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Query: [R] COG2107 Predicted periplasmic solute-binding protein, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKIRVAHTPDADDAFMFYAMTHGKVDTWLEIEHVIEDIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKSEISLDGKRIAVPGRYTTANLLLKLAVEDFEPVEMPFDRIIQAVLDEEVDAGLLIHEGQITYADYGLKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAFAIENPDEAIEYAMKYSRGLDRERAKRFAMMYVNDYTYNMPESVDAALKKLYEMAEAKGLIKMPKLDILRLLast
1 -104.000d2czla1 c.94.1.1 (A:3-272) Hypothetical protein TTHA1568 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  38  1.ALRLGFSPCPNDTFIFYALVHGRVESPVPLEPVLEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALR--SGGALGRGVGPLVVARGPLEGLRVAVPGRHTTAYFLLSLYAQGFVPVEVRYDRILPMVAQGEVEAGLIIHESRFTYPRYGLVQVVDLGAWWEERTGLPLPLGAILARRDLGEGLIRALDEAVRRSVAYALAHPEEALDYMRAHAQELSDEVIWAHVHTYVNAFSLDVGEEGERAVARLFAEAEARGLAAPPRPLFV.. 270
2 -90.500d2i6ea1 c.94.1.1 (A:16-287) Hypothetical protein DR0370 {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  15  2..YRAGWIHFTNVAPILDSLELPP-----GVTAITGVPTQMNAALLSGEVDIANVSAVEFIRHADTLAALPDFSVAVLGPVYSVNLFHTCPLPERRVALTSQSAMSVALLEVLLRQKGLSPVLEEGTAESLLAAGYDGVLRIGDDALREWYGVGITVTDLAQEWFDLTGHPFTFAVWAYRKDNPPP--AALLQAMREARRRGIGHLAEVSQRHAEKL-----GLPERVVQHYLWNFRYHLEAPDRLGLREFADLAVPGH----AELTF... 272
3 -90.400d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  17  2.RPRVGHIQFLNCLPLYWGLARTGTLL--DFELTKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCDGPVMSCVIVSQVPLDGARVALGSTSRTSVRLAQLLLSERFGVQPDYCPPDLSLMMQEADAAVLIGDAALRANMIDGLDVHDLGALWKEWTGLPFVFAVWAARRDYEPVITRKVHEAFLASRNLSLEEVEKVAEQAARWE-----AFDEDTLAKYFTTLDFRFGAPQLEAVTEFARRVGPTTGFPAVKVELLK. 276
4 -18.100d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  13  12INNVVCAMPLPYTRLYEGLASGLKