current user: public

If you have questions about the server, please let us know.

Query: [J] COG0009 Putative translation factor (SUA5), from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .
# Score Template Links and tools%idFirst MKTKRWFVDVTDELSTNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPDHPLALALIRESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGGPTGIGVESTVLSCADDIPVLLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGSPERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGRVIRLast
1 -82.000PF01300.18; Q6AL59_DESPS/27-203; Telomere recombination  ali follow..  36  1.........................DVIRRGGIVAFPTETSYGLAVDPYNVEAIERLYSLKGRHRSKPLLLLVANHAQLLDCVCAIPPLYKPLIARFWPGPLTLIFQAKET-IPAILTGGSKTIAIRRSPHPVAQFFVESAGIPLTATSANFSQKKPALTAQDCLHMFGDLVDYIIDDGQRGLNGFSTILAVKKEGLIVIREG............................................................................................................................................... 177
2 -40.100PF03481.13; R5ALB5_9CLOT/198-340; Putative GTP-binding controlling metal-binding  ali follow..  40  1............................................................................................................................................................................................................ITREMLSAVIGEVQVARSPLREGETVASPGMKYKHYAPKADVIVIVGTPENVCELYNFAEMQGKSVEIAATLQTKGFYKGKKYAILGDRNHPETLCASLFSSLRSMDE-HADMILAEGIPTDNAGLAYMNRLLRAAG..... 143
3 -7.080PF01310.18; CAP8_ADE02/3-223; Adenovirus hexon associated protein, protein VIII  ali follow..  16  3...................................IPTPYMWSYQPQMGLAAGAAQDYSTR--SAGPHMISRVNGIRAHRNRILLEQAAITTLNPRSWPAPTTVVLPRDAQAEVQMTNSGAQLAGVRSPGQGITHLKIRGRGIQLNDESVSSSLGLRPDGTFQ------------IGGAGRSSFTPRQAILTLQTSSSEPRSGGIGTLQFIEEFVPSVYFNPFSG------PPGHYPDQFIP........................................................................................................ 212
4 -6.810PF17636.2; UL21A_HCMVM/1-123; Viral Unique Long protein 21a  ali follow..  16  2.............................GGSPVPQLTTVTQGLMPSVYAPRARRRLFQNHIHPEQRRVLVGEGDEEMLPDLPMEIDIVIDRPPQQPLPNPLVLLLDDVPPHVPGFAPYRVPRPHPMIPEE....................................................................................................................................................................................................................... 118
5 -6.160PF05990.12; Q92PT3_RHIME/95-324; Alpha/beta hydrolase of unknown function (DUF900 topsan)  ali follow..  14  7..................KWLNTHVRKSPDGSVLVF----IHGFNNH---EDAVFRFAQII--PSRGSLLAYGYDRESTNYTRNAVERLFQYLARDPEVKEVSILAHSMGNWL---ALESLRQMAIRNDGLPAKFRNV------LAAPDVDVD-----GSQIADMGKQRPRFTLFVSRDDRALAVSRRVWGNVS------RLGAIDPEQSPYKEELAANGITVVDLTKIKAGDNLHHTKFAESPEIV................................................................................................... 224
6 -5.800PF01026.21; Y454_HAEIN/4-256; TatD related DNase  ali follow..  16  72.................PYDAERLLRLAQDPKVIAI--EIGLDYYYSADNKAAQQAVFGSQANQLDKPVIIHTRSADTIAMLRQHRAEKCGGVIHCFCSGIVTF-------------AEAIREVIRYVPME----RLLVETDSPYLAPVPYRGKENQPAYTREVCEYVAT-----------GVSAEAFAQITTQNFERLFK................................................................................................................................................. 252
7 -5.460PF02624.16; J0S380_9EURY/71-377; YcaO cyclodehydratase, ATP-ad Mg2+-binding  ali follow..  15  70...........................LLNDEEILVPSNAVFGLASGNVIEEAVHALLEVIER---DALSRAERRHSMGTRLSVGETGSVREILDLY-PTVAAAADDTLTKDPSLLVMGAGTHLD---PEIAALRALTEVAQSRASQLQGGRVNPDRQHLLERITDYFDEDIGVALD---GKETERVLVCDLSRTPVPVVRPG............................................................................................................................................... 305
8 -5.310PF10386.9; R6M9U9_9CLOT/28-167; Protein of unknown function (DUF2441 topsan)  ali follow..  10  56.....................ELVFEHIRKCYFPECPSKCMY-----VLKDKDEVNGWLEIFKRINRKPLVFEGNASLILRQSNSIND-KIIQAKNYWSG...................................................................................................................................................................................................................................................... 140
9 -5.220PF12015.8; A5E7H1_LODEL/45-220; Domain of unknown function (DUF3507 topsan)  ali follow..  12  5LRGEFDVQKTVSQQQLSPGLLREWNRIFEEAAIFTGFDEKLFG--------TVVTIVYRNCTSGQISAQSLTKFGLSTYLDLKLD--------SSRFWPSCENLLPKYKKSHVRRALAILNLKNSSKLLNHHELMGTLPMWDETDAGNLANNMKLIQNAKPSEVGKTLLDF------GLLQNHHILTFIMDV.......................................................................................................................................................... 175
10 -5.060PF01144.23; SCOT1_HUMAN/43-272; Coenzyme A transferase  ali follow..  3...................DPVEAVKDIPDGATVLV------GFGLCGIPENLIDALLKTGVKGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEV-----ELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFAVKAWKADRAGNNLPMCKAAETTVVEVEEIVDIGAFAP------EDIHIPQIY.............................................................................................................. 223

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.