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Query: [R] KOG3116 Predicted C3H1-type Zn-finger protein, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQCRNMSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKRELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRTKPSVDDLDGSDDDDEEERPDATNGKAEVEKRSKKSKRKHRSKSDSESDSEASVFETDSDGSSGESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRKERRRRYSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKRRLast
1 -9.3101cl4_A mol:protein length:60 PROTEIN (GAG POLYPROTEIN)  ali model follow..  21  19..........................................................................................EHAHNNAEPKVPGLCPRCKRGKHWANECKSKTDNQGNP........................................................................................................................................................ 56
2 -8.5204wse_A mol:protein length:584 Putative poly(A) polymerase catalytic subunit  ali model follow..  11  433................................................................................................................EFRTNCTGNTISFTRMNRLRLLEKRKQGKQTSFVYTPEDFFKKDLETQAKLDPSKARFKNTSGNKIMVPKYLLFKIDNNGNIEDNIHSEEAEISEKEETSGGSSISTDKSFEESPNSSPNSSPNNSLNNSIDISTNNYDDRSENSLDSLTSD................ 584
3 -8.3403nyb_B mol:protein length:83 Protein AIR2  ali model follow..  16  36...........................................................................................KAKPKVLPFHTIYCYNCGGKGHFGDDCKEKRSSRVPNEDGSAFTGSNL............................................................................................................................................. 83
4 -8.2801u6p_A mol:protein length:56 Gag polyprotein  ali model follow..  18  1...............................................................................ATVVSGQKQDRQGGERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRPQTSL.................................................................................................................................................. 55
5 -8.2705o9z_I mol:protein length:312 Pre-mRNA-splicing factor 38A  ali model follow..  17  185.........................................................................................................................................................EEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPTLRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHRHRSHSKSPERSKKSHKKSRRGN 311
6 -7.7602cqf_A mol:protein length:63 RNA-binding protein LIN-28  ali model follow..  35  1...............................................................................................GSSGSSGDRCYNCGGLDHHAKECKLPPQ............................................................................................................................................................. 28
7 -7.7402li8_A mol:protein length:74 Protein lin-28 homolog A  ali model follow..  23  16.............................................................................................SMQKRRSKGDRCYNCGGLDHHAKECKLPPQ............................................................................................................................................................. 45
8 -7.6902ysa_A mol:protein length:55 Retinoblastoma-binding protein 6  ali model follow..  27  5...................................................................................................SSGYTCFRCGKPGHYIKNC---------PTNGDKNFESGPRIKKST....................................................................................................................................... 41
9 -7.5201dsv_A mol:protein length:31 NUCLEIC ACID BINDING PROTEIN P14  ali model follow..  33  5........................................................................................................CPRCKKGYHWKSECKSKFDKDGNP........................................................................................................................................................ 28
10 -7.3802ec7_A mol:protein length:49 Gag polyprotein (Pr55Gag)  ali model follow..  22  1................................................................................................AQQRKVIRCWNCGKEGHSARQCRAPRR............................................................................................................................................................. 27
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.