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Query: [G] COG0120 Ribose 5-phosphate isomerase, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTERNTSTDSPEKRAAGIAAAGLVSSGMLVGLGTGSTVAYTIKELGRRVREEGLDILGVVTSYQSEMLAIEAGIRLTTLAQHPELDLAIDGADQIDSELRAIKGGGAAHTREKIVSVSARRFVVVADESKTSKQLDKLVPVEVLPFAKEPVVKKIRELGGKPQLRSAVKKDGPVITDNGNFVLDVEFGVIKDPEALALQLSSIPGVVEHGIFCNVSELYIGNKDGAIKIITRQKLast
1 -73.600PF06026.14; W1NXJ9_AMBTC/82-258; Ribose 5-phosphate isomerase A (phosphoriboisomerase A)  ali follow..  35  1........................................................IGIPTSKQTLDQAVALGIPLSDLDDHPTVDVAIDGADEVDTELNLIKGRGGSLLREKMVEASAKKFIVIVDESKLVRGLGHALPVEVVPFCAKNTARKLERLFDGCKAVCRQRNGEPFVTDNANYIVNLFFEKIGNLEAASERILGVEGVIEHGMFLGMATTVVVAGKSG........ 177
2 -13.700PF00455.22; A9CFA5_AGRFC/78-235; DeoR C terminal sensor domain  ali follow..  15  4..........DKKRAIARKAVDLCNDGDAIILNGGTTTFQMVHYMAAR------RLQVMTNSFAIAEHLVKLSPFENDAIRNFYARRIFLGAQGVGALGIMESDALVIQSEQKLM-RQAEELIVMVDSSKF....................................................................................................... 137
3 -8.450PF05219.12; METL9_HUMAN/56-317; DREV methyltransferase  ali follow..  66LGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAGD-------EVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYD-LTLLKDIRSVLEPTRGRVILA--LVLPFHPYVENVGGKWEKPSEILEIKGQNWEEQVNSLPEVFRKAGFVIE....................................................................... 233
4 -7.960PF12692.7; Q2K041_RHIEC/1-158; S-adenosyl-L-methionine methyltransferase  ali follow..  14  9...RRLTAQRDILNAITALVEDIEGPVLEFGLGNGRTYDHLREKFPGRRIIAFDWEVRSYSASTPEPQDMVTGNIRDSGQAFLGIGAALAHAD-IGTGHDEIDAVTLTWLPQLMAGVLAPNGIAVSGL.......................................................................................................... 132
5 -7.880PF04198.13; DEOR_BACSU/56-311; Putative sugar-binding domain  ali follow..  29.TPDYAGITHDLSRYGAEYMHETVKDGDIVGVSWGTTMYQIAQNMQPKQVKGVEVVQVVFDNADVKRMVEKDRHIERIIEMGKQANIALFTVGTVRDEALLFRLGYFNEEEKALLKKQAVGDIC----SRFFDAKGNICSSAINDRTIGVELQDLRLKERSILVAGGSRKVSSIHGALTGKYANVLIIDQHTARAL...................................... 254
6 -7.200PF07101.11; B3GVD0_TRYBB/1-124; Protein of unknown function (DUF1363 topsan)  ali follow..  15  4........................HGNIDIGCGAGNTMDATFRSCTPHESFYYLSINHDLKAREAQNNNTNSDTICFSTHLHKRSNRRLDRRCEYIFGICSIKGNSAARRKKFLNTPLCQRYL............................................................................................................... 102
7 -7.030PF16957.5; E0SJB1_DICD3/11-551; Malonate decarboxylase, alpha subunit, transporter  ali follow..  12  217.DPRLIKQEHILMAMMAIKGIYAEHQVQSLNHGIGFNTAAIELLLPTYGERLGLKIPAIESGWVDSVHCFGGELGMEAYIAARAVDMFIGSTLQVDGLGNSLSGFGGAP-EPDSMQRGRKLVVQMVETFQAGVKPTFVEKLDAVDVAKAAGMP-------LAPVMIYGDDVTHVLTEEGIAYLYR................................................. 460
8 -6.980PF01008.17; EI2BA_YEAST/15-292; Initiation factor 2 subunit family  ali follow..  13  88.....VSRAKKSRNKIAEIGVDFIADDDII--GYSRAVFSLLNHAANKFIRFRCVVTESRPSKQGNQLYTLLGIPVTLIVDIDKVDKVFVGAEGVAESGGIINLVGTYSVG--LAHNARKPFYVVTESHKFVRMF................................................................................................... 226
9 -6.660PF02550.15; ACH1_YEAST/12-230; Acetyl-CoA hydrolase/transferase N-terminal domain  ali follow..  14  6..........LKKVKEAHELIPLFKNGQYLGFTGVGTPKAVPEALIDHVEKNNLRIEFFDKHLSMFPQDLTYGFYTRERKDNKILDYTIIEATAIKEDGSIVPGPSVGGSPE--FITVSDKVIIEVNTA......................................................................................................... 171
10 -6.260PF07652.14; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  16  1.......................FKKKQLIVLGAGKTRKVLPEFIRQAVERRLWTLALAPTRVVAAEMAEALN--LLSGGRVPNYNMFIDEAHFTDPSSIAARG--------STKVDMGEASAVFMTAT......................................................................................................... 135

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.