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Query: [R] KOG2945 Predicted RNA-binding protein, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQLAEKHIVALMFPAIDVSTFTFVSGVKFYIMDNSGNNRYELLFMDDDDSSGLAQPQIAAVVAAPKKPEPAKAPKAPKSKSEKENKPVVAARKANAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANNQGRFNNNQRYGNKEGPPRVRTGEKFGKREFDRQSGSDRTGVKSIDKREGGGAHNWGSPKQDIEDLKTTGETSPQAEKEDSANEQSADPAVAAEEDESKQMTLDEWKALRDQRAKPNYNLRKAGEGAADNAEWKKMIVLSKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFNDGRKVGFRKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGPRNEGPRGEGYRNDGPRGEGFRGPRFNNGPSNGYENRQDNNRFGEKRRSAQKPLKVDDEAQFPTLCLast
1 -29.800PF04774.15; M1BTZ0_SOLTU/158-266; Hyaluronan / mRNA binding family  ali follow..  30  1..........................................................................................................................................................PRRVFDRRSGTGRGN--EFIKREGSGRGNWGTTADDIAPVTEEAEKQSGQEDAGDTNKDSSAAEPEEKEPEEKEMTLEEYEKVMEEKRKALVALKQEERK......................................................................................................................................................................... 108
2 -15.000PF16174.5; U3KN98_RABIT/5-152; Intracellular hyaluronan-binding protein 4 N-terminal  ali follow..  12  1...........................LQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERR....................................................................................................................................................................................................................................................................... 133
3 -9.000PF09964.9; U5LFJ5_9BACI/4-75; Uncharacterized protein conserved in bacteria (DUF2198 topsan)  ali follow..  19  1.....KYLSALLLPGLLVMFFTRVTALIAASVYKGYTDSWGLIVVDAFSLTAGFWYAQIMKQRAKK..................................................................................................................................................................................................................................................................................................................................................................... 72
4 -8.830PF03276.14; GAG_SFVCP/9-622; Spumavirus gag protein  ali follow..  12  409MMLSGQNIIRGYLP-----GQAVVTAMQQETFIQHLNAVYEILGLNARGQSIRASVTPQPRPSRGRGRGQSAPEPSQGPVNSGRGRQCPAPGQNDRGSNIQNQGQENSSQGGYNLRSRTYQPQRYGGGRGRRWNENTNNSETRPTEQSPQTPRPIQAGSGVRGNQSQTY-KPAAGRGGRGNQNRNQRSSGAGDS..................................................................................................................................................................................................................................... 614
5 -8.760PF01080.17; W4XU10_STRPU/68-474; Presenilin  ali follow..  8  145LRLQQLYLIVIYLPEWTLWTILAAIAVYDLFAVLCPKGPLRMLVETAQERDEQIFPALIYSSTMVWLVGMADIDSPPPKSKAKQEPPVEEHTAEENATATGTTVSGQEDQTVSSDQEVNGGFDTVFTERRERDLERSANSSVTSEDRRAAVRALRQNNGPSNRQPPVDEEEEEERGVKLGLGDF............................................................................................................................................................................................................................................... 338
6 -8.420PF09598.10; D7SLZ5_VITVI/1-72; Stm1  ali follow..  20  1.................................MATMNPFDLLGDDDSEDPSQLIAAQKIVPKKALAPTQAAAPAQQAKPAKLPSKPVPPAQAVREGKNESGR................................................................................................................................................................................................................................................................................................................................ 70
7 -8.380PF02398.16; NS7_FIPV/1-101; Coronavirus protein 7  ali follow..  25  21IQLLER---LLLSHLLNLTTVSNVLGVPDSSLRV---NCLQLLKPDCLDFNILHKVLAETR.......................................................................................................................................................................................................................................................................................................................................................................... 75
8 -8.140PF10316.9; P91077_CAEEL/14-286; Serpentine type 7TM GPCR chemoreceptor Srbc  ali follow..  8  97VAISIERVLAVFTPTVIVLILAISLGTLENVLRCAVDACFFSYWASDRSAMFALNFIFSGLLSIKLIFFNKPQHGNGHKEHSKINH................................................................................................................................................................................................................................................................................................................................................. 212
9 -7.730PF13493.6; F8GKK6_NITSI/400-506; Domain of unknown function (DUF4118 topsan)  ali follow..  6  22..FDLSNVVMILLLTVVGISIGRGPGAWAAALSVMLFDFFSFSVSDVQYLFTFALMLLVALTIGQLAAKLRFEATIANLR....................................................................................................................................................................................................................................................................................................................................................... 107
10 -7.680PF02950.17; CO16A_CONPL/1-79; Conotoxin  ali follow..  19  1MKLTCVMIVAVLF----LTAWTFVTA------------------DSIRALEDLFAKAPDEMENSGASPLNERDCRPVGQ........................................................................................................................................................................................................................................................................................................................................................ 57
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.