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Query: [S] COG5572 Predicted integral membrane protein, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRGHDGYIVSSSPETGGLRGGEILFADHCNLGHPRNELSHDRAAQGRLGANPPGESLMTRTATTAALAAAIALSAGVSIAAADEHKAGAQTEKCYGVSKAGENDCKAGAGTSCAGTSKVDYQGDAWKMVKKGTCVTIKTPKGMGSLTPKALast
1 -29.300PF10048.9; Q5ZXR2_LEGPH/32-82; Predicted integral membrane protein (DUF2282 topsan)  ali follow..  44  1..........................................................................................MEKCQGVAKAGKNDCGTA-QHACAGQSKTDGSTTDWIYLPKGTCEKLVNGT......... 50
2 -7.810PF05608.12; Q1HTV4_SOLLC/52-187; Protein of unknown function (DUF778 topsan)  ali follow..  16  12..GHVG-ICREDGSAVAFSGSNFINIDDFALGSVAKYLQLDRKQCCFPRNLAAHTCKHGYKHTEFGSAITWDDAIQSSVRHFEHKSYNIFTCNSYSFVANCLNRLCYGGSMD...................................... 120
3 -7.800PF08692.10; J7S315_KAZNA/34-167; Mitochondrial protein Pet20  ali follow..  14  2........LPKVPMTKYLETRELLYSGYRPVMYPVRENPLFRNSNKLMAISHPEHDTEGTEGTHRDSQTVNTELFGNNNCGGINTLGCNGTWK-YAPKIPQKMLPFNWWSASSLAMEVYP----EWSSVPKHVVKGLK............ 130
4 -7.360PF12071.8; Q213T7_RHOPB/1-78; Protein of unknown function (DUF3551 topsan)  ali follow..  17  4................................................................LILAALAATSVAALAGASSSPAEAREYAYCLGRQQGYPGACDYSSFGQCKAAAS------------DADCSINPRFAYGVSRGP.. 78
5 -6.620PF11850.8; B2J1A2_NOSP7/35-458; Protein of unknown function (DUF3370 topsan)  ali follow..  15  15......TFNSNSPEL--VLQEGILLSTFPPDGKKVPTAHLNFPFRGRFDAEPSENLRSLYLGIILHNPSSEAVKVNIWQAASYLSQPDAPFIQLPSFSQNPLGTIFAGPGDRVMSRGRRQEIFPAQIEIPAKQSRML............. 154
6 -6.060PF17841.1; Q1QF79_NITHX/863-959; BID domain of Bartonella effector protein (Bep)  ali follow..  21  52........LAANPESGALRGKTGLLAGKADKQERQRAEANVPALKSDIER.................................................................................................... 94
7 -5.750PF10245.9; H3ALY8_LATCH/55-295; Mitochondrial 28S ribosomal protein S22  ali follow..  16  67.REPIDDVLAEDKVLEGLETAKVVFTDITYNIPHRERFIVVREPNGTLRKATWEERDRMIQIY....................................................................................... 128
8 -5.700PF18386.1; G0ML29_CAEBE/266-321; Roquin II domain  ali follow..  28  11.REHDSQIVQIAFESG--QWSALLYADQAHRSHMQSIIDK.............................................................................................................. 53
9 -5.670PF03647.13; C4R3T1_KOMPG/3-96; Transmembrane proteins 14C  ali follow..  13  14..GVMGYARKGSLPSGVTFSAIYAGAGYLLKNNMEYGVQTALGASTLMFIAGINRGIVSRYKKPVPIVLTILGAAST......................................................................... 91
10 -5.660PF02318.16; H3DKF6_TETNG/7-124; FYVE-type zinc finger  ali follow..  6  5......................................DEEAQHVWAVVQRDFDLRKKEEDRLGDLKTKIQKEDTKRELLGNQSRLTESYCIRCFKFLVNTKRQCLDCQLHICKSCSRYNKREQGWVCD---PCHM.............. 102
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.