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Query: [R] KOG3116 Predicted C3H1-type Zn-finger protein, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQCRNMSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKRELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRTKPSVDDLDGSDDDDEEERPDATNGKAEVEKRSKKSKRKHRSKSDSESDSEASVFETDSDGSSGESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRKERRRRYSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKRRLast
1 -26.800PF13917.6; B9RZN5_RICCO/90-128; Zinc knuckle  ali follow..  79  1..................................................................................................AGGTAQCQKCFQTGHWTFECKNERVYMARPSRTQQLKNP............................................................................................................................................... 39
2 -7.390PF14787.6; GAK24_HUMAN/578-613; GAG-polyprotein viral zinc-finger  ali follow..  25  5........................................................................................................CPRCKKGKHWASQCRSKFDKNGQP........................................................................................................................................................ 28
3 -6.480PF14963.6; H3DF96_TETNG/13-269; Calcium signal-modulating cyclophilin ligand  ali follow..  10  1..............................................................................................SAAQKRAEIRRRKLLMNSE---------------ERMNRIVGCTTNSSENHEPRFHLDLDRTEPVSSSSSPKRSSAHGSRSHSATPERRASPLPGFSESLGGSLEDDLAGIRKRTRGDRVSDDLNSSARPGLQKYLSRFDDAMKLRGQLASEKPVQDRGSDA........................ 147
4 -6.450PF00029.19; Q5SNV2_DANRE/2-203; Connexin  ali follow..  14  50FVCNTQQPGCEQVCFDHFFPISQVRLWALQ-VSTPSLLVALHVAYREHRERKHKRRLYQDKGSIDGGLLFTYITSLVLKTSFEVGTLLAFYLLYSGFHVPRLLRCAECPN----SVDC-----YIARATEKKIF.................................................................................................................................................. 178
5 -6.440PF02101.15; W5K1T9_ASTMX/5-409; Ocular albinism type 1 protein  ali follow..  8  316.......................................................................................................................................................................TGLDVDLSLQPRRELAWDSASTSLVTAGGYNTMVASTLLYQSHVQEGKKLAGNGHHQASDAASVLSEGSESSTIEIHISSELRDGEEVDA....................... 405
6 -6.170PF08192.11; SSY5_YEAST/2-693; Peptidase family S64  ali follow..  13  7.......................................................................................................................NKKKNEEKENTDLPADNEQNAAETSSSNVSGNEERIDPNSHDTNPENANNDDASTTFGSSIQSSSIFSRGRMTYGTGASSSMATSEMRSHSSGHSGSKNSKNLQGFKDVGKPLRAVSFLSPVKEEESQDTQNTLDVSSSTSSTLATSENARENSFTSRRS. 166
7 -6.140PF11671.8; Q2F462_APICE/35-155; Complementary sex determiner protein  ali follow..  11  2...................................................................................................................................................................................................................................SRKRYSRSREREKKSYKNENSYREYRKTSRNRRERSREHLSNNYNYRNSYNKN 54
8 -6.120PF15376.6; F1QJT2_DANRE/24-1319; Domain of unknown function (DUF4603 topsan)  ali follow..  11  93VQCLRSASDENSGIESLVEEL-----SKLKDIQNKQKEKEKHGIKKSDISQSPEPDESLSSKDQVEMYYEAFPPLSEKPVCLQEIMTVWNTAKACTYSSSSSSAVPQ-------STDTSSPKDCTSEGEAFKDRTVDAPSSTSTTSEKAQQRRTKREKENRFHGSATGMPDDQVAPHSKRQARHRSEGRFRPRSWSSGSSEAGSSSSGNQGDQAPSCKSVRIRHKSREVSGRNKKGRSGGGQVKLALKVIDKEERKNARGNMSTTGGPPKQQQHYMKKGK 362
9 -6.070PF12051.8; A3LY90_PICST/17-405; Protein of unknown function (DUF3533 topsan)  ali follow..  5  36........NADTQVGELPAIVGPIVANYFNLTSIQSLGSFDIWDFERISTLAISHNNTITEEVYRQVHHQKYWAAF---------------------RPNSTLDWVSAMEAESTAFSPAVLLEAIYETGRDFNAVNLYISSIVNQIIRYYNAYIQQTPLVEDLLSTLNSTQQVNVISNAPGLLTTPPTFVINDRLPVSNQIVQAPFQ......................................................................... 215
10 -6.010PF10041.9; A1SES2_NOCSJ/1-78; Uncharacterized conserved protein (DUF2277 topsan)  ali follow..  27  1.MCRNIRPLNNFEPPATRDEVAAAALQYVRKVSGTTKPSQANQAA........................................................................................................................................................................................................................................... 44
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.