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Query: [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGGLast
1 -80.900PF00497.20; A6X2Q5_OCHA4/44-271; Bacterial extracellular solute-binding proteins, family 3  ali follow..  27  1...........................LSVGSDLTYPPFVYMK-DGKPAGFDVELMEGVAKQLGLAAEFKDTRFTSLITGARANHFDVIASALYVTPERQKILNFI-PYIKAGSSLLVLKDAKFPANEKELCGKIIGSMQGASWLPKLKALSEDGAIETREFDTDAQVTQALRSGSVDVEFMDNVVAAELLKKFPDDYAV------TSSALIYPIMVGVATTPQNKELFNAMNDAFAQMRKDGSYDALVKTYG....... 226
2 -26.100PF10613.9; H3CIB5_TETNG/416-530; Ligated ion channel L-glutamate- and glycine-binding site  ali follow..  15  11....................................NPYVMRKDNYQYEGFCVDMLREVADILKFSFKIKLVDWTGMVGELINRKADLAVAAFTITSEREKVIDFSKPFMTLGISILYRV............................................................................................................................................ 113
3 -25.000PF02916.15; Q8DZD3_STRA5/72-187; DNA polymerase processivity factor  ali follow..  16  6.........................................................................FTTIILVLASIFVATTLYGFKSTIDLTNNLNKTASYSEIEMSVVVPKDSK-ITNIEAVSKLAAPVKNDTSNITDLIEHIKSESITPQKTDSYQDAYNRIKSGDSQAMV............................................................................... 115
4 -20.000PF14503.6; F4GIV3_SPHCD/83-314; YhfZ C-terminal domain  ali follow..  10  1LSLLLDICDMNSLVGVMPLPYSKRYEGLATGISTSM----------NKGKMRTSLVFSRGAD-------------NRLEGILEQRYDFAVVSRLAAEHYVEKHNFGPHTYVDQHALVTCRNGV-NLKAQDFSNCRIGVDEASTDQRILSHRFRDTQVTYVPIV-YNQVIPALKGNDIDATIWNADALDARKNG--------IFSFPLEQISQDDTEAAIIHLAGKPFISRILAELLNEYQKKVMAGACMPQY........ 232
5 -15.500PF12974.7; D0KYK9_HALNC/62-317; ABC transporter, phosphonate, periplasmic substrate-binding protein  ali follow..  14  18.....................................................STAAYLSEKNPGYSHIEPMFLSELAAAVRENRLDFVLTQPLQFVQLAQNDDVWGTLNRFGSAIIVRADRSDLQHVSDLKNKIVAGKDALGAWLLGLDTLVRAGIDPKTQLPMFQIVEAVWQHRADAGVIRAGFLEQLESQGAKKGEFRVLDPSLVSTELVPEWPFSATSSVDRVFAEKVARDLMGMTPDNP................ 237
6 -14.600PF09084.11; M7UJG4_BOTF1/16-238; NMT1/THI5 like  ali follow..  19  1.................................PYHAPVYLAQKLGADEGIKVALLEP-------------NDPSDVTEIIGSGKVDMGFKALAAKARDFPVTSIGSLLDEPFTGVVYLKDSGITTDFRSLKGKKIGY-VGEFGKIQIDELTKYYGMDYEAVRCGMNVSKAIIEGSIHAGIG.............................................................................. 144
7 -13.600PF12916.7; A4YDV4_METS5/1-196; Protein of unknown function (DUF3834 topsan)  ali follow..  14  14..........................................................................PMIASTMKNKDIIIDFGKDG----SADVILDSTVSLVRRGLRTDYVTIKGLMVVSPDVGKRIGVRKGSAADVLTRALLDKKGIRGEYADEMPRLVEMLNKKEVDSIVIASPFAK---------------GKTFEELLGIPGSCGASVNANHEEFISAYSEGIELMKQD-GVAEYVAKKLPIQA... 181
8 -12.400PF00060.26; B7ZPS4_XENLA/162-426; Ligand-gated ion channel  ali follow..  14  16..........................SLCLFLVGRLSPCEWTELSTEQNNFTFSLWFGAGAFTLQGAEPHPKSVSARIIAVIWWIFSIVLVA---------------AYIASFAAFLNSVQTTNIQTFEDLVNQEFGTINSSSTFQFFKNSKNPTYRMIYEYKSFAEGVRRVRESNY-AFLGESVMQDIMVAKH---------ELARAPQIIAGRGYGIAASIDSQ-LIKQLSIAILEQTESGNIEYLRKKWW....... 234
9 -10.600PF05736.11; PORF_PSEFL/1-186; OprF membrane domain  ali follow..  3LKNTLGFAIGSIIAATSFGALAQGQGAVEGELFYKKQYNDSVKHIEDGFNPGARIGYFLTDDLSLNLSYDKTNHTRSNDGTGSQKIGGDTSSLTAQ--GQAGVDSLRPYVEGGFGHQSRGNVKADGHSGRDQSTLAIAGAG....................................................................................................................... 144
10 -9.840PF02030.15; Y045_MYCGE/1-482; Hypothetical lipoprotein (MG045 family)  ali follow..  10  1MKKQLKYCFFSLFVSLSSILSSCGSTTFVLANFESY--------------ISPLLLERVQEKHPLTFLTYPSN-EKLINGFANNTYSVAVAS--IERDLLSPIDWSQPYFLQNLVFVYRGEKAIVKHKDRFNDNRLVFNNNSADVNPKEDGIGYFTNVYESFQDSNIVINELASGRRQGGIVDAVYAALGGDLRDELSEEQIPDGNNF---------LLVINKQQSNFQKEAHEIIFDLALDGADQTKEQ.......... 342
11 -9.150PF13379.6; B0UDN0_METS4/41-302; NMT1-like family  ali follow..  14  1....................TGPEVKGAKLGF-TDAGPLFVAKEKGAKHGMEVEVLKQ-------------ASWGTTRDNLVLGSEGNISAGRVTQNNVPVPMHILARLNLNGQCISVAKEFRVATDKKKAAGKSVKAFPGGTHDLWIRYWLAAGGIDPDR--PPPQMVANMKVGTMDCFCVGEPWNAQ-LVQQGLGYTALTTGELWKDHPEKAFAMRADWVQKYPNATRALLMAVIEAQQ................... 246

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.