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Query: [E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWALast
1 -73.000d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  50  1....ADPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRTPAFGIITGKPLSI.......................................................................................................................................................................................................................................... 178
2 -72.900d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  48  1....................................................................................................................................................................................GGSLGRIEATARGASYTIREAAKVLGDTLKGKTIAIQGYGNAGYYLAKIMSEDFGKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW. 236
3 -71.500d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}  ali model 3D-neighbors follow..  29  1...............................................................................................................................................................................KARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKINVKYYIEVANMPTTNEALRFLQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLNLVAGANIVGFQKIADAMMAQGI. 253
4 -67.700d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}  ali model 3D-neighbors follow..  29  16.ADEPEFVQTVEEVLSSLGPVVDAHPALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTG............................................................................................................................................................................................................................................... 194
5 -67.500d1hwxa3 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  34  26.....DKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKFIGPGVDVPAPNMSTGEREMSWIADTYASTIGHNAHACVTGKPISQGG........................................................................................................................................................................................................................................ 207
6 -61.300d1hwxa4 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  33  2........................................................................................................................................................................................GRISATGRGVFHGIENFIENASPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGLDLRTAAYVNAIEKVFRVYNEAGVT 291
7 -51.000d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}  ali model 3D-neighbors follow..  28  3...........................................................................................................................................................................................FTTAVGVFEAMKATVAHRGLSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV------------------ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIDEAASDILHARGILYAPDFVANAGGAIHLVGREVLG-----WSESVVHERAVA-IGDTLNQVFEISDNDGVTPDEAARTLAGRRAREA....... 200
8 -51.000d3vpxa2 c.2.1.0 (A:145-363) automated matches {Sporosarcina psychrophila [TaxId: 1476]}  ali model 3D-neighbors follow..  22  2.........................................................................................................................................................................................PSPVTAYGIYYGMKAAAKEADDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIITDINEEAVQRAVDAF-----------------GATAVGINEIYSQEADIFAPCALGAIINDETIPQLKAKVIAGSANNQLKTRHGDLIHEMGIVYAPDYVINSGGVINVADELDG------YNRERALKRVEG-IYDVIGKIFAISKRDNIPTYVAADRMAEERIARVANTRST. 208
9 -48.400d3vpxa1 c.58.1.0 (A:1-133) automated matches {Sporosarcina psychrophila [TaxId: 1476]}  ali model 3D-neighbors follow..  23  1............................MEIFKYMEH--QDYEQLVICQDKASGLKAIIAIHDTTLGPALGGTRMWTYASIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPKTDKNDEMFRAFGRYIEGL-----NGRYITAEDVGTTEADMDLINLETDYV.......................................................................................................................................................................................................................................................... 133
10 -47.900d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}  ali model 3D-neighbors follow..  23  10.........................................GEMTVTRFDAMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTTEF---------VFGRSLERGGA....................................................................................................................................................................................................................................... 146
11 -11.200d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  10....................................................................................................................................................................................................LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP------------------INALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDIVCNIGHFDVEIDVKWL........................................................................................ 122
12 -10.200d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  21  3...........................................................................................................................................................................................QGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILN---NDPETCLNEYHLEIARITNPERLSGDLETALE-GADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVPEEAGAFIVATGRSDHPNQVNNL-GAVEKRSKITKNM--------SAVEAIARSCEPEPERIIPEAFDMKVHLNVYTAVK............... 219
13 -10.200d1ebua1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  1...............................................................................................................................................................................................................STKVVNVAVIGAGVVGSAFLDQLLAMTYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKPTNGFVYHEATVGAGLXAAVTAA............................................................... 156

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.