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Query: [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGGLast
1 -106.000d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  70  1......................ALPQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYG. 237
2 -96.800d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  31  1....................ASVSARTLHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA-YHTFADLKGKKVGLENGTTHQRYLQDKQQ--AITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPD---YAIMDERASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT...... 228
3 -94.600d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  24  1....................ATPKKDVYTIASDNSFAPFEFQNDDKQFTGIDVDLLNAIAKNQGFKLKWNFIGFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTDDSIKSWKDLKGKTLGAKNGTASFDYLNAHAKEYGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQK--------FATPIKPIPDGQYGFAVKKGNPELIEMFNNGLANLRANGEYDKIIDKYLESDA... 230
4 -94.400d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  29  4.................SFEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGG--PRTAKDLQGKVVGVQVGTTYMEAAQKIPG--IKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLEN------TLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRC. 235
5 -94.200d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  26  1.........................EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSL---SEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATID----LPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN.... 224
6 -93.800d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  26  5.................NWSKYQSNKSITIGFDSTFVPMGFAQKDGSYAGFDIDLATAVFEKYGITVNWQPIDWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVTKKSSG-ITTAKDMTGKTLGAQAGSSGYADFEANPEIANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVLNDYNVFT-----VGLETEAFAVGSRKEDTTLVKKINEAFSSLYKDGKFQEISQKWFGEDVAT. 245
7 -93.200d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  36  2.........................KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLLKFTKIFEGVKFGVQAGTSHEAFMKQMMP--SVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLT-DKPDNKDLKMFGPRM-TGGLFGKGVGVGIRKEDADLKALFDKAIDAAIADGTVQKLSQQWFGYDAS.. 253
8 -91.600d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  32  1..........................TVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDG-----ADLSGI-VAAQTATIQAGYIAE----SGATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMF------VGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDA... 215
9 -91.100d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  28  1........................SLNLTIGTSKFNPPFEVWSNNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK-ISTFDDLHGKKIGVRKGTPYARQVLSENR--NNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF....... 228
10 -89.900d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  30  1.........................KELVVGTDTSFMPFEFKQ-GDKYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTATIDWIKAHL--KPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGR-------KVAGAPVSGDKYGIGFPKGS-PLVAKVNAELARMKADGRYAKIYKKWFGSE.... 221
11 -88.700d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  23  1........................RGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKVKSYKDLDKPTLVTKFGVSAEYAAKRLFK--NAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGY------LVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKW.. 229
12 -88.400d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  24  1............AISGSLIERINNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVAHNDSN-IKSIADIKGVKTAQSLTSNYGEKAKA----AGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPN-AGVKIVWSAPADEK---VGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDIS.. 238
13 -88.300d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  34  1.................AIDEIKSRGYLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRLGVELKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDFPKTYEDLVGKTVAVQIGTTGDIEVSKY---DGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPD--------LVISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELK-KSPYDVLIEKWFS...... 226
14 -87.800d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  25  5......................KSKGKLVVALNPDFAPFEYVDGKNQIVGSDIELAKAIATELGVELELSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLAYQSVNDLAQKKVGAQKGSIQETMAKDLLQ--NSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNF-----EKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKASI... 236
