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Query: [C] KOG4631 NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit, from VFDB

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGGGHHEPFKIPNYSIYSNFRDFPQLAQHEKRLAQIGLKDPWIRNYVYLYDRKYPHVVGQWAHFKKLILPGWKAGVAFTAALIFVEEAYQYKTHGTTSWDGHHLast
1 -49.9006g2j_k mol:protein length:104 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3  ali model follow..  26  11HEHGHHGKMELPDYRQWKI--EGTPLETVQKKLAARGLRDPWARNEAWRYMGGF----AGNITFPSVILKGFKWGFAAFVVALGAEYFLDSQNGDKKHH.... 104
2 -49.6005gup_Z mol:protein length:98 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3  ali model follow..  24  1MAHGHHSKMELPDYKQWKI--EGTPLETVQEKLAARGLRDPWGRNEAWRYSGGF----ANNVSFVGALLKGFKWGFAAFVVAVGAEYYLESQNKDKKHH.... 98
3 -46.6005lnk_n mol:protein length:97 Mitochondrial complex I, B12 subunit  ali model follow..  24  5.GHEHGPSMELPDYKQWKI--EGTPLETVQEKLAARGLRDPWGRNEAWRYMGGFANNVS----FVGALLKGFKWGFAAFVVAVGAEYYLESQKKDKKHH.... 97
4 -44.3005xtc_Z mol:protein length:80 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3  ali model follow..  26  1....GHHKMELPDYRQWKI--EGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGF----AKSVSFSDVFFKGFKWGFAAFVVAVGAEYYLE............. 80
5 -29.7006gcs_c mol:protein length:60 NB2M SUBUNIT  ali model follow..  25  2..................................APQLKDPWARREAWRYQTNFTR-----ANRFKGAAPGFGIAVVAFGAYLAAEKFLFEKKDDHHH..... 60
6 -8.9005doq_B mol:protein length:342 Bd-type quinol oxidase subunit II  ali model follow..  14  26FGAG-----------FFSVYSHWANQQHILHRIIQRYLSPVWEVTNVFLV--FFVGIVGFFPKTAYYYGSILLVPASIAIVLLAIRGSYYAFHTYGETERN.. 114
7 -8.4403i3j_A mol:protein length:124 Histone acetyltransferase p300  ali model follow..  20  48.........GIPDY--FDIVKSPMDLSTIKRKLDTGQYQEPWMFNNAWLYNRKTSRVYKYCSKLSEVFEQEID.............................. 117
8 -8.3705xxh_A mol:protein length:133 CREB-binding protein  ali model follow..  20  51.........GIPDY--FDIVKNPMDLSTIKRKLDTGQYQEPWMFNNAWLYNRKTSRVYKFCSKLAEVFEQEID.............................. 120
9 -8.2001jsp_B mol:protein length:121 CREB-BINDING PROTEIN  ali model follow..  20  45.........GIPDY--FDIVKNPMDLSTIKRKLDTGQYQEPWMFNNAWLYNRKTSRVYKFCSKLAEVFEQEID.............................. 114
10 -8.1705ktw_A mol:protein length:114 CREB-binding protein  ali model follow..  20  39.........GIPDY--FDIVKNPMDLSTIKRKLDTGQYQEPWMFNNAWLYNRKTSRVYKFCSKLAEVFEQEID.............................. 108
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.