Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: [G] COG3958 Transketolase, C-terminal subunit, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .
# Score Template Links and tools%idFirst MIKLAPAGLKDDIEMRKVYAGFIAGQIEAGSPIIALEADLMSSMAMDSVARDYPQHVINCGIMEANVIGTAAGLALTGRKPFVHTFTAFASRRCFDQLFMALDYQRNNVKVIASDAGVTACHNGGTHMSFEDMGIVRGLAHSVVLEVTDAVMFADILRQLMDLDGFYWLRTIRKQARSIYAPGSTFTIGKGNVLREGDDITLIANGIMVAEALEAARQLEQEGVSAAVIDMFTLKPIDRMLVKNYAEKTRRIVTCENHSIHNGLGSAVAEVLVENCPVPMRRVGVKERYGQVGTQDFLQKEYGLTAEAIVEAAKSLLLast
1 -58.100PF02779.24; A7IJW1_XANP2/352-522; Transketolase, pyrimidine binding domain  ali follow..  16  1............VATRKSSELVLDFITPVVPEMLGGSADLTGSNNTAITPDDFAGSFVHWGVREHGMAAAMNGITLHKLIPFSGGFLVFS--DYCRPSIRLAALMGERVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPNLLVMRPADTVETAECWQIALQSEGPSALILSRQNLP............................................................................................................................................ 171
2 -54.500PF17831.1; S2LE22_HALAF/474-702; Pyruvate dehydrogenase E1 component middle domain  ali follow..  17  11FASQTGGSKGREISTTMAFVRVLNGLVKDGSRVVPIIPDEARTFGMEFYREDKQGQILEEGITEAGAMSAWIAAATSYLLPFYVYYSMFGFQRVGDLAWAAGDMQARGFLVGGTAGRTTLNGEGLQHQDGHSHIQASTIPNCRSYDPTYAHEVAVIVQDGLKRNCFYYLTVMNENYE............................................................................................................................................ 227
3 -33.800PF02780.20; O16144_ASCSU/223-346; Transketolase, C-terminal domain  ali follow..  34  1............................................................................................................................................................................................GVAKIERPGKDATIVAYSLGVKRAIEAATQLKGQGIEAEVINLRTLRPLDFEAIKKSVMKTHHVVTIDNGWPFGNIGAEVVAQVVESEDGPIERVTGVD.............................. 104
4 -20.700PF03894.15; B8HTE8_CYAP4/424-602; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase  ali follow..  18  1................KPLGAFLRDIMKLNPNFRVFGPDETTSNKLNAVYEASKKFWIA--LSEHTLEGWLEGYLLTGRHGFFSTYEAFMFNQHAKWLQICEHLS-ASLNLLITSTVWRQDHNGFTHQGFLDIVVNKSPAVVRIYLPPDINCLLSVADHCLR........................................................................................................................................................... 178
5 -17.400PF17147.4; Q1IT45_KORVE/244-338; Pyruvate:ferredoxin oxidoreductase core domain II  ali follow..  17  1.....................................................................................................................................................................................................AEILVVGHGIISRVLRSTVDMARAQGMKVGLFRPITLWPFPSKELAKAAKNVACILTVELS--TGQMVEDVKLAVNGRVPV....................................... 79
6 -6.680PF17942.1; A0A022QR03_ERYGU/141-280; Morc6 ribosomal protein S5 domain 2-like  ali follow..  6  2.............................................................................................................................SLRAYASILYLKKFTNFKIILRGKPVEQFSIADDLKH---STTITYSPQRGLALKEVTVQTVIGFIKEAPALGVFNVYHKNRLIRPYWKVTADGNSRGHGVGVLEANFIEPAHDKQDFERSTLFVKLEM............................................................... 130
7 -6.430PF16829.5; Q5G7K8_9STRA/54-154; Avirulence protein ATR13, RxLR effector  ali follow..  24  1........................................................................................................................................................................................SFGLGKAQDPLDKFFSKIIFSGKPIETSYSA------KGIHEKIIEAHDLHPIQYASVMEYLKKTRIVSTLERHDEVGALGAKLRDALDRQ.......................................... 101
8 -5.900PF04095.16; PNCB_NEIMB/171-398; Nicotinate phosphoribosyltransferase (NAPRTase) family  ali follow..  7  3.....................................................................................ISDFGTRRRYKLAWQEHVIRTLLEAAPGIVRGTSNVFLAKKL----GITPIGTMAHEFLQAFQALDVRLRNFQKAALESWVHEYRGDLGVALTDVVGMDAFLRDFDLYFAKLFDGLRHDSGDPYVWGDKAYAHYQKLKIDSRTKMLTFSDGLDIERSWALHQYFKDRFKTG------GIGTNLTNDMGHTPLNIVLKL.................................. 191
9 -5.470PF16870.5; Q169V7_ROSDO/827-981; 2-oxoglutarate dehydrogenase C-terminal  ali follow..  12  15................................................................................................................................................................................RLMWDDAQQGNSKTELVPDKKIRRVVMCSGKVYYDLLEERDERGIDDI--YILRVEQFYPFPAQSAVKELERFKQVVWCQEEPKNQGAWTFIIEWVLGRIKAKHPRPIYVGRATSASPATGLASQHNAQQAALVNEA.... 154
10 -4.990PF00650.20; Q2GUJ8_CHAGB/136-286; CRAL/TRIO domain  ali follow..  15  2.......................................................................................................................................................................................AQYRSGKAYV-KESRPVFIIKVRLHDPKLQSPESMFDLTGFGLKNMDFHVVKFLVQVFEARYPEYLGVVLVHNAPFVFWGIWKMIQPWLDPVIASKINFTSSNRDLGRFIAQENLQKCYG.............. 149
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;