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Query: [K] COG2101 TATA-box binding protein (TBP), component of TFIID and TFIIIB, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEREKITIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGAKNIEDVKRTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVGLILast
1 -40.200PF00352.21; Q74N53_NANEQ/26-117; Transcription factor TFIID (or TATA-binding protein, TBP)  ali follow..  22  1................................................................................................QLKLTNMVFHVRLTSSKPLDLSKVAEEMVNAIYEKDRFPGVRLKLNVPTISILLFRKGPIIVSGVTKKEHLIAAIEYACDIIRKY... 92
2 -11.900PF11858.8; RNH3_OCEIH/3-77; Domain of unknown function (DUF3378 topsan)  ali follow..  21  10.................................................................................................................QIQKMKKYYL----SQLTSTPQGAIFRAKTNNAVITAYQSGKVLFQGSAPESEAS................ 60
3 -7.080PF02114.16; PHLP_RAT/35-299; Phosducin  ali follow..  9  125............................................................KQVLIPSGEGFLDMIDKEQKSTLIMVHIYEDGVPGTEAMNGCMICLAAEYPTVKFCRVRSSVIGASSRFTRNALP-----------ALLIYKAGELIFVRVTDQLGEDFFAVDLEAFLQEFGLL 240
4 -6.670PF14729.6; Q2G174_STAA8/25-118; Domain of unknown function with cystatin-like fold (DUF4467 topsan)  ali follow..  9  4.................................................................................................................DIDKVYKEQNQMNKIAS-KVQNTIKTDIKQEDSNTHVYKDGKVIVIGIQLYKDREKMYYFAYEI....... 66
5 -5.690PF07511.11; Q13VW7_PARXL/35-145; Protein of unknown function (DUF1525 topsan)  ali follow..  9  1....................................................ADVLVVTDSRHPLKTMGGERLIEDEAHRIEAELSVELPADSEQAAAVVKRRLNSGGADLQRRIASAYQGV-TDAWSLGITSIPAVVV-------------DQRYVVYGEPDVARAVARVQQHRR........ 111
6 -5.390PF13270.6; Q9VQ84_DROME/121-209; Domain of unknown function (DUF4061 topsan)  ali follow..  21  17......................................................................................................................................................FHSGKLRAFGSGCTMDQMTKIREQQESLAKLHF. 49
7 -5.310PF18185.1; A0A0U4V3A3_9GAMM/255-461; Sir2- and TIR-associating SLOG family  ali follow..  13  1......................DLLRFGIKTIFVT-SYLEITNILRQLEWAYRRKTIFISGSAHEYARWNSSTAENFIYSLAKDIAKLDFKIVSGFGLGVGSSVITGVLEHQRLDSEQLILRPFPQSAVGARPIAEVWHDYRTSHAGIAIFLFGVVIADGLLKEFEIAKFHGLLLLPIGATG.. 174
8 -5.230PF00707.22; Q7N3P7_PHOLL/53-139; Translation initiation factor IF-3, C-terminal domain  ali follow..  11  1................................................................................................................TKVKEVKFRPGTEEGDYQVKIGNLKRFLENSDKAKVTLRFRGREM----AHQQIGIEMLDKVRNDLDGLAVV 68
9 -5.230PF00983.18; CAPSD_GFKVM/49-225; Tymovirus coat protein  ali follow..  12  39LSIASRPEVVTVARPYRHARLTSLEAFVQPTASS-------------ATYPQTVDLCWTIDSVTPARSEILS-----------------------QRIAWGSVHFSAPILLPAELSSL-----------NPTIKDSVTY-TDCPRLTCGFYRNDACVALGSSAPICGSILIRGVIECSAPIN.. 176
10 -5.200PF09354.10; H3AJ30_LATCH/355-418; HNF3 C-terminal domain  ali follow..  23  4......FSINNLMSSEQQHHKMDLKAYEQVMHYSGY.................................................................................................................................................... 33
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;