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Query: [K] COG1522 Transcriptional regulators, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKVELDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLDPGKIGLGLSAYINVRLEKQGGAPKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFVEDMDHFARFIRDQLLAHPAVIDVKSSFALERIKDTTALPVVVLast
1 -42.500d2p5va2 d.58.4.0 (A:66-158) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  50  1.................................................................LGLQAFIRVSIRKA------KDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLN. 90
2 -39.100d2p5va1 a.4.5.0 (A:3-65) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  63  1..QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVN................................................................................................. 63
3 -36.800d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  1..................................................................DVGCFIGIILKSAKD-------YPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP... 86
4 -36.600d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  39  1...MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGL................................................................................................ 63
5 -35.900d2pn6a2 d.58.4.0 (A:61-150) automated matches {Sulfolobus tokodaii [TaxId: 273063]}  ali model 3D-neighbors follow..  13  1...............................................................LDYIVITSVKAKYG--------KNYHVELGNKLAQIPGVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVMSIPEVERTSTQVVVKIIKESPNIVI.. 89
6 -35.600d2pn6a1 a.4.5.0 (A:1-60) automated matches {Sulfolobus tokodaii [TaxId: 273063]}  ali model 3D-neighbors follow..  33  1.....MDEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPASLN................................................................................................. 60
7 -35.300d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  29  2....LIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGY................................................................................................ 63
8 -32.000d2cyya2 d.58.4.2 (A:65-151) automated matches {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  25  1.................................................................YSMLAFILVKVKAGK--------YSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFL-DLIGSIPGVEGTHTMIVLKTHKETTELPIK. 87
9 -28.000d2cfxa2 d.58.4.2 (A:64-140) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  17  2...................................................................VSCIVEATVKNAD--------YERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDF----INKTSPYAQTVTHVIFSEIDTK....... 77
10 -27.000d1i1ga2 d.58.4.2 (A:62-141) LprA {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  16  1.................................................................YSLVTITGVDTKPEK--------LFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVCPAIILEKLK......... 80
11 -16.400d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  21  1........MKNEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR............................................................................................................ 46
12 -16.000d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}  ali model 3D-neighbors follow..  12  3VNDAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKM............................................................................................................ 56
13 -14.100d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  20  34LKPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLT............................................................................................. 102
14 -13.700d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  20  19.....ITDTDVAVLLKMEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVR............................................................................................................ 68
15 -13.500d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  25  11...........KEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITR............................................................................................................ 53
16 -13.500d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  12  23LNQHGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLT--DMEKNYQRIQERFGEEKLAQLLELLNELKKI............................................................ 134
17 -13.400d3bjaa1 a.4.5.0 (A:1-138) automated matches {Bacillus cereus [TaxId: 222523]}  ali model 3D-neighbors follow..  15  25IEQYDISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLT............................................................................................. 93
18 -13.300d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  28  28MEKQGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLT............................................................................................. 96
19 -13.300d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  15  27KPEVDMTIKEFILLTYLQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISIS............................................................................................. 97
20 -13.200d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  14  15......NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEIT----------------DFGMEEAKRFLSSLKAVID.......................................................... 96
21 -13.200d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  1...MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGV............................................................................................................... 48
22 -13.100d2bv6a1 a.4.5.28 (A:6-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  15  26FKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLT............................................................................................. 94
23 -13.000d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  15  26KKHLTLSFVEFTILAIIQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMD............................................................................................. 96
24 -13.000d4hbla1 a.4.5.0 (A:1-145) automated matches {Staphylococcus epidermidis [TaxId: 176279]}  ali model 3D-neighbors follow..  15  31LKQFGITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLT............................................................................................. 99
25 -13.000d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  15  23LRDFGITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVIT............................................................................................. 91
26 -13.000d4gxoa1 a.4.5.0 (A:7-141) automated matches {Staphylococcus aureus [TaxId: 426430]}  ali model 3D-neighbors follow..  15  25LKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLT............................................................................................. 93
27 -13.000d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  32  13LSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIE............................................................................................................. 65
28 -13.000d1sfxa1 a.4.5.50 (A:1-106) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  24  12LEKLSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR............................................................................................................. 64
29 -12.900d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  14  25KKKFNLNYEEIYILNHILESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVT............................................................................................. 95
30 -12.900d3e6ma_ a.4.5.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  18  36LASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILK.......................................................... 146
31 -12.800d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  18  26LDKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLT............................................................................................. 94
32 -12.700d2heoa_ a.4.5.19 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  18  1......DNLEQKILQVLSDDGGVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS............................................................................................................ 49
33 -12.700d2frha2 a.4.5.28 (A:102-224) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  5  26KKEFSISFEEFAVLTYINKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVN............................................................................................. 96
34 -12.600d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  1...LDMAEIKEKICDYLFNVSDSSALNLAKNIGLKARDINAVLIDMERQGDVY............................................................................................................. 51
35 -12.400d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  27LSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLT............................................................................................. 95
36 -12.300d3bpva_ a.4.5.0 (A:) automated matches {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  16  22LGHLNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVT-------------RRGEEIIPLILKVEERWEDLLFRDFTEDERKLFRKMCRRLAEEAVRM................................. 137
37 -12.200d2fa5a_ a.4.5.0 (A:) automated matches {Xanthomonas campestris [TaxId: 339]}  ali model 3D-neighbors follow..  22  32.DRYGMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALS............................................................................................. 99
38 -12.200d4awxb1 a.4.5.62 (B:1-79) automated matches {Klebsiella pneumoniae [TaxId: 573]}  ali model 3D-neighbors follow..  15  5..........MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVR............................................................................................................ 48
