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Query: [C] COG1151 6Fe-6S prismane cluster-containing protein, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSETISEKSEGRVSYHDSVEEMVKKIREDGMSNVFDRYALQEKIRCKFCLEGLSCQLCSNGPCRISEKTGQEKGVCGIGPDAMAMRNFLLKNIMGAGTYSHHAYEAYRTLKATAEGRTPFKITDENKLKWMCEKLGIDTAQSINDMAFELAVILEDQQRIGVEDQNVMVEAFAPKKRIEAWKKLGIYPAGTVHEEQNCVASCLTNVDGSHISLAMKALRLGIATIYNTQIGLEMVQDILFGTPTPHEVNMDLGIMDPEYVNIVFNGHQPWIGAATILKAKTPEIQDMAKQAGAKGLRVVGSIETGQELLQRFPVDEVFVGHMGNWLAIEPLLATGTVDIFAMEENCSPPAIDMYAEKYQVTLAAVSTIIDLPGVNYKFPYDPAQADETAQRLIELGIENFKKRKERQIKPHVPQKIQKAIAGFSTEAVLGALGNKLDPLVDVIAKGQIKGVVALANCSTLRNGPQDWVTINLTKELIKRDILVVSGGCGNHALEVAGLCTLDAANNIAGNGLKAVCNALKIPPVLSFGTCTDTGRISMLVTALAEHLNVDVPQLPIAVTAPEWMEQKATIDGIFALAYGAYTHLSPTPFMTGARQLVDLLTNKAEDVTGGKIALGDDPMKVANDIEDHIMRKRKELGLSLast
1 -132.000d2yivx_ e.26.1.2 (X:) Ni-containing carbon monoxide dehydrogenase {Carboxydothermus hydrogenoformans [TaxId: 129958]}  ali model 3D-neighbors follow..  30  2........RQNLKSTDRAVQQMLDKAKREGIQTVWDRYEAMKP-QCGFGETGLCCRHCLQGPCRINPFGDPKVGICGATAEVIVARGLDRSIAAGAAGHSGHAKHLAHTLKKAVQGAASYMIKDRTKLHSIAKRLGIPTEGQKDEDIALEVAKAALADFHEKDTPVLWVTTVLPPSRVKVLSAHGLIPAGIDHEIAEIMHRTSMGCDADAQNLLLGGLRCSLADLAGCY-MGTDLADILFGTPAPVVTESNLGVLKADAVNVAVHGHNPVLSDIIVSVSK--EMENEARAAGATGINVVGICCTGNEVLMRHGIPA-----CTHSVSQEMAMITGALDAMILDYQCIQPSVATIAECTGTTVITTMEMSKITGATHV-NFAEEAAVENAKQILRLAIDTFKRRKGKPVE--IPNIKTKVVAGFSTEAIINALSDPLKPLIDNVVNGNIRGVCLFAGCNNVKVP-QDQNFTTIARKLLKQNVLVVATGCGAGALMRHGFMDPANVDELCGDGLKAVLTAIPLPPVLHMGSCVDNSRAVALVAALANRLGVDLDRLPVVASAAEAMHEKAVAIGTWAVTIGLPTHIGVLPPITGSLPVTQILTSSVKDITGGYFIVELDPETAADKLLAAINERRAGLGLP 634
2 -91.000d1oa0a_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein) {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  16  1.................................................SNAMFCYQCQETVGNK---GCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLRAIDRLVTGNLFATITNANFDDDILAERVRMT--KELAASLTDKSGLSDAALWEASEKSAMLLITFGLKGMAAYAKHADVLGKHENSLDAFMQEALAKT-LDDSLSVADLVALTLETGKFG-VSAMALLDAANTGTYGHPEITKVNIGV----GSNPGILISGHDL------------RDLEMLLKQTEGTGVDVYTHSEMPAHYYPAFKKYAHFKGNYGNAWWKQKEEFESFNGPVLLTTNCLVPPKDSYKDRVYTTGI-----VGFTGCKHI-PGEIGEHKDFSAIIAHAKTCPA----------PTEIESGEIIGGFAHNQVL----ALADKVIDAVKSGAIKKFVVMAGCDGRAKSRS---YYTDFAEGLPKDTVILTAGCAKYRYNKLNLGDIG-----------------GIPRVLDAGQCNDSYSLAVIALKLKEVFGLEDVNDLPIVYNIAWYEQKAVIVLLALLSLGVKIHLGPTLPAFLSPNVAKVLVEQF----NIGGITSPQDDLKA................. 541
3 -14.400d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit {Moorella thermoacetica [TaxId: 1525]}  ali model 3D-neighbors follow..  8  3..........................................................................................................................................................................................................................................................................................DFDKIFEGAIPEGKEPVALFREV-------------YHGAITATSYAEILLNQAIRTYGPDHPVGYPDTAYYLPVIRC--FSGEEVKKLGDLPPILNRSPVLNFENARLAGEATWYAAEIIEALRYLKYKPDEPLLPPPWTG-----FIGDPVVRRFGIKMVDWTIPGEAIILGRAK-----DSKALAKIVKELMGMGFMLFICDEAVEQLLEENV----------KLGIDYI--------AYPLGNFTQIVHAANYALRAGMMFGYQRRRIRAFVLYLGEHDMVKTAAAFGAIFTGFPVITDQPLP.................................................. 283
