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Query: [J] COG0018 Arginyl-tRNA synthetase, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNVMQENQIKLIEHIKQAVVQAVGLEETEVPEILLEVPKDKKHGDYSTNIAMQLARVAKKAPRQIAESIVPELKKDTKLIKEVEIAGPGFINFYLDNAYLTDLVPVILTEDKKYGESDFGKGEKFQIEFVSANPTGDLHLGHARGAAIGDSLANIMKMAGFDVSREYYINDAGNQINNLVLSAEARYFEALGLESEFPEDGYRGSDIIALGKDLAAKYGDKYVNASEEERRSVFRVDALAFETGKLRADLEEFRVSFDEWFSETSLYEENKVLPALERLRENGYIYEQDGATWLRTTDFEDDKDRVLIKSDGSYTYFLPDIAYHLNKLERGFDVLIDIWGADHHGYIPRMRAAIEALGYSPNQLEVEIIQLVHLFEDGVQVKMSKRTGKSVTMRDLIEEVGLDATRYFFAMRSSDTHMNFDMSLAKSTSNDNPVYYVQYAHARISSILRSGKEQGLEVSKDANMSLLETEAEYDLLKVLGEFADVVAEAAVKRAPHRIVRYLNDLATAFHRFYNSNKVLDMDNLEVTKARLALIKTAQITLRNGLTLLGVSAPEKMLast
1 -62.200PF00750.19; SYR_HAEIN/95-446; tRNA synthetases class I (R)  ali follow..  20  5...........................................................................................................ALSHKNLGIQA-TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLEKMQNEHASEMLQDLEAFYREAKKHYDEDEVFAEKARNKLQSGDEYCRTMWKRL-VDITMQQNQHNYARLNVTLTEKDVMGESLYNPMLPSIVKDLKKQGLAVENDGALVVYLDEFKNKDGVIVQKKDGGFLYTTTDIAAAKYRYETKANRALVFSDTRQSQHMQQAWLITRKAGYPDSFSLEHKNFGMMLGKDGK--PFKTRTGGTVKLADLLDEVGIGAVKYADLSKNRTTDYVFDW...................................................................................................................................... 352
2 -52.500PF05746.15; SYR_PYRFU/507-629; DALR anticodon binding domain  ali follow..  38  1....................................................................................................................................................................................................................................................................................................................................................................................................................................................IQYAHARCSSILRKAEELGISTDLKVANFNQITEKERELIMLLSRFPEIVQQAGTDLKPHLIAWYANEVASTFNKFYMDHPVIK-AEEGVREARLLLVMATRQVLRNSLWLMGIEAPDKM 123
3 -36.400PF03485.16; SYRC_DROME/81-171; Arginyl tRNA synthetase N terminal domain  ali follow..  33  1........EHLESVFRQAIASAFPEFRDTPVIIAPVNSTSAKFGDYQCNNAMGLSKKLKKAPRDIATELKGHCPAS-PIIEKLEIAGAGFVNVFL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 91
4 -27.700PF01921.18; Q5NP46_ZYMMO/15-368; tRNA synthetases class I (K)  ali follow..  12  1................................................................................................KAWPFEEARKLLKR-----YAKAAPEKGYILFETGYGPSGLPHIGTFNEVLRTTMVRRAYEILSDTPTRLIAFSDDMDGLRKIPDNVPNHEMLAK----------HLGKPLSRIPDPFGKYESFA------------------HHNNAMLREFLDRFGFEYD-FYSASEQYNSGRFNETLKDILRNPVEVVDTEAGIIRFEDEGETVEQSILDGKAKLQWKV-DWAMRWKALGVD----YEMAGKDLIDSVTQSSKITRVLGGRPPE---GFNYEMFLDENGE--KISKSKGNGIGLEEWFRYGPEESLAFF-AYREPKKAKSLHLGVIPRAIDENPVHHIH...................................................................................................................... 351
5 -16.300PF01406.19; SYC_BACSU/15-314; tRNA synthetases class I (C) catalytic domain  ali follow..  15  6........................................................................................................................EEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGYDVQYVSNFTDVDDKLIKAANELGEDVPTIS------------------------------------------------ERFIKAYFEDVGALGCRKADLHPRVMENMDAIIE-FVDQLVKKGYAYESEGDVYFKTRAFEDALDFALWKAKGRPGWHIECSAMVKKYLGDQID--IHAGGQD---HENEIAQSEALTGKTFAKYWLHNGYINI-----DNEKMSKSLGNFVLVHDIIKQHDPQLLRFFMLSVHYRHPINYSEELLENTKS.............................................................................................................................. 300