39 -12.200d1qbja_ a.4.5.19 (A:) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  11..........LKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK............................................................................................................ 54
40 -12.200d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  25EEISDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLT............................................................................................. 93
41 -12.200d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}  ali model 3D-neighbors follow..  22  2.....IDPAIVEVLLVLREAGIWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLT............................................................................................... 69
42 -12.100d3cjna_ a.4.5.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 246200]}  ali model 3D-neighbors follow..  17  31MTALGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLT............................................................................................. 99
43 -12.100d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  21  30......DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVN............................................................................................................. 76
44 -12.000d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  18  22FKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYAT............................................................................................. 90
45 -12.000d5eria1 a.4.5.0 (A:22-168) automated matches {Peptoclostridium difficile [TaxId: 1496]}  ali model 3D-neighbors follow..  14  27YKELKLQKGQFTFLTRICENPGINLVELSNMLKVDKATTTKAIQKLIKAGYVDKKQDKFDKRGYNLTPT............................................................................................. 95
46 -11.800d3mexa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  18  30CQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLT............................................................................................. 98
47 -11.600d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  15  19AKIHGLNKSVGAVYAIL-SDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKN-------YYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEE--KCNEEEKEFIKQKIKGIERMKKISEKILEAL......................... 147
48 -11.200d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  28  18......EDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVE............................................................................................................. 63
49 -11.100d1on2a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  13  1.TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLI............................................................................................................. 52
50 -11.000d5dd8a_ a.4.5.28 (A:) automated matches {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  21  55YAASGLNAAGWDLLLTLYRSAGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLT............................................................................................. 126
51 -10.700d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  14  11............VYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIH............................................................................................................. 51
52 -10.700d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}  ali model 3D-neighbors follow..  15  22AKKYDLTGTQMTIIDYLNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLT............................................................................................. 92
53 -10.700d2dtra1 a.4.5.24 (A:4-64) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae [TaxId: 1717]}  ali model 3D-neighbors follow..  20  4....TTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVV............................................................................................................. 52
54 -10.600d1y0ua1 a.4.5.5 (A:1-87) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  23  28......NPVRRKILRMLDKG--RSEEEIMQTLSLSKKQLDYHLKVLEAGFCIER............................................................................................................ 73
55 -10.600d1xnpa_ a.4.5.64 (A:) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  26  14......NETRRRILFLL-TKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIE............................................................................................................. 59
56 -10.500d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}  ali model 3D-neighbors follow..  12  1......RSNAEIVCEAIKTIGIATAAQLTRQLNMEKREVNKALYDLQRSAMVYS............................................................................................................ 50
57 -10.500d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  23  31....PVQFSQLVVLGAIDRGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLS............................................................................................. 96
58 -10.500d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  1MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGY............................................................................................................... 51
59 -10.400d2jsca_ a.4.5.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  21  10......DPTRCRILVALL-DGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVV............................................................................................................. 55
60 -10.300d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}  ali model 3D-neighbors follow..  11  3RTTRVAGILRDAIIDTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVA............................................................................................................. 56
61 -10.200d3jw4a_ a.4.5.0 (A:) automated matches {Clostridium acetobutylicum [TaxId: 1488]}  ali model 3D-neighbors follow..  10  23LAELGLNSQQGRMIGYIYENQEIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVL............................................................................................. 93
62 -10.200d5ffxa_ a.4.5.0 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  15  23LEQFDITNEQKHTLGYLHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLT--IFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ.......................................................... 138
63 -9.860d4aiha_ a.4.5.28 (A:) automated matches {Yersinia pseudotuberculosis [TaxId: 502800]}  ali model 3D-neighbors follow..  17  23LKPLELTQTHWVTLYNINRLPPQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLT............................................................................................. 92
64 -9.780d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  16  21LSHLGLSQARWLVLLHLARHRDPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLT--IAASVRNDVLTGIDESEQALCQQVLLRILANLE.......................................................... 135
65 -9.560d1tbxa1 a.4.5.48 (A:3-93) Hypothetical protein F93 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}  ali model 3D-neighbors follow..  19  11............VLAYLYDNEGIATYDLYKKVNMSTATFYDAKKFLIQEGFVKE............................................................................................................ 56
66 -9.440d3k2za1 a.4.5.0 (A:3-71) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  26  1....DLTERQRKVLLFIEEFIE-SVREIARRFRITPRGALLHLIALEKKGYIER............................................................................................................ 55
67 -9.370d3cuqa2 a.4.5.0 (A:176-252) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  1.....LNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLA.............................................................................................................. 47
68 -9.300d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}  ali model 3D-neighbors follow..  19  22......DPNRLRLLSLLA-RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVS............................................................................................................. 67
69 -9.250d1jmrb3 a.4.5.33 (B:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  30  9...........EILDFIKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLR............................................................................................................ 52
70 -9.230d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  1.....LTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLL.............................................................................................................. 47
71 -9.190d3gw2a_ a.4.5.0 (A:) automated matches {Mycobacterium bovis [TaxId: 233413]}  ali model 3D-neighbors follow..  15  18......NGRRLQILDLL-AQGERAVEAIATATGMNLTTASANLQALKSGGLVE............................................................................................................. 63
72 -9.130d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  10....GSDNQEKLVYQIIEDAGNIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKK................................................................................................... 70
73 -9.040d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  19  8............LAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIR............................................................................................................. 48
74 -9.020d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  15  4.......DLKSKIIRFFEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIRKEILIPDAQKL.................................................................................................. 72
75 -9.010d2lkpa_ a.4.5.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  26  31......TPSRLMILTQLR-NGPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVV............................................................................................................. 76
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.