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Query: [S] COG2833 Uncharacterized protein conserved in bacteria, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDKPTYEQTLRGNAIRAISACDLDEKVRLARETASRWFARALSVRSPLDPPLPERPGRPEKPELVPPRMLKKRSLNTEHGRIALMHALAHIELNAIDLALDIVARFAVKPIPRSFFDGWMKVADDEARHFTLLRNRLKSLGADYGDMPAHDGLWQSAHQTRNDLEARLAVVPLILEARGLDVTPSLLEKMIETGDHETAAILNIIYNDEKTHVAVGAKWFRFFCARNRIDPAARFRELVRANFRGELKPPFNELARAEAGLTPSFYRSLSPVSILast
1 -82.000PF04305.14; C1MSR4_MICPC/21-274; Protein of unknown function (DUF455 topsan)  ali follow..  41  1...................NTPSAHDKALMTEEIHSMWRTGVMTVTHDLDAPALERPARDARVKLVEPSCAPRLKGGSPESRVAILHSLAHIESWAIDLSWDAIARFGREKMPRKFFEDFLAVAADEARHFSLLAARLVELGSSYGALTAHDGLWESATETRDSLEARLVIEHCVHEARGLDVLPGTIAKFRRFGDPSADLLEHVIYPEEITHCAAGVRWFTYLQNRMGGALVR-FHVIVRKHFKGILKPPFNDEARSRAGFQREWYE....... 254
2 -40.200PF11266.8; Q8DJB4_THEEB/11-228; Long-chain fatty aldehyde decarbonylase  ali follow..  14  4..........................................................................SDRYKDAYSRINAIVIEGEQEAHDNYIDLAKLLP------QHQEELTRLAKMEARHKKGFEACGRNLSVTPDMEFAKAFFEKQRALAEGKTATCLLIQALIIESFAIAAYNIYIP----MADPFARKITESVVKDEYSHLNFGEIWLKEHFESVKGELEEANRANLPLVWKDALVEDFMIQYSENIGFTTREIMKMSVYGL 218
3 -38.500PF11583.8; G0G4P5_AMYMS/7-282; P-aminobenzoate N-oxygenase AurF  ali follow..  12  1......................EPDRE-KTADRLLKSSANKFYDPDVDIDWTAPLVEGK-YGTELWDRLTPEQRIELGKHEVASVATTGLWFEILLMQMLLKEVYE---QDPTSAHAQFALTEIADECRHSTMFARMASRIGCPAYGPVPWLRRLAKLMPTISYGPARYGAVLVAEEVLDRLQREQMTD---EGVQPLVRMVNRIHVLEEARHVTFAREEVTRGMAKLSKAEIGYQQFIIAVISYFVTRAFINPDVYKAVGIRPRDGVEAALNN. 254
4 -28.600PF02332.18; G7ZAS0_AZOL4/60-290; Methane/Phenol/Toluene Hydroxylase  ali follow..  10  6.....GDGTPTYSKDWTALKCTDWHGFRAPDQEWERTHYQRQSTIVGMIQNVVENARRAGAPQRF---------DKAWVTVLQNHVGAFKHAEYGLGTALMRAQRYGYTQ----MVNNAILTNASYKLRFAQDLTLYLAEVGSDIGGFDLDAG---EHIRAATDFLEQYFAVNLVFEPLVGELFGFVMQVAAAQNDFSTPSVISAAEADYERNLANAVELFALLLRD................................................ 230
5 -27.000PF02915.17; O26850_METTH/9-145; Rubrerythrin  ali follow..  17  3.....................................................................................LTKAFIGESQARNRYTFYAKIAKKEGFE-QISEIFLTTADNEREHAKWLFRLINDLKKEVGEDLSSIVVDAEAPLTLGTTDENLIAAIEGEHYENSEMYPEFADVAEEEGYPEIAKRLRAIAEAEKHHEERYRKLL...................................................... 137
6 -20.300PF03405.14; E1ZCJ2_CHLVA/69-399; Fatty acid desaturase  ali follow..  11  1.........................EQLDVVASMDKYAEEHVLPILKPVEKC----PHPESPDFLDHVHQLQQRTKEVPDDYFVCLVGDMITEEALPTYMAMLNTLDGVRDEPTPWGRWTRQWVAEENRHGDLMNKYCWLSGRV--EVTIQNLIGSGMDPKTENNPYLGFIYTSFQERATKVSHGNTARMAAEYGDEVLGKVCGAIASDESRHEIAYTRIVDEFFRQDPNNAMLCFADMMRKQI............................... 229
