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Query: [J] COG0009 Putative translation factor (SUA5), from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTKRWFVDVTDELSTNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPDHPLALALIRESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGGPTGIGVESTVLSCADDIPVLLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGSPERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGRVIRLast
1 -77.300d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  25  1.....MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFS-RPSGDAMELMERILPGPYTVVLERNE-LIPDVITGGSSRVGIRVPDDEICRRIAA--RFPVTATSANISGKPPSPRLEEIVRDL-DAVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGPLDPVLLRGAGDV................................................................................................................................ 208
2 -69.500d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  24  1....MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYS-FVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSETESDPEEIKDRLEKQVDLIIHGGYLG-QKPTTVIDLTDDTPVVVREGVGDVKPF........................................................................................................................................ 205
3 -69.300d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  29  2..............NLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDLTDVQRETIFSRWPGPVTFVFPAPAT-TPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGAAFP-VVPGETGGRLNPSEIRDALTG--ELFR................................................................................................................................................. 186
4 -7.720d3kx2a2 c.37.1.19 (A:271-454) Pre-mRNA splicing factor DEAH RNA helicase Prp43 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  18  1..................................TYPVELYYTPEFQR--DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPL-SVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST----IAETSLTIDG-----------------IVYVVDPGFSKIRVESLLVSPISKASAQQRAGRAGRT-----------------------RPGKCFRLYTEEA...................................................................................................... 174
5 -6.590d2hi0a1 c.108.1.0 (A:1-239) automated matches {Lactobacillus delbrueckii [TaxId: 1584]}  ali model 3D-neighbors follow..  14  1MKYKAAIFDMDGTILDTSADLTSALNYAQTGHRHDFTVEDIKNFFGSGVV-VAVTRALAYEAGSSRESLVAFGTKDEQIPEAVTQ--TEVNRVLEVFFPGILDLMKNLRQKGVKLAVVSNKPNEAVQ----VLVEELFPGSFDFALGEKSGIRRKPAPDMTSECVKVLGVPRDKCVYIGDSEIDIQTA----SEMDEIAVNWGFRSVPFLQKHGATVIVDT............................................................................................................................. 228
6 -5.840d2gzxa_ c.1.9.0 (A:) automated matches {Staphylococcus aureus [TaxId: 196620]}  ali model 3D-neighbors follow..  12  58....IIGWHPVDAIDFTEEHLEWIESLAQHPKVIGI--EMGLDYHWDKSPADVQKEVFRKQAKRLKLPIIIHNREAQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVTVAKHVSME----RLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYE......................................................................................................................................................................... 238
7 -5.740d1j6oa1 c.1.9.12 (A:0-255) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  61.......VHPHDAKEVPEDFIEHLEKFAKDEKVVAI--ETGLDFFRNISPAEVQKRVFVEQAGKLNLPLVVHIRDAEAYEILRTESLPEKRGVIHAFIGGPVTY-------------NEALREVVKRVGLE----YIVLETDCPFLPPQPFRGKRNEPKYLKYVVETISQVLGVPEA......................................................................................................................................................................... 237
8 -5.730d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  73................DPYDVEDLRRLAAEEGVVAL--ETGLDYYYTPETKVRQQESFIHHGRELNKPVIVHTRDADTLAILREEKVTDCGGVLHCFFSGIVTF-------------AEQLRDAARYVPLD----RLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAV-----------GVAVEELAQVTTDNFARLFHIDASRLQSIR....................................................................................................................................... 265
9 -5.640d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  13  1....................................KTAFIWDLDGTLLDSSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLDVEVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGVESYFTE----ILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFA.............................................................................................................................................................. 170
10 -5.600d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  11  7........................................IWDLGGTLLDNAAFVETLALYGITQDHDSVYQALKVS-TPFAIETFAPNLENFLEKYFEGVSDLLEDISNQGGRHFLVSHRNDQVLEI----LEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISSGLVI--GDRPIDIEAG--QAAGLDTHLFTSIVNLRQVLD....................................................................................................................................... 186

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.