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Query: [P] COG0003 Oxyanion-translocating ATPase, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRVILMTGKGGVGKTSVAAATGLRCAELGHKTLVLSTDPAHSLADSFDLELGHEPRLVKENLWGAELDALMELEGNWGAVKRYITQVLQARGLDGVQAEELAILPGMDEIFGLVRMKRHYDEADYDVLIIDSAPTGTALRLLSLPEVGGWYMRRFYKPLQGMSVALRPLVEPLFRPIAGFSLPDKEVMDAPYEFYEQIEALEKVLTDNTQTSVRLVTNPEKMVLKESLRAHAYLSLYNVSTDLVIANRILPETIDDPFFQRWKSNQQVYKQEIYDNFHPLPVKEAPLFSEEMCGLAALERLKDTLYKDEDPSQVYYKENTINIVQGSNNDYSLELYLPGIPKEQIQLNKTGDELNVRIGNHRRNLVLPQALAALSPAGAKMEDDYLKIRFAEAVKRLast
1 -65.200d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  26  9.PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIAPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLTTEIAAFDEFTGL--LTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPM-----------------------AGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVGVSALSRLLSTQ........................................................................................... 295
2 -61.000d1ihua2 c.37.1.10 (A:308-583) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  25  20HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSLN--------NLQVSRIDPHEETERYRQHVLETKGKELDEAGKRLL--EEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGH------------------------------------FTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIDTRSPLLRMRAQQELPQIESVKRQH-ASRVALVPVLASEPTGIDKLKQLAG............................................................................................. 276
3 -21.200d3enda_ c.37.1.0 (A:) automated matches {Rhodobacter sphaeroides [TaxId: 272943]}  ali model 3D-neighbors follow..  16  3.KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDV--------LKDVDFHPEELRPEDFVFEGFNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFAAP---------------------------------------------------------------QHADQAVVVTANDFDSIYAMNRIIAAVQAKKVRLAGCVANRSRATDEVDRFCKETNFRRLAHMPDRRSRLKKKTLFEMDEDQDVLAARAEYIRLAESLWRGLDP..................................................................................... 250
4 -19.900d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}  ali model 3D-neighbors follow..  15  1MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVL-----TLREEGEDVELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAY-----TDDLDYVFYDVLGDVVCGGFAMP------------------------------------------------------------IREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIIC---------SRKVANEYELLDAFAKELGSQLIHFVPEYDPTCEQAEEYRELARKVDA......................................................................................... 246
5 -18.900d4v03a_ c.37.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  21  4..IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDAD-LRNLDMILG--LENRIVYDILDV----LEGRVPYEKALVKDKRGLSLWLLPANQRANKD--------IDIEKWNKTVEEIKNSGNYDYILVDSPAEKGFQIAVSPAD-----------------------------------------------------------------KALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEMVKRGAMLS--------VEDIVDILKAEIIGIIP.............................................................................................................. 204
6 -18.800d1wcv1_ c.37.1.0 (1:) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  17  2VRRIALANKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGEPLEGL----------------------------HPVDGFHLLPATPDLVGATALREALRDEGYDLVLLDAPPS--TLNALAAAEGVVVPVQAEYYALEGVAGLLATL-EEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHA.............................................................................................................................................................. 222
7 -16.400d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  20  5..ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDTMANLSLVLGVD-----------------DPDVTLHDVLAGEANVEDAIYMT------QFDNVYVLPGAVDWEHVLKLPEVIKSDKFDFILIDCPAG-DAMSAMLSGE-----------------------------------------------------------------EALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRY................................................................................................................................................... 173
8 -13.000d3ea0a1 c.37.1.0 (A:1-239) automated matches {Chlorobium tepidum [TaxId: 194439]}  ali model 3D-neighbors follow..  14  4..FGFVSAKGGDGGSCIAANFAFALSQEDIHVLAVDISLPFGDLDMY-LSGNTHSQDLADISNASDRLDKSLLDTMVQHISPSLDLIPSPATFEKIVNIEPERVSDLIHIA----------ASFYDYIIVDFGADHVGVWVLEHLD-----------------------------------------------------------------ELCIVTTPSLQSLRRAGQLLKLCKEFEKPISEIILNRA-------------DTNSRITSDEIEKVIGRPISKRIP.............................................................................................................. 203
9 -12.700d1yrba2 c.37.1.10 (A:1-245) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}  ali model 3D-neighbors follow..  12  2..IVVFVGTAGSGKTTLTGEFG-RYLEDNYKVAYVNLDTGVDVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLID---------TPGQMETFLFHEFGVRLMENLPYVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCS-PPVRVLYLSAKTREGFEDLETLAYEH.................................................................................................................................................................. 240
10 -11.600d1nksa_ c.37.1.1 (A:) Adenylate kinase {Sulfolobus acidocaldarius [TaxId: 2285]}  ali model 3D-neighbors follow..  12  1MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG------------------------------------DFMLATALKLGYAKDRDEMRKLSVEKQKKL----QIDAAKGIAEEARAGGEGYLFIDT--PSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKR------TTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK................................................................................................................................................................. 194
11 -10.500d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus elongatus PCC 7942 [TaxId: 1140]}  ali model 3D-neighbors follow..  12  27.SIILATGATGTGKTLLVSRFVENACANKERAILFAYE--------------ESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH-------------------LQIIKSEINDFKPARIAIDS----SALARGVSNNAFRQFVIGVTGYAKQEE-----ITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFM-ISDKGPDI........................................................................................................................................................... 224