7 -20.200PF05138.12; Q5P3I7_AROAE/1-255; Phenylacetic acid catabolic protein  ali follow..  12  3..........................................................................QQMTSPEHIEYVLRLGDNALILGQRLSEWCGHAPV-----EEDMALANMSLDLIGQARMLLTHAGRLEGRGRDEDQLAFLRTEPNYRNLTLCELTMVRNFLYSSFQK----LLWERLMTSSDAELAAIAAKSIKEARYHAQHAGDWVIRLGDGTAESYARAQGALVDDTVAAAGVGPAWSELETA--WEALAMPVLAEATL 215
8 -19.800PF00268.21; RIR2_SHV21/5-277; Ribonucleotide reductase, small chain  ali follow..  12  18...............................ETWKNRWFPSQVPLQGDV-------------------CCVDMLNERDLEFYKFLFTFLGMAEKLVNINIEDLLSQFDSH----DISHYYAEQMAMENIHGKVYANILNMLFKN--SALQEKLRWLNGRVTEASDKAEKILLFLLVEGIFFISSFFSIGLFRVRG-NGICLANDYIARDEMLHTSAAALLYNTMTKSSERPSEDWIYKLFREAVEVEFK--IAAKGYGVSLVNVHEIRQFLQATA 251
9 -17.300PF09968.9; A6LNR3_THEM4/28-188; Uncharacterized protein domain (DUF2202 topsan)  ali follow..  10  1.................................................................................ETESIMQMRKEEKLARDVYLVFYDLWGIR---------FSNIAGAEQQHMDAVLTLIKKYDSNDPEDENLQALYNQLVEQGSKSLEDALIVGATIEDLDIYDLEEFLK---ITDNQDIEFVYKNLIKGSENHMRA----FVSQLSRFSKTYTPKY-------------------------IFLEKFNEI..... 158
10 -16.600PF11251.8; C7PJT1_CHIPD/18-247; Protein of unknown function (DUF3050 topsan)  ali follow..  12  8.........................................................................PEMQRMDDIRAFMQYHVFAVWDFMSLLKSLQRNLTCTDIPWATRFLINEIVTGELSHFELYLQAMEQVGADTSGIKECLQQLERDLIANEPVHVQAAVFTFGREDLIPDMFLALVNDLDKQFPGQISLFKYYIEVDGDHHSHLGMEMVQELCGNDPQKWEEAAQA-----------------SRAALEQRNALWNGI..... 230
11 -16.400PF05067.12; Q9KAU6_BACHD/1-281; Manganese containing catalase  ali follow..  12  16............................................................................RPDPVYAKKLQEILGGQFGEISVALQYLFQGWNTRGDGKYRDLLMDTGTEELAHVEMLATMIARLLDGAPVGDQEAA-WTADYIIASGNLLADFRMNLTAESQGRLQAVRLYEM---TTDPGVRDMLSFLIARDRMHQNQWYAAICELEEKENIVVPSTFPTHLEKQEVAHTFFNLSEGHESSTG.............. 230
12 -16.200PF06175.11; Q8CX43_SHEON/3-250; tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)  ali follow..  11  1.........QLLAPVHAFLRCETPQTWIDVARALLIDHCNCELKAAQTAMFLLRRYALNAESGQSLLAWAKPYEEFVYHKDRDIEQFLARDVKKNELVAVLQPNQHFSFA---QDLIPPLIRLIKEEFHHFEQVLELMHARQIPYRNIRYAKGMMSHVTTHEKNILRDKLIVGAYIEARSCERFAKLAPYL----DAELSKFYVSLLRSEARHFEDYLKLAQLVSSEDISERVAYFGEREAELI............................... 237
13 -16.000PF14518.6; A0QTA7_MYCS2/140-317; Iron-containing redox enzyme  ali follow..  10  1..................................................................................REYFVHRSLYHLKEGDPHAWLIPRI-----SGQAKASFVAIEYDEYLHQQLFADLMEAADLDTTYLGYIGHVLMSMFGLHRKLRGAAAGHFAATEITSSPGSQRLTAALKRLGPEPCVRFYAEHVEADAVH---EQVVRLNVIGDLVEREPELDADVVF.................................. 168
