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Query: [R] COG4588 Accessory colonization factor AcfC, contains ABC-type periplasmic domain, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKKYGWRELast
1 -52.700PF01547.25; CYSP_ECOLI/33-278; Bacterial extracellular solute-binding protein  ali follow..  13  2...........................DVSRELFAALNPPFEQQDKLTIKQSHAGSSKQALAILQGLKDVVTYNQVTDVQILHDKGKLIPADNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLI----FPNPKTSGNARYTYLAAKGKTEQFMTQFLKNVEVFDTGRGATTTFAERGLGDVLISFESEVNNIRKQFEVVIPKTNILAEFPVAWVQANGTEKAAKAYLNWLYSPQAQT......... 246
2 -51.200PF13531.6; A9BZ83_DELAS/51-277; Bacterial extracellular solute-binding protein  ali follow..  11  1.....................IRVVTSGGFSAAYDQLIPLYEQATGHKVVTSRGASDSIPSRLARGEQDIVILADGALDNLAAQ---KVEAGSRVDLARSMIGMSVRKGTPKDISTVDALKQTLLD---AKTIAYSASASGTYLANELFPR--LGVAEQMKGKATRILSE--RVGAVVLRGDADIGFQQVSELLPFKELEFVGPLPDQQRVFFSAGVATGAKSPETARHLIRFLAAPAAAPIVRSTGM.. 227
3 -19.800PF12727.7; A0LFW2_SYNFM/425-616; PBP superfamily domain  ali follow..  9  1.....................................ANEIKRRGRMQLSSGNVGSLGGLMAVRRAQTHLLDPATGGYNHSYVERYLQGVPIRLVTLAVRQQGLLVRRGNPAGVRGVRDLARPDVAFINRQG---------GSGTRILFDYRKEELAPEEIRGYDQEEFTHMAIAVTVLSGRADAGMAIFAAARALG--LDFIPVAEER---YDLVIPESFWEDPKMGLLMEIIT............... 192
4 -17.900PF13343.6; B3E2B9_GEOLS/96-336; Bacterial extracellular solute-binding protein  ali follow..  9  57................................................................................................LAMNLLVPVVDHRRLGGRRCWADLLKREYENSLAIR-GHKDGTFCETLLLAIYKDTGVEGLRTMGRNVRYGWHPSQMVKAALGSSADAPAISVMPLFFAVGKEQYSIIWPDDGALISPVTMLVKTEKRAELDDLLAFWAGPQVASIFSGAFF.. 213
5 -15.100PF12849.7; B6YQR6_AZOPC/32-299; PBP superfamily domain  ali follow..  8  2...........STTGDTLSGKVRISGSFALYPMMVKWAETFKIHPDVSFDISGGGAGKGMTDVLNEMVDVGMVSREIYSQEVENGAFCI------LVAKDAVVPIVNVANPEKIKTWGAVLGTSSKTCVHVFTRSDACGAAETWASWFNARQEDLKATSIFGD--------PGIADAIQKGYNNISYAYNRKTKKLNEGLAIIPLDVNGNGKIDYLVTKGKPTSPALISFLKYILSE............. 268
6 -14.500PF02030.15; Y045_MYCGE/1-482; Hypothetical lipoprotein (MG045 family)  ali follow..  9  1MKKQLLFVSLSSILSSCGSTTFVLANFESYIS--PLLLERVQEKHPLTFLT-YPSNEKLINGFANNTYSVAVASTYAVSELIERDLLSPIDWSQVPYFLQNLVFVYRSELEQENVSWTDVIKAIVKHKDRFNDNR-TIFSLANIVNTNNNSADVNPKEDGIGYFTNVYEDSNIVINELASGRRQGGIVYNGDAVPDGNNFHIVQPKISPVALDLLVINKQQSNQKEAHEIIFDLALDGADQTKEQL.... 343
7 -14.200PF00497.20; A6X2Q5_OCHA4/44-271; Bacterial extracellular solute-binding proteins, family 3  ali follow..  9  26...................................ELMEGVAKQLGLAAEFKDTRFTSLITGARANHFDVIASALYVTPERQKIL-------NFIPYIKAGSSLLVLKDAKFRPANEKELCGKIIGSM----QGASWLPKLKALSEDYCAKNNLGAIE------TREFDTDAQVTQALRSGSVDVEFVAAELLKKFPDDYAVTSSALIYPIMVGVATTPQNKENAMNDAFAQMRKDGSYDALVKTYGME. 228
8 -14.200PF14503.6; F4GIV3_SPHCD/83-314; YhfZ C-terminal domain  ali follow..  10  17.....................MPLPYSKRYEGLATGISTSMNKG-KMRTSLVFGADNRLEGILEQRYDFAVVSRLAAEHYVEKQYPIVIAHNFGPHTYVDQHALVTCRNG--VNLKAQDFSNCRI------------GVDEASTDQRILSHRFFR-----DTQVTYVPIVYNQVIPALKGNDIDATIWNADALDARKNGIFSFPLEQISQDDTEAAIIHLAGKPFISRILAELLNPDEVLEYQKK..... 222
9 -11.200PF12974.7; D0KYK9_HALNC/62-317; ABC transporter, phosphonate, periplasmic substrate-binding protein  ali follow..  10  4.....................LAYQGKAQTARRWDSTAAYLSEKNPGYSFHIEPMFSELAAAVRENRLDFVLTQPLQFVQLAQNDDVMVVKTPGGTLNRFGSAIIVRADR-SDLQHVSDLKNKIV------AGASKDALGAWLLGLDTLVRAGIDPKTQIQP--LFTGLPMFQIVEAVWQHRADAGVILESQGAVKKGEFRVLDPSQYSDYPYLVSTVDRVFAEKVARDLMGMTPDNPALISSGISKW.. 247
10 -9.150PF13416.6; R5SZY1_9CLOT/78-401; Bacterial extracellular solute-binding protein  ali follow..  16  1...................................ELAEKYTAETGVPMKVQTAAAGTYEQTLKKEPPTLFQINGPIGYKSWAKYCRDLKDTDIYSIIYNDAIM-AKAASMDDIKNFDTLKAEDMQARKADLGIEGVFASTSKYSDNFKNIFDLYLNNSCTDPKMVGAKTVEDSMAEFALGKV-SQVAGVEGNTVKEEDVKFLPIYTGTENFFSINSQAKEEDQQASLDFLTWLFSSDGKDYVTN..... 307
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.