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Query: [S] COG3111 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNPLast
1 -41.300PF04076.13; YGIW_ECOLI/25-127; Bacterial OB fold (BOF) protein  ali follow..  100  1........................GFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIR.... 102
2 -20.100PF16100.5; I3IYQ1_ORENI/15-142; RecQ-mediated genome instability protein 2  ali follow..  15  38..........................................................SLVWMQGTVLEQQDRDTVLLMDETGTFVVQGNNIPKGKPCLSQGKYVMVMGIIQAVSPEPVIRAVKMADLSE 111
3 -16.600PF10451.9; Q6FM89_CANGA/3-245; Telomere regulation protein Stn1  ali follow..  14  55..........................................................RRLKFVGTVIGVKYMWLIHLDDSSDSSILKLNSFGININAGFIGSRVEVCGVYNTEFNELEVGFIGV..... 135
4 -12.500PF12869.7; A6TEE6_KLEP7/1-152; tRNA_anti-like  ali follow..  14  2LLRFRVLPLVFVISLLSGCGLASKAFYSAGDKLFQPGDDAVASMQTYSVAQASSDYLGKWVKVRGVIVDIRRKSGIA-NKTDKRLTFNFGSHNSADEALSNGSVATIVGQVHQVQDSTIPTLQNPKV... 152
5 -11.600PF02760.15; I3N161_ICTTR/202-369; HIN-200/IF120x domain  ali follow..  11  96.........................................RANETPKIDHLHKQAPGTLVYGLFMLHTKKVNKKYEIQDNTGKIEVLG--GKWHNIQCDEGNKLRLF...................... 164
6 -11.500PF12483.8; Q8DL39_THEEB/91-248; E3 Ubiquitin ligase  ali follow..  12  21.................................................................ILSSNTQTIPFRLRDGDMEIYVDPRGAEYEEWILPVNQQVFVVGTASDERGKLRI.......... 116
7 -10.700PF18018.1; M2X386_GALSU/35-168; DNA polymerase delta subunit OB-fold domain  ali follow..  13  27...........................................DGILFRDRLLHLQQGDNCVIIGVIYKEMDSDVVILEDETGRIRLNFDRCCLGVNILLTGTVVAVKGQETSS----DFSVDEL..... 134
8 -10.400PF17191.4; A8F350_PSELT/110-273; RecG wedge domain  ali follow..  15  39..............................................RKIIPISEISFEGKLTTRGKVVNVETKKAAVLADGVSQLLLKWFNQEYKGLQVLKNKTIYATGLVKHSFGGIEMVNPEIEPEDG 132
9 -10.300PF03100.15; E1SMF5_FERBD/4-136; CcmE  ali follow..  11  4.KRLVFASALIGGVAAIASLLIYA--------NSNLDLFFTATEVVQGRQDGLKPEVGQRIRIGGMVVEGS---AFQVADTGPAVTVLYDG----PDLFREGQGIVAQGTLVDST---TLEASEVLA... 124
10 -10.300PF13567.6; B8HTS3_CYAP4/25-213; Domain of unknown function (DUF4131 topsan)  ali follow..  13  35TPRIWLMATGVALLALLYFYLRIPQPGVTDISR---------------IPRLEVLGGNPIVKVEGTIEDRSGKMRFFLNVKSGSLYVTVPAK--EAEDLHPSQTIAIRGRLYQ................. 154
11 -10.200PF17244.2; A0A078HC14_BRANA/408-638; Cell division control protein 24, OB domain 3  ali follow..  18  7..........................................................TGISLYGVVTDILCDPSLKIEDTTGAIWARLFNSYWSLGRLGLGHVVYVSGLSCKTTKENCLEV........ 78
12 -9.250PF11948.8; F9ZZG9_METMM/15-138; Protein of unknown function (DUF3465 topsan)  ali follow..  13  4................................PLAWADTPYSASDTALQQAFRSHRSDLRIDGEGVVIKLLPDDNFILRLRTGQTLLIAHNIDLAPKNLRVGDTVSFYGEYEWSEKGGTVH......... 101
13 -9.090PF15490.6; E1BYI8_CHICK/2-117; Telomere-capping, CST complex subunit  ali follow..  13  3.........................................SAGVYYFPWEINSIPEGEALRTFGRLSCDLARSEAILSTQHGSHHVRIDTTLVEPFEAQLGSLYVVLGEAEHEGESPVIKARILTCVE. 95
14 -9.060PF03843.13; Q9KQL1_VIBCH/34-187; Outer membrane lipoprotein Slp family  ali follow..  5............................ASLPPELGNPDDKSVVTQYSAWLERDPATQSPVRMGGVVANISNQKDRTRQEPQGRFVAYV-PGFLDPITYGEGRLLTLYGTTDYEHTYPVMNAQGYHL... 128
15 -9.060PF11736.8; K0CF90_ALCDB/25-167; Protein of unknown function (DUF3299 topsan)  ali follow..  13  44...............................................NSAPLQQSLDDKDIRLTGFGVDADHVREFLLVPYFGAILVRASGKGVPLDAIM--GALQVTGTLKVTPEETEMKASDVK.... 143

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.