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Query: [E] COG0006 Xaa-Pro aminopeptidase, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNQNPIKRLQDSLVERALDAFLIEKDEDISYFLQDQARSGVLLITRDEAVLFVSPLDKDLYARIQDVVLVSYSKSVDQELGSYIENTGLKTIGFDSEYTPYGIAQKRMNSGYAFSPQSLVAEKLRCVKSTEEIQKMTRAAEIGSAGYDFVLAALRPGITEKELVRMLHVFWANLGIEKVSFPPIIAFGENAAFPHAIPTNRSLKKGDVVLIDIGVCYEGYCSDMTRTVAFGATPEQQLLDGYVAVAEAQRAAIEFCRAGVPCRDVHKEAVRILRAHGMEKAFIHGLGHGVGREVHEYPRLSPFSDATLQLNMAVTVEPGVYFPGVGGIRIEDTIMIGVNENLNLTNRKVSSEIIIILast
1 -84.700PF00557.24; YOD1_SCHPO/228-435; Metallopeptidase family M24  ali follow..  38  1.....................................................................................................................................DIMSRVNIATVAAIRSVQPCIKPGITEKELAEVINMLFVY-GGLPVQESPIVLFGERAAMPHGGPSNRRLKKSEFVLMDVGTTLFGYHSDCTRTVLPGQKMTERMEKLWNLVYDAQTAGIQMLSSNTSCAEVDLAARKVIKDAGYGEYFIHRLGHGLGLEEHEQTYLNPANKGPVQKGNVFTVEPGIYIPDEIGIRIEDAVLASD.................. 208
2 -22.200PF01321.18; Y4TL_SINFN/18-162; Creatinase/Prolidase N-terminal domain  ali follow..  12  1....RLNAVKLEMGRLEIDALIVGSSADITYLTGYTAQALVISSNDEEPTFILRRQDAPAAIHQTEALIGNPDKDGYDAVVDFLNERDGRGVGVQLGYLSVRSAEKFKTPSARIVDCTHSVAWIRMI..................................................................................................................................................................................................................................... 145
3 -11.300PF16189.5; R6AXD3_9BACT/152-308; Creatinase/Prolidase N-terminal domain  ali follow..  16  23..ASKISRIRTALRQRHADGMLISALDDIAWTLNLRGTDSYLLISSQQVSLYVDSAKINDEVKA-YLTENGILLYPYNKVAEGLERYSEYNILLDGDETSYFLWKTV--KCKEIIAGNSPVPAMKAQKNDRE................................................................................................................................................................................................................................ 157
4 -6.780PF01522.21; CDA1_YEAST/102-222; Polysaccharide deacetylase  ali follow..  14  1.............................................................................................................................................................................................................................DDVTSCFKLSQTFDDGPAPATEALLKKLRQRTTFFVLGINTVNYPDIYEHILER-----------GHLIGTHTWSHEFLPSLSNEEIVAQIEWSIWPKYFRPPYGAIDNRVRAIVKQFGLTVV............ 121
5 -6.660PF12388.8; H8MF84_CORCM/49-254; Dual-action HEIGH metallo-peptidase  ali follow..  16  67.............................................................................................................................................................................................................................NEQGLRLTFRGPTTGCTANISAETTTGTGGQAGFPSNGMPYGVFYITGLDSYSADVNEHVITHELGHAIGFR-HS............................................................ 140
6 -6.540PF02031.16; SNPA_STRCO/80-212; Streptomyces extracellular neutral proteinase (M7) family  ali follow..  16  1................................................................................................................................................................................................................................AVTVYYSATNAPSFRSQISRSAQIWNSSVSNVRLAESSSGADFLDYRQNQQYDSTRVTAHETGHVLGLP-DHYSG......................................................... 98
7 -6.540PF13583.6; Q3BQ26_XANC5/186-409; Metallo-peptidase family M12B Reprolysin-like  ali follow..  12  8.............................................................................................................................LVGYTPGLVRELGSVDAVNTRINYLVAVTNRAYSDSQVNGRLRLI----GTQQVNYT-------DSTTDDAALNDLTEASGTSSLAALHSTRDTQGADLVALLRPYRANQGACGVAW--LNGGGLQSYNVNMQGSGYAAVSDGTDEEAGNYCEDITFAHEIGHNLGLA-HDKAD-SGPGAFTYAYGWRQTLDEGSF................................... 188
8 -6.380PF00359.22; Q9KMS5_VIBCH/6-152; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2  ali follow..  17  4................................................................................................................................ENNSIQLQAKANNWREAIKIGTDMLIASGAITPAYHEAIIASVEQLG-------PYICIAPNLALPHARPENGVLRTAALVTLQEPIYFEGEDEPVDVLITLAGSSSDELMEVTQVLDDENSATGVDLDKLRRCRDKQQVYA...................................................................................... 143
9 -5.560PF00349.21; Q5KM78_CRYNJ/7-206; Hexokinase  ali follow..  9  1....................................................................................................................................CKQFEPYFILDDAKLVDIVK---------HFRKEMEEGLASYGKDMAMIPTFV-----TGVPDGT------EEGVFLALDLG----GTNLRVCLILLQGHNQFKIKQQKYKVSEELKTGQARVLFDYIAESVDNFLTEVESHEDIAIPATGEPMHLGFTFSF-------PVEQTAIDAGKLLTWTKGFNTKNAIGMHVRCSALVNDTVGTLLSRS......... 199
10 -5.530PF02424.15; C5BM31_TERTT/32-314; ApbE family  ali follow..  13  28....................................................................................................................MRRLDRELSPWIESSELATLNRLAAKAPQKISSEMLFL--------VDKSLYFSHLTHGAFDITFASVGWF---DYREKKQPSEAQRSAHDNVRIDLGGIAKGYAVDRVAQLLENAGVRNATISAGGDSQIVGDKRGKPWIIGIKAILLPLENTAISTSGDYERYFIHIINPRTGKSVEGVVSVTILGPRGSDTDPMSTS----------------FVLGVEKGLALVNSLANFECII.. 283
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.