12 -10.500d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  20  5..IIVFTGNG--GKTTAAFGTAARAVGHGKNVGVV---------QFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA----------------------VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVIS....................................................................................................................................................................................................................................................... 119
13 -10.000d4elda_ b.15.1.1 (A:) Small heat shock protein {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  28  19.....................................................................................................................................................................................................................................................................................................................................EGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAEEIYRTIKLPATVKEENAS-AKFENGVLSVILPKAESS 109
14 -9.970d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  12  24..VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEW----FEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEPFFDFVYLDCPREIRFAREND-KQNIQKFINRYWKAEDYYLETEEPIKRA................................................................................................................................................................................................................................ 193
15 -9.890d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLA-------------------LPVLRNADCSSGPGQRVCVID----------------------EIGKMELFSQLFIQAVRQTLST-------PGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLP--DIVTCVQS................................................................................................................................................................ 186
16 -9.850d3aaba_ b.15.1.0 (A:) automated matches {Sulfolobus tokodaii [TaxId: 273063]}  ali model 3D-neighbors follow..  22  12...............................................................................................................................................................................................................................................................................................................................PPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTS 105
17 -9.700d1khta_ c.37.1.1 (A:) Adenylate kinase {Methanococcus voltae [TaxId: 2188]}  ali model 3D-neighbors follow..  12  2.KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG-------------------------------------------SVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDT--PKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMS-------ETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR................................................................................................................................................................. 190
18 -9.670d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}  ali model 3D-neighbors follow..  10  4.RMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGAVAEGRETARGDRVAGMAAKQAYVVHEGVEYDVEV-DTT--------KESIECAWAIAAHVVP............................................................................................................................................................................................................................................... 178
19 -9.390d2yhsa2 c.37.1.10 (A:285-495) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  17  11..VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD----------------------TFRAAAVEQLQVWGQ-------------------RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQN---------------------------------------------KSHLMEELKKIVRVMKKLDV--EAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKL........................................................................................................................................................ 164
20 -9.340d1yksa1 c.37.1.14 (A:187-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}  ali model 3D-neighbors follow..  17  6.MTTVLDFHPGAGKTRRFLPQILAECRRRLRTLVLA--PTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGREVID--------------------------------MCHATLTYRMLEPTRVVNWEVIIMD......................................................................................................................................................................................................................................................................... 103
21 -9.290d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}  ali model 3D-neighbors follow..  18  12..LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA----------------------REQLRLLGE-------------------KVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQI-----------------------------------------------------EPLMGELARLKEVL-GPDEVLLVLDAMTGQEALSVARAFDEK-----VGVTGLVLTKL................................................................................................................................................... 159
22 -9.260d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus elongatus PCC 7942 [TaxId: 1140]}  ali model 3D-neighbors follow..  11  27.RSTLVSGTSGTGKTLFSIQFLYNIIEFDEPGVFVTFE--------------ETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSAL-----------IERINYAIQKYRARRVSIDSVTS--VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY------GPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFT-ITDHGINI........................................................................................................................................................... 233

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]