15 -87.300d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  27  1.....................GATKKKVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP-VKNALDLKGKTIGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIE----DPKNFASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKEPKL. 230
16 -87.200d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  28  2.................NPLGLIDPTTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAG--ITDAAGLKGKRLGVVQGTLQEIYAEKNFA--GTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALK-------IAVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGTPM.. 234
17 -87.000d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  19  2......................VEGRTLNVAVSPASPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKILNNLNELNKYSIGYPRGMAYSDLIKNDLEPKGSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMP-------IESRYVFKNVDQLGIAFKKGS-PVRDDFNLWLKE-QGPQKISGIVDSWM....... 228
18 -85.300d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  19  1.....................RDRHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVALHRDGIMHEYLAERG--YGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENR------LTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVL.... 226
19 -85.000d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  20  1................TGWEQIKDKGKIVVATSGTLYPTSYHDTDDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSIKTLKDLKGKKAAGAATTVYMEVARKYGAK--EVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLN------TIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADV.. 239
20 -82.700d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  22  2.........................QTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSA-------IKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYS.. 232
21 -80.200d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  25  1..........................PLLVATR-VIPPFVLSN-KGELSGFSIDLWRSIATQIGIESKLIESSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGIRSIDDLPGKVVATTAGSTAATYLRE----HHISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGK------VEIVGSILREESYGIILPN-NSPYRKPINQALLNLKENGTYQSLYDKWFD...... 219
22 -79.100d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  18  1....................ARLKGITLRIGVIESVPFTIVANNTTKLTGYVLDLIEYLRDKMGFVADVPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTLIDGMDDKIPYNRIGIRIGTAGEDYYLREISGGSRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYCN--------TLVGEDFDKSTFGIVTPKEW-LYAKDLDVNILSLRETGILDNLKKKWFQTKA... 244
23 -78.800d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  19  1.........................KTVTLATVGTTNPFSY-EKKGKLTGYDIEVAKEVFKASDYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVVPKDSD-IKSYNDIAGHSTQVVQGNTTVPMLQKFNKNHENNNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGLDN------KVIDLPSDQKPYVYFIFAQDQKDLQKFVNKRLKKLYENGTLEKLSKKYLGGSYL.. 231
24 -76.700d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  24  8......................LSSGELKVGTTGDWDPMAMKDPTNKYKGFDIDVMQELAKDMGVKITFVPTEWKTIVSGITAGRYD-ISTSVTKTPKRAEVAGFTDSYYKYGTVPLVLKKNKKYSTWKSLNNKTIATTLGTSQEEKAKEFFPL--SKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLA-------IVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYNLKSL... 236
25 -76.700d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  16  1...........................LKVGVVG-NPPFVFYGENAAFTGISLDVWRAVAESQKWNSEYVRNSISAGITAVAEGELDILIGPISVTPERAEGITFTQPYFSSGIGLLIPGTATLFRSVGDLKNKEVAVVRDTTAVDWANF----YQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLN-------EVTEIRVSLEPYGFVLKE-NSPLQKTINVEMLNLLYSRVIAEFTERWLG...... 221
26 -76.000d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  21  8......................KQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN-ITSVEDLKDKTLLLNKGTTADAYFTQNYP--NIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFK-------MGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHF... 235
27 -75.000d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  17  8......................LESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEAFQTLEQIDGVTAIVNPGGTNEKFARANLK--KARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPE------LCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWL....... 232
28 -74.800d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  26  8......................KSTNEIIWGVKYDTRLFGMMDESRTVQGFDVDIAKAITKKINGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKGSQ-IKSVDDLNASTVLAVKGSTSAANIRQHAP--DAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPE---------ELVGGTFTNEPYGIAINKGQENFLKAVNQALEEMHADGTYDKIYQKWFPNET... 236