6 -12.700PF09334.11; SYM_CHLTE/8-409; tRNA synthetases class I (M)  ali follow..  14  1............................................................................................................................TLVTTALPYANGPVHLGHLAGVYLADIYVRYKRLCGHDVIHIGGSDEHGVPITITADKEGISPQEV------------------------------------------------VDRYHTMNAEAFAKCGISFDYYGRTSGPVHHQTAREFFLEIEKKGIFVKETLHWYFPLGRYQKQADRAITRDKGKVLYVWFDAVLGYISFTKEWARIINFIGKDNVVFHTLMFAILMAWNEGRSEGRYELADNVPMNFEGR--KFSKSRNYAVYLGEFLERFPADTLRYSIAMNYPNKDTDFSWSDFQNRTNGELADTLGNFIKRS................................................................................................................ 401
7 -9.270PF00749.21; SYQ_ECOLI/27-338; tRNA synthetases class I (E and Q), catalytic domain  ali follow..  14  1...........................................................................................................................TVHTRF-PPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLR---FDDTNPV------KEDIEYVESIKNDVEWLGFHWGNVRYSSDYFDQLHAYAIELINKG-----LAYVDELTPEQIREYRGTLTQPG--------KNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAK---AEHHQTGNKWCIYPMY---DFTHCISDALEGITHSL---TLEFQDNRRLYDWVLDNITIPVHPRQYEFSRL-----NLEYTVMSKRKLNLLVTDKHVE--GWDDPRMPTISRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNE.......................................................................................................... 312
8 -7.110PF00133.22; SYV_YEAST/156-780; tRNA synthetases class I (I, L, M and V)  ali follow..  16  13.............................................................................................................EPEFTADGKVKPEGVFCIPAPPPNVTGALHIGHALTIAIQDSLIRYNRMKGKTVLFLPGFDHAGIATQSVV------------------------------EKQIWAKDRKTRHDYGREAFVGKVWEWKEEY--SRIKNQIQKLGASYD-WSREAFTLSPESVEEAFVRLHDEGVIYRASRLVWSVKLNTAISNLEVENKDVKSRTLLSVPGYDEKVEFGVLTSFAYPVIGSDEKLIIATTRP--TIFGDTAVAVHPDDDRYKHLHGKFIQHPFLPRKIPIITDKEAVDEFGTGAVKITPAHDQNDYNTILTDDGLLNEECGPEWQGMKRFDARKKVIEQLKEKNLYVGQEDNEMTIPTCSRSGDIIEPLLSQSEMAKDAIKVVRDGQITITPKSSEAEYFHWLGNIQ....................................... 408
9 -5.390PF16554.5; Q8RBT2_CALS4/21-98; Dimerisation domain of d-ornithine 4,5-aminomutase  ali follow..  10  3....................................KPYGDTMNDGKVQLSFTLPVPDGAKAVEAAKQLAKKMGLENPMVVYHAPLDKNFTFFII............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 61
10 -5.330PF14133.6; A8MEI8_ALKOO/37-288; Domain of unknown function (DUF4300 topsan)  ali follow..  10  3.......................................................................................................................................................................................................................................................................SNLADASSQDEVRKAMESAGITAESMDSFFQSVNNFNNTIEKKDLVVDGFSTIDRLEPEYDLLAIQEMWDT--MFIGYNCRITSFDLMKNSIFIGKVNTKNSSELFMDEDALKNSPKKLLSE------------VEQEEFKTLFSFVPTEMTKDISIHLNKVKEDWKAKDIRFSNKAKISLISVFFHSDLDNYLFIGHAGVLIPAEDGKLLFLEKLS--FQEPYQVIKFNNRVELNDYLMNKYDVSWNQPTAKPFIMENDELL.............................. 252
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.