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Query: [M] COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQNLast
1 -44.700PF13702.6; D4LWD5_9FIRM/56-221; Lysozyme-like  ali follow..  17  1.............................................................................................................................................................................................................................................INSTCEGYRSKVETEAANYDVDLILALMMQESSGQGTDVMQSSEGAYNTKYPQVP-----NGITDVDYSISCGIQELKYALNKAVTDPDDLDHIRLALQGYNFGADVYFNYLEKNGITSWSVESSEAFAKIASGETARSEEDPLAGPWDYG--DQHYPEHVLRYY...................................................................... 166
2 -39.800PF01464.20; MLTC_HAEIN/191-319; Transglycosylase SLT domain  ali follow..  23  6.........................................................................................................................................................................................................................................................AAQRYGIDESLILGIMQTESSFNPYAISYANAIGLMQVVPHTAGQPSTRYLYDPANNIDAGVSYLWILQNQYLDGITNPSKRFAMISAYNSGAGAVLRV............................................................................................................................ 116
3 -31.700PF00497.20; A6X2Q5_OCHA4/44-271; Bacterial extracellular solute-binding proteins, family 3  ali follow..  21  1.LSVGSDLTYYMKDGKPAGFDVELMEGVAKQLGLAAEFKDT-RFTSLITGARANHFDVIASALYVTPERQKILNFIPYIKAGSSLLVLKDAKFRPANEKELCGKIIGSMQGASWLPKLKALSEDYNNLGAIETREFDTDAQVTQALRSGSVDVEFMDNVVAAELLKKFPDDYAVTSSALIYPIMVGVATPQNKELFNAMNDAFAQMRKDGSYDALVKTYG............................................................................................................................................................................................................................................................ 226
4 -14.200PF14503.6; F4GIV3_SPHCD/83-314; YhfZ C-terminal domain  ali follow..  10  26.................EGLATGISTSMNKG-KMRTSLVFSRGADNRLEGILEQRYDFAVVSRLAAEHYVEKHNFGPHTYVDQHALVTCRNGV-NLKAQDFSNCRIGVDEASTDQRILSHRFFRDTQVTYV----PIVYNQVIPALKGNDIDATIWNADALDARKNGIFSFPLE-QISQDDTEAAIIHLAGKPFISRILAELLNPDEVLEYQKKVMA............................................................................................................................................................................................................................................................... 225
5 -13.700PF10613.9; H3CIB5_TETNG/416-530; Ligated ion channel L-glutamate- and glycine-binding site  ali follow..  20  14.VMRKDNYQDFQGNDQYEGFCVDMLREVADILKFSFKIKLVDD-TGMVGELINRKADLAVAAFTITSEREKVIDFSKPFMTLGISILYRV.............................................................................................................................................................................................................................................................................................................................................................................................. 113
6 -13.500PF06871.11; Q2K2P4_RHIEC/1-203; TraH_2  ali follow..  10  9.........................................................................................................................................................................................................................................................QCADPSLKPAIVEQFVTAAGANDPFAVTVKSGVGLTQFAGVGVKDAADSDLVDPCENLRKGTAMFAKVLRIVAKW-VFPQIFDDAVYAWKSG................................................................................................................................... 139
7 -11.400PF02916.15; Q8DZD3_STRA5/72-187; DNA polymerase processivity factor  ali follow..  9  6...........................................FTTIILVLASIFVATTLYGFKSTIDLTNNLNKTASYSEIEMSVVVPKDSK-ITNIEAVSKLAAPVKNDTSNITDIEHIKSEKG--ISITPQKTDSYQDAYNRIKSGDSQAMVL............................................................................................................................................................................................................................................................................................................................ 116
8 -10.400PF12974.7; D0KYK9_HALNC/62-317; ABC transporter, phosphonate, periplasmic substrate-binding protein  ali follow..  9  18......................STAAYLSEKNPGYSFHIEPMFLSELAAAVRENRLDFVLTQPLQFVQLAQNDDVGGTLNRFGSAIIVRADRSDLQHVSDLKNKIVAGASKDALGAWLLGLDT-DPKTQIQPLFTGLPMFQIVEAVWQHRADAGVIRAGFLELDPSQYSDYPYLVSTELVPEWPFSATSSVDRVFAEKVARDLMGMTPDNP..................................................................................................................................................................................................................................................................... 237
9 -9.560PF09084.11; M7UJG4_BOTF1/16-238; NMT1/THI5 like  ali follow..  10  4.................APVYLAQKLGYFADEGIKVALLEPNDPSDVTEIIGSGKVDMGFKALAAKARDFPVTSIGSLLDEPFTGVVYLKDSGITTDFRSLKGKKIGYVGEFGKIQIDELTKYYGMEPTDYEAVR---GMNVSKAIIEGSIHAGIG............................................................................................................................................................................................................................................................................................................................ 144
10 -9.110PF07182.11; A9CGH5_AGRFC/22-320; Protein of unknown function (DUF1402 topsan)  ali follow..  14  153....................................................................................................................................................................................................................................................................VDGTSYEAISFQRAFFQPFYAFGLGQISPLTALQVTYRDVMDPDRSILYIAAIIRDSIDAYREKFDISGNPGITATLYNVGQPRRRAERLRTAVDAGAKKL-----------PVENYY---------GWLINDRLDILKNIL...................................................................... 299
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35