVRVKALRWQ-----------------CIECKTCSSCRDQGKNADNMLFC--------DSCDRGFHMECCDPPLTRMPKGMW------ICQICRPRKKGRKLLQK. 135
8 -6.4705abq_A mol:protein length:331 VERSATILE PEROXIDASE  ali model follow..  14  47...HDCIGFSPTLGGGGC-DGSIIAFSDIETNFPAN--------AGIDEIVEAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIP----------FFLGRPDAVKASPDHLVPEPFDSVTSILARMGDAGFSPVLLASHSIAA..... 173
9 -6.4203h0g_I mol:protein length:113 DNA-directed RNA polymerase II subunit RPB9  ali model follow..  15  2....................SNFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKEC--------PRCHQHEAVFYQTHSRRGDTMMTLIY----VCVHCG............ 107
10 -6.3704blk_A mol:protein length:332 VERSATILE PEROXIDASE I  ali model follow..  16  48...HDAIGFSPTLGGGGA-DGSIITFDTIETNFPAN--------AGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIP----------FFLGRPDAVAASPDHLVPEPFDSVDTILARMGDAGFSAVLLASHSIAA..... 174
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.