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Query: [F] KOG1567 Ribonucleotide reductase, beta subunit, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADFLast
1 -80.400PF00268.21; RIR2_SHV21/5-277; Ribonucleotide reductase, small chain  ali follow..  19  1........................................KKYLYTCDHVGFLELTKETWKNRWFPSQVPLQGDVCCVDMLNERDLEFYKFLFTFLGMAEKLVNINIED-LLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYACDIMNDSALQEKLRWLNGRVTEASDKAEKILLFLLVEGIFFISSFFSIGLFRVRGIMNGICLANDYIARDEMLHTSAAALLYNTMTKSSERDWIYKLFREAVEVEFKFIAAKGY-GVSLVNVHEIRQFLQATADRILESINLNPIYGSLPPENC........................................ 272
2 -32.600PF11266.8; Q8DJB4_THEEB/11-228; Long-chain fatty aldehyde decarbonylase  ali follow..  12  1..............................................................................DYHSDRYKDAYSRINAIVIEGEQEAHDNYIDLAKLL---PQHQEELTRLAKMEARHKKGFEACGRNLSVTPDM--------EFAKAFFEKLRANFQRALAEGKTATCLLIQALIIESFA-----IAAYNIYIPMADPFARKITESVVKDEYSHLNFGEIWLKEHFESVKGELEEANRANLPLVWKMLNQVEADAKVLGMEKDALVEDFMIQYSGALENIGFTT.................................................. 207
3 -28.300PF11583.8; G0G4P5_AMYMS/7-282; P-aminobenzoate N-oxygenase AurF  ali follow..  12  6.................................................KTADRLLKSSANKFYDPVDIDWTAPLVEWDRLTPEQRIELGKVATTGLWFEILLMQMLLKEVYEQDPTSAHAQFALTEIADECRHSTMFARMASRIGCPAYGPVPWLRRLAKL---------------PTISYGPARYGAVLVAEEVL---DRLQREQMTDEGVQPLVRMVNRIHVLEEARHVTFAREEVTRGMAKLSKAEIGYQQFIIAVISYFVTRAFINPDVVGIRPRDGVEAALNNPHWQLQESG..................................................... 276
4 -21.200PF02332.18; G7ZAS0_AZOL4/60-290; Methane/Phenol/Toluene Hydroxylase  ali follow..  8...............................................GTPTYSKDWTALKCTDWHGFRVENARRAGAPQRFDKAWVTVLQNHVGAFKHAEYGLGTALM-RAQRYGYTQMVNNAILTNASYKLRFAQDLTLYLAEVGSDGGFDLDAGKAHWLDDPIWQPCREAVEHIRAATDFLEQYFAVNLVFEPLVGELFRSFVMQVAAAQNDFSTPSVISAAEADYERNLANAVELFALLLRD.......................................................................................................... 230
5 -19.400PF04305.14; C1MSR4_MICPC/21-274; Protein of unknown function (DUF455 topsan)  ali follow..  11  8...............................................KALMTEEIHSMWRTGVMTDARVKLVEPSCAPRLGKGGSPESRVAILHSLAHIESWAIDLSWDAIARFGRAEKFFEDFLAVAADEARHFSLLAARLVELGSS-------------YGALTAHDGLWESATETRDSLEARLVIEHCVHEARGLDVLPGTIAKFRRFGDDPSADLLEHVIYPEEITHCAAGVRWFTYLQNRMGGVRFHVIVRKHFKGILKPPFNDEARSRAGFQREWYE.................................................................... 254
6 -16.300PF03405.14; E1ZCJ2_CHLVA/69-399; Fatty acid desaturase  ali follow..  1....................................EQLDVVASMDKYAEEHVLPILKPVEKCWQAQDFDFLDHVHQLQQRTKEVPDDYFVCLVGDMITEEALPTYMAMLNTLD-APTPWGRWTRQWVAEENRHGDLMNKYCWLSGRVDLRQVE-----------VTIQNLIGSGMDPKTENNPYLGFIYTSFQERATKVSHGNTARMAAEYGDEVLGKVCGAIASDESRHEIAYTRIVDEFFRQDPNNAMLCFADMMRK........................................................................................... 227
