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Query: [C] KOG4631 NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit, from VFDB

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGGGHHEPFKIPNYSIYSNFRDFPQLAQHEKRLAQIGLKDPWIRNYVYLYDRKYPHVVGQWAHFKKLILPGWKAGVAFTAALIFVEEAYQYKTHGTTSWDGHHLast
1 -25.300PF08122.12; B6Q2A1_TALMQ/27-79; NADH-ubiquinone oxidoreductase B12 subunit family  ali follow..  24  1......................................KDPWARHEAWRYTGPFSRWNR-----FKGLFPGLGTATVLFAGYLAYEQVFLSKDHEH....... 53
2 -8.170PF02322.15; C6X9F9_METGS/10-365; Cytochrome bd terminal oxidase subunit II  ali follow..  12  37...........................DDERRVIINSVGPVWEGNQTWLITAG-GAIFAAWPLVYAAAFSGLYVALLLVLFALFFRPVGFDYRSKMESPAWRN 111
3 -8.010PF05987.13; Q1LJK3_CUPMC/21-349; Bacterial protein of unknown function (DUF898 topsan)  ali follow..  12  18.........................IVNALLSIITLGIYSAWAKVRTLQYNTQLDGATFDYHGSPTAILKGRAIVFVLALAYNLASHAS.............. 84
4 -7.270PF04402.14; A9CI84_AGRFC/38-243; Protein of unknown function (DUF541 topsan)  ali follow..  15  5...GEGQAAIAPDMAILSF-ENSKALAEVLKALKEAAIEDRDLQTSNFSVQPLYKHYEPKDGVYVAPEITGYQVSNGLTVRVRDLKML............... 102
5 -6.960PF03574.15; K9PVK6_9CYAN/56-204; Peptidase family S48  ali follow..  11  11TGHLHHIEPK----RVKVIVREIESALREGQLLKMLGSQEPWLEHYPLKAGKSPMSGNQLSPEHRDYFEQRLPQDLPQAQVISSLQ................. 101
6 -6.840PF06219.12; F6H156_VITVI/1-440; Protein of unknown function (DUF1005 topsan)  ali follow..  10  260..........VASPGSDRVSRSNPGSWLILR--PGDGTWKPWGRLEAWRERGSSDGLGYRFELIPDTNGGMGAAGIVLSESTLGSNK................ 334
7 -6.400PF14421.6; C1N795_MICPC/486-700; A distinct subfamily of CDD/CDA-like deaminases  ali follow..  8  5..............RMVDEMKKHRDAYVAAASEKTNELGAFWLRKTRKPVLAVLCVRKKGKTGRGHEFYRGVNLEVSMPTGSLCSER................ 77
8 -6.120PF13630.6; F3ZYM8_MAHA5/143-212; SdpI/YhfL protein family  ali follow..  24  9....................................GIKTPWTDEDVWLKTHRLGGRLFVLAGILSMIGSFIGGTPAFILMMISV.................. 59
9 -6.080PF12404.8; D4ZC44_SHEVD/5-80; Peptidase  ali follow..  16  34....................DELRQIQQAARKLRSQGLSELWSVDSQWAFSLGFTTA.............................................. 76
10 -5.970PF10206.9; B5U217_NASVI/2-103; Mitochondrial F1F0-ATP synthase, subunit f  ali follow..  14  10............NPAIHGVYDPARYYGPRDTPFGQVKVGEAWIGRRNKSPQSFAALCSRAWWRWQHKYVQPKRTGVAPFFQLTFAGMALFYFLNYGRIKHHKN 102
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.