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Query: [K] COG2101 TATA-box binding protein (TBP), component of TFIID and TFIIIB, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEREKITIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGAKNIEDVKRTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVGLILast
1 -43.600d1pcza2 d.129.1.1 (A:93-184) TATA-box binding protein (TBP), C-terminal domain {Pyrococcus woesei [TaxId: 2262]}  ali model 3D-neighbors follow..  52  1..........................................................................................KFKRAPQIDVQNMVFSGDIGREFNLDVVALTL--PNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKYGLL 92
2 -41.700d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Pyrococcus woesei [TaxId: 2262]}  ali model 3D-neighbors follow..  41  8................................................................................................KLRIENIVASVDLFAQLDLEKVLDLC--PNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGV. 92
3 -40.400d3eika1 d.129.1.0 (A:20-113) automated matches {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}  ali model 3D-neighbors follow..  37  3................................................................................................IPTLQNVVATVNLSCKLDLKNIALRA--RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGF. 87
4 -40.200d3eika2 d.129.1.0 (A:114-197) automated matches {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}  ali model 3D-neighbors follow..  41  1..................................................................................................KIQNIVSSCDIKFSIRLEGLAYAHS-NYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQH... 82
5 -7.450d2trcp_ c.47.1.6 (P:) Phosducin {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  99............................................................GFVYLETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLP-----------TLLVYKGGELIFISVAEQFAEDFFAADVESFLNEYGLL 214
6 -6.810d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  10  1YGYAVSVRVGGKEHRHWERYDID-SDFLIPADSFDFVIGRLGPEAAIPDLSGESCEVVIDGQIVMTGSKGSRELSLSGRDLAGFLVDCSAPQLNVKGMTVLDAAKKLAAPWPQIKAVVLKALGKIDIEPGETVWQALTHIANSVGLHPWLEPDGTLVVGG........................ 173
7 -6.320d3kjja1 d.79.1.0 (A:1-116) automated matches {Neisseria meningitidis [TaxId: 491]}  ali model 3D-neighbors follow..  23  21....................................................................................................................................................LIFLSGMVPENGETAAEQTADVLAQIDRWLAECG.. 54
8 -6.140d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  26  22....................................................................................................................................................FYYLNYCVGNVGQDIESQINGAFDEMERRLALVG.. 55
9 -5.990d1uila1 d.50.1.1 (A:8-107) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  25..................................................................................................................LNQYFQKEKIQGEYKYTQVGPDAEMTIYIKQLGRRIFAREH----GSNKKLAAQSCALSLVRQLYHLGVI 96
10 -5.850d5vcca_ a.104.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  257.ESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAV-LPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVKKDVEINGMFIPKGVVVMIPSYALHRKYWTEPEKFLPERFS----KDNIDPYIYTPFGSGPRNCIGMR---ALMNMKLALIRVLQNFSF. 437
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;