14 -14.000PF13668.6; Q11V37_CYTH3/38-167; Ferritin-like domain  ali follow..  13  3..................................................................................TDTLNYALTLEYLEEAFYVQGLAKSG--LIDSADMTIFNQIKKHESAHVVFLKNVLGSAANPSPAFDFGTAFDS---------YANFLATAQALEDTGVRAYKGQAGNL--ITNKVALTAALQIHSVEARHASE........................................................... 123
15 -13.000PF03070.16; Q9HJM8_THEAC/69-287; TENA/THI-4/PQQC family  ali follow..  10  23...............................................................................KPTVPVLLGYVIEHRFFLKNWIRTLSMVIHSTTSDDAFEYEVENVATEYSHLELLLRMGEALGMSRKRIMEYSPLPETSISNRYSWIDTMGAM-HVLELVADRTLVDDGSPIHYFNPEAVKNFLMEGYEADVGHAGEALKIVQAATMDDLTTRSIMLRSM.................................... 205
16 -12.800PF03232.13; H0VHI5_CAVPO/48-217; Ubiquinone biosynthesis protein COQ7  ali follow..  12  1................................................................................AVDRIIRVDHAGEYGADRILAGQMAVLGRT----SVGPVIQKMWDQEKAHLKKFSELMVAFRVRPTALMPLWNVMGFALGAGTALLGKEGAMACTVEETIAHHYNNQIRMLMEEKYEELLQLIKTIRDEELEHHDTGLY........................................................ 140
17 -12.500PF12981.7; B2IZC5_NOSP7/4-227; Domain of Unknown Function with PDB structure (DUF3865 topsan)  ali follow..  10  33.............................................................................SFAQIAYVMQQYSIFPKELVGFTELARRKALGAGWN-GVAQELQENIDEEMSHYTLLADGLEELGVAVKNSVATSKLLRTVLSLFDRQVDYVLGATYAIEATSIPELTLIVKLVEWLPKDLQYFFSKHLDEWEIEHEAGLRTSVAAYIQPEEFGE-------------------FAAGFRAMIDAMQVWWQELAQ... 223
18 -10.800PF14530.6; C6WDL2_ACTMD/9-146; Domain of unknown function (DUF4439 topsan)  ali follow..  11  1....................................................................................AVQVGLGAEHAAVWTYGLVSAFL-----PKAQEAVVAEGANAHRARRDTTERWLRDAGQQPKPAAA-----AYLPPEGVQDAASSIAALVAVEADCCAA---WRGVLERTDDNALRTTALTALTESAVRGT............................................................ 118
19 -10.400PF12902.7; A4FHP6_SACEN/30-243; Ferritin-like  ali follow..  24  1.....................................................................................LQAAMQIELTTIPLYMTAMYSIHPGTNE-EAQLVIRSVVLEEMLHLTLAANLVNALGGN................................................................................................................................... 58
20 -10.400PF10118.9; W5TCA2_9NOCA/20-279; Predicted metal-dependent hydrolase  ali follow..  38............................................................................................ERMFIETFSEALPLIKDEKLREQVIGFMGQEAMHAETHNDSVQQVFRAHGVDVDSYARQMEYVFRKALGPRAGQDARLGFIATLEHFFAFLGDWIINLERFDAAPNMLDLYRWHGAEEVEHRFVAHDVATYF................................................... 180

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.