29 -74.700d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  19  7....................ELKEQGFARIAIA-NEPPFTAVGADGKVSGAAPDVAREIFKRLGVAVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLYKDIADNPDAKIGAPGGGTEEKLALEA-GVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKAND-PNVEVLAPVEGAPV---YCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSA.... 241
30 -69.900d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  20  7......................KSKGQLIVGVKNDVPHYALLDQTGEIKGFEVDVAKLLAKSIDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK-YKSLADMKGANIGVAQAATTKKAIGEAAKKIGVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDK----------SEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEH--KNEIDALAKKWG....... 230
31 -56.200d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  37...............MTNDSSMLDRLFSSLHSSNDTVPIKFKK---CCYGYCIDLLEQLAEDMNFDFDLKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSGIHDPKLHRFGTVRESSAEDYVRQSFPEEYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADCK------LLTVGKPFAIEGYGIGLPPNS-PLTSNISELISQYKSHGFMDVLHDKWYKVV.... 288
32 -52.200d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  15  13......................ADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVTVEELIAKLRSGEAD-MAGALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQ--AKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRY---GKLRIASAL----DLPPAEIALATTRGQTELMSILNKALYSISND-ELASIISRW........ 234
33 -45.300d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  18  1.........................NHLSIVT----APFEGMNVKKCCKGFCIDILKKLSRTVKFTYDLVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRRFGTVPNGSTERNIRNNYPYMHQYMTRFRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYI----FATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLT...... 275
34 -36.700d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  16  2.......................IGRHLRLGSVEE-QPFMFFATEGCWSGMVNDMVVKLSEDLGFTYEYTTNEWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGEGTTLNQVLELLDQKWGVIGSRHPETLLKTHRDSRYSRLVDEGVELKDLIETLRGGLFVFIDEGPVLAHNLISDCD--------VFSVGEEFQSFEYAFGLPKDSP-YKSLIDSHLLKFREEGFIDILWEKWSS...... 246
35 -33.500d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  55..........................................TVPQCCYGFCIDLLIKLARTMNFTYEVHLVAWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNKFIYATVKQSSVDIYFRRQVELSTMYRHESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD--------LVTTGELFFRSGFGIGMRKDSP-WKQNVSLSILKSHENGFMEDLDKTWVRYQ.... 285
36 -31.900d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  14  2..........................RYTVATRVG-KPYFSWRENERFEGYAVDLIYMLAQECKFDFNFEPVRWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVDQNKV-IRGGATSVYFSESNDTSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRN---------ELTQIGESFGEKHYGIAVPLN-ADFRSNLSVGILRLSERGELFKLRNKWFN...... 254
37 -30.500d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  1.......................GGVVLRVVT----EPFNVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVATWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHRMINRSNGSENNVLESQAGIQKVKYGN--AFVWDAAVLEYVAINDPD------CSFYTVGNTVADRGYGIALQHG-SPYRDVFSQRILELQQSGDMDILKHKWWPKN.... 260
38 -30.000d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  17  1........................NKTVVVTT----SPYVMMKKNERYEGYCVDLAAEIAKHCGFKYKLTIVGWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIALDSGSTKEFFRRSKIASAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKP-------CDTMKVGGNLDSKGYGIATPKGSS-LGNAVNLAVLKLNEQGLLDKLKNKWW....... 253
39 -16.400d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  13  37............................................................QFDGIPFYYAHMR-DIRVECLLNGVYDMAVVSYLSQNNLCIALELGPHTYVGEHQLICRKG-------ESGNVKRVGLDSRSADQKIMDVFFGDSDVERVDLS-YHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAV-----VLTRVDDYPMQQLLRAVVDAHQQRVVSGEQEPSY........ 228
40 -9.550d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  11  3.......................ETANIKLGY-VEAAPLIIAQEKGFFAKYGMTGVEVS----------KQANWASARDNVTIGSQGGGIDGLAQLITQGNGIAVAPMHEGKGVNLDITKAADYIKGFNKTNGRKFKAAHNVNQDFWIRYWFAAGGVDPDT--PPAETVQGMRNGTMDAFSTGDPWPYR-IVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQ................... 245
41 -9.140d4ddda_ c.94.1.0 (A:) automated matches {Ehrlichia chaffeensis [TaxId: 205920]}  ali model 3D-neighbors follow..  16  1.....................SLNREYILIGT-------------GSMTGVYYPIGGSICRFIKIICSISSTTGS--LNSIRYSNMDISIVQSDLEMLPMDNLRMLASLHKEYLTIVVKKSSN-ISVIDDIKGKRVNISPGTGVRVAMLKLLGEKGWTKKDFSKSSEQAQALCDNKIDVMVDVIGHPNASIQEASATCDIKFIP........................................................ 196
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]