7 -15.300PF05138.12; Q5P3I7_AROAE/1-255; Phenylacetic acid catabolic protein  ali follow..  11  2................................................................................TQQMTSPEHIEYVLRLGDNALILGQRLSEWCGH-APVLEEDMALANMSLDLIGQARMLLTHAGRLEGRGRDEDQLAFLRTEPNYRNLTL------CELPNQDFARTMVRNFLYSSFQ-----KLLWERLMTSSDAELAAIAAKSIKEARYHAQHAGDWVIRLGDGTAEARAQGALDYLWPYTAEFFDDTVAAAGVGPAWSELETAWEALAMPVLAEATLT................................................... 216
8 -12.000PF03070.16; Q9HJM8_THEAC/69-287; TENA/THI-4/PQQC family  ali follow..  1...............................................................WARMEFIAKFYAHPMEAMQKPTVPVLLGYVIEHRFFLKNWIRTLSMVIHS-TTSDDAFEYEVENVATEY-HLELLLRMGEALGMSRKRIMEYSPLPETSQAIEVWYGIS------NRYSWIDTMGAMHVLELVADRTLVDDGSPIHYSDYPEAVKNFLMEGYEADVGHAGEALKIVQAATMD--DLTTRSIMLRSMDAFYVYLNARMRRA.............................................................................. 219
9 -11.800PF10118.9; W5TCA2_9NOCA/20-279; Predicted metal-dependent hydrolase  ali follow..  12  6...................................................................RFDWDNTPLHWLASEPIASHVFNSLNLLLPEGERMFIETF-SEALPLIKDEKLREQVIGFMGQEAMHAETHNDSVQQVFRAHGVDVDSYARQMEYVFRKALGPRAGQDARAEFQTLVERLGFIATLEHF---FAFLGDWIINADLERFDAAPNMLDLYREEVEHRFVAHDVATYF............................................................................................................. 180
10 -11.600PF02915.17; O26850_METTH/9-145; Rubrerythrin  ali follow..  10  1..............................................................................ENLTKAFIGESQARNRYTFYAKIAKKEGF----------EQISEIFLTTADNEREHAKWLFRLINDLKKEVG--------------EDLSSIVVDAEAPLTLGTTDENLIAAIEGEHYENSEMYPEFADVAEEEGYPEIAKRLRAIAEAEKHHEERYRKLL................................................................................................................ 137
11 -9.910PF11251.8; C7PJT1_CHIPD/18-247; Protein of unknown function (DUF3050 topsan)  ali follow..  12  2..............................................IQHPLYPEMQRMDDIRAFMQYHVFAVWDFMSL----------LKSLQRNLTCTDIPWIPK---------GSAATRFLINEIVTGELSHFELYLQAMEQVGADTSGIKECLQQLERGKSLTAVINGLPPAVRGNEPVHVQAAVFTFGREDLIPDMFLALVNDLDKQFPGQISLFK-RHIEVDGDHHSHLGMEMVQELCGNDPQEEAAQASRAALEQRNALWNGI.................................................................................. 230
12 -9.480PF12981.7; B2IZC5_NOSP7/4-227; Domain of Unknown Function with PDB structure (DUF3865 topsan)  ali follow..  1.................................................NHLTKQLNQLLAQDYVAFSITENPVVQMLSQASFAQIAYVMQQYSIFPKELVGFTELARRKALG-AGWNGVAQELQENIDEEISHYTLLADGLEEGLGVA---------VKNTMPSVATSKLLRTVLSLFDRQVDYVLGATYAIEATSIPELTLIVKLVEWLHEGAIPKDLQYFLDEWEIEHEAGLRTSVAAYIQPEEFGEFAAGFRAMIDAMQVWWQELAQE............................................................................... 224

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.