4 -7.150d2jioa2 c.81.1.1 (A:4-600) automated matches {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  11  10......................................................CRYCGTG--------------CGVLVGVKDGKAV-LLCLKGSLLILNSKERVTQPLVRRHKGGKLEPVSWDEALDLMASRF--------RSSIDMYGPNSVAWYGSGQCLTEESYVA-------NKIFKGGFGTNNVDGNPRLCMASAVGGYV---TSFGKDEPMGTYADIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADGTDLAFMHSMAWVIINEELDNWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRQIYGAARAFAESAATMSLWCMGINQRVQGVFANNLIHNLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRA---IPNAKHRAEMEKLWGLPEGRIAPEPGYHTVALFEALGRGDVKCMIIC----ETNPAHTLPNLNKVHKAMSHPESFIVTLEYADLVLPPAFWCERDGVYGCGERRYSLTEKAVDPP-----GQCRPTVNTL---VEFARRAGVDPQLVNFRNAEDVWNEWRMVSKGTTYDFWGMT.......................................................... 536
5 -6.890d3ml1a1 c.81.1.1 (A:4-681) automated matches {Ralstonia eutropha [TaxId: 381666]}  ali model 3D-neighbors follow..  8  15.....................................................PCRFCGTG--------------CGV---TVAVKDNKVVATQGDPQAEVNKGLN------VKGYFLSKIMYGQDRLTRPLMRMKNGKYDKNGDFAPVTWDQAFDEME----------------------RQFKRVLKEKGPTAVGMFGSGQWTVWEGYAKLYKAGFRSNNIDPNARHCMASAGFMRTFGMDEPMGCYDDF----EAADAFVLWGSNMAEMHPILWTR-------TDRRLSHPKTRVVVLSTFTHRCFDLADIPQTDLAMLNYIA--NYIIRNNKVNKDFVNKHTVFKEGVTDIGYGLRPDHPLQKAAKNASAKFVSKYDADYVSKLSKAKLDQLAELYADPNIKVVTNPKHREEAERIWKLPPGTIPDKPGYDAVLQNRMLKDGKLNAYWVQV--NNNMQAAANLMEEGLPGYRNPANFIVVTALAADLVLPSAMWVEKEGAYGNAERRTQFWHQLVDAP-----GEARSDLWQL---VEFAKRFKVE......................................................................................... 543
6 -6.700d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]}  ali model 3D-neighbors follow..  9  15...................................................NMTCHFCIVG--------------CGYHVYKWPELEEGGRAPEQNALGLDFRKQLPPLAVTLTPAMTNVVTEHDGARYDIMVVPDKACVVNSGLSSTRMASYMYTPTGDGKERLSAPRLYAADEWVDTTWDHAMALYAGLIKKTLD--AGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATEMGIGELNNAYEDAQLAD----VIWSIGNNPYESQTNYQGATTSKKKERFPNENFPQARIIFVDPRETPSVAIARHVAGNDRVLGT----DTALFNGLFTYVVIDKPFIEAHTKGFDDAVKTNRLSLDECSNITGV------PVDMLKRAAEWSYKPKASGQAPRTMHAYEKGIIWGNDNYVIQSALLDLVIATHNAQALREAILQRSAIVKQAMQ----KARGATTEEMVDVIYEATQNGGLFVTLAEAAHLMLPAAHPGEMNLTSMNGERRIRLSEKFMDPP-----GTAMADCLIA---ARIANALRDM-AEMAAQFEGFDWKTEEDA...................................................................... 598
7 -6.650d4r5ra_ g.20.1.1 (A:) Kistrin (rhodostomin) {Agkistrodon rhodostoma [TaxId: 8717]}  ali model 3D-neighbors follow..  14  3............................................ECDCSSPENPC--CDAATCKLRPGAQCGEGLCCEQCKFKKKRTICRIPCTGQSADC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 64
8 -5.940d3h31a_ g.35.1.1 (A:) HIPIP (high potential iron protein) {Rhodothermus marinus [TaxId: 29549]}  ali model 3D-neighbors follow..  20  30.................................................YPDKTCANCQLGGCQLIKGPIHPNGYCTS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 68
9 -5.870d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}  ali model 3D-neighbors follow..  12  23.............................................................................................................................................................................................................................................ITAGDPDLATTAEALRLLDGCGADVIELGSDPYIDGPIIQASVARAL--------ASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRAKMKEAGVHGLIVPDL---AHSLWSEAKNNNLELVLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISK-----PEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNAL.............................................................................................................................................................. 260
10 -5.850d3wvta1 g.24.1.0 (A:40-97) automated matches {Horse (Equus caballus) [TaxId: 9796]}  ali model 3D-neighbors follow..  24  1...........................................PQCKYPVGTECCPKCSPGYRVKQACGELTGTVC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 36
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;