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Query: [S] COG3767 Uncharacterized low-complexity protein, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKNIAAALAGALSLSLAAGAVAANKPASNATGVHKSAHGSCGASKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSKLast
1 -10.200PF02101.15; W5K1T9_ASTMX/5-409; Ocular albinism type 1 protein  ali follow..  5  316.TGLDVDLSLQPRRELAWDSASTSLVTAGGYNTMVASTLLYQSHVQEGKKLAGNGHHQASDAASVLSEGSESSTIEIHISSELRDGEEVDA........... 405
2 -7.600PF01469.18; PPE16_MYCTU/209-248; Pentapeptide repeats (8 copies)  ali follow..  20  1.............................................................GNIGDYNLGNGNTGNANLGSGNTGQANLGSGNTGFFNFGS. 40
3 -7.600PF04931.13; K2SXE2_MACPH/89-879; DNA polymerase phi  ali follow..  5  641.FDQQGSEDGEDASEDDEDEQDSDVEMVEADGSDVEEVEEASDVDEEEEEDEDEEGGEDGSDADDEELEKFNAALAKTLNTSMLTGEGEDSDDDDEADMDDD 741
4 -5.880PF01080.17; W4XU10_STRPU/68-474; Presenilin  ali follow..  5  238.QEPPVEEHTAEENATATGTTVSGQEDQTVSSDQEVNGGFDTVFTERRERDLERSANSSVTSEDRRAAVRALRQNNGPSNRQPPVDEEEEEERGVKLGLGD. 337
5 -5.720PF05934.11; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)  ali follow..  7  441.RAFDLPDTEAQEHPEVVPSHKPSIVNTSLKETSELPRESTLAECSQCAKDGSGQVPSTAESSPIVEKAQLKTDSECRPHSTEAAAAAARGTDPVSSPCG.. 539
6 -5.470PF06213.12; A8IMY9_AZOC5/15-286; Cobalamin biosynthesis protein CobT  ali follow..  9  201LEMGEDRGLENEDDNESDEESSGNQEQGDEDAQRSEDDTQDGATEVEAEMSQEELPDSASESEAGPPAEMPD.............................. 272
7 -5.240PF07432.13; D6YTW7_WADCW/2-121; Histone H1-like protein Hc1  ali follow..  19  70.......................................................AKKAVAKKPAKKAAAKKKPAAKKAVAKKTTAAKKPAAKQAVKKPAKK 116
8 -5.090PF06403.11; Q9YHE0_PETMA/1-138; Lamprin  ali follow..  12  16.........LATATPVVTKHKVSTFSTGFLGHPVGGLGYGGLGYGGLGYGGLGVAGLGYGGLGYPGAALGGAYTHHAAGLVHPYGGLGYHAAPYHHALGG.. 106
9 -4.990PF07327.11; Q966Y0_SCHGR/1-102; Neuroparsin  ali follow..  11  29.......................................RSCEGANCVVDLTRCEYGEVTDF-FGRKVCSEHCNDFIKCGDGRCNCGRCTGCSMHTLQCYSD 95
10 -4.950PF04885.13; M4CFF0_BRARP/12-161; Stigma-specific protein, Stig1  ali follow..  15  59.........NAADHCNKEPEICSSSYYSTGANSTMACCNNKCMDLSADDKNCGACKNKCKFGTCCRGQCVYVAYDKRHCGE--CNHRCNLGELCVYGLC... 147
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.