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Query: [G] COG0120 Ribose 5-phosphate isomerase, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTERNTSTDSPEKRAAGIAAAGLVSSGMLVGLGTGSTVAYTIKELGRRVREEGLDILGVVTSYQSEMLAIEAGIRLTTLAQHPELDLAIDGADQIDSELRAIKGGGAAHTREKIVSVSARRFVVVADESKTSKQLDKLVPVEVLPFAKEPVVKKIRELGGKPQLRSAVKKDGPVITDNGNFVLDVEFGVIKDPEALALQLSSIPGVVEHGIFCNVSELYIGNKDGAIKIITRQKLast
1 -57.900d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  39  2.......NVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEIDIVGVPTSYQAKLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLXADIVIVGTREGVKKLER................................................................................. 150
2 -57.900d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  37  1............................IVGVGTGSTAAHFIDALGTM---KGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILXADVALIGTPDGVKTIV.................................................................................. 125
3 -57.800d1uj6a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  36  1......RPLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLXLTRALVAGPFGVEELLP................................................................................. 152
4 -35.200d1uj6a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  45  3........................................................................................................................................GPVPVEIVPFGYRATLKAIADLGGEPELRM--DGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETG........................ 74
5 -35.000d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  45  2.......................................................................................................................................KFPLPVEVIPMARSAVARQLVKLGGRPEYR------QGVVTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLF...................... 72
6 -13.000d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  4..........NQRKLVARRALFEMRKGAVGNVGVGIADG-IGLVAREEGCADDFILQGIAFGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVIMGTGGFI-----ISATSKKIIFCGTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKLHLIEIAPGVDLQKDILDKMD............................. 218
7 -10.300d3k6ma2 c.124.1.3 (A:262-480) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  13  1...........VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLISFAMIRGGHVNLTMLGAMQVSKYGDLVKGMGGAM---DLVSSAKTKVVVTMEHSAKGNA---------------------KIMEKCTLPLTGKQCVNRIITEKAVFDVD---------RKKGLTLIELEGLTVDDIKKSTGCDFAVSPK.......... 211
8 -9.630d5mzwb_ c.124.1.0 (B:) automated matches {Myxococcus xanthus [TaxId: 246197]}  ali model 3D-neighbors follow..  16  3..........TPAETVVSLLARQIDDGGVVATGVASPLAILAIAVARATHAPDLTYLACVGSLDPEIPTLLPSSDLFDHARRGRVDTVFFGAAEVDAEGRTFPGVAGAA-----LRQWVRRPVLLVSRRNLVPEVQVTLISDLGVFELGASGARLLARHPWASAAH--------IAERTGFAFQVSEALSVTSLPDARTVAAIRAIDPHGYR...................... 235
9 -9.410d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]}  ali model 3D-neighbors follow..  13  6..........TNKEMQAVTIAKQIKNGQVVTVGTG--LPLIGASVAKRVYAPDCHIIVMAHCGCIWPNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVFTGSGGAN-----IATYSNTIIMMQHEKRRF--------MNKIDY-VTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILKFDEKTKRM--------YLAAYPTSSPEDVLENTGFDLDVSKAVELEAPDPAV 242
10 -8.370d3bera_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  49.......................LQGRDIIGLGSGKTGAFALPILNALLETPQRLFALVLTP--TRELAFQISEQFEALGSSIGVQSAV----------------GGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL-------------------------RALKYLVMDEADRILNMDFET-----EVDKILKVIPRDRKTFLFSATMTKKV.............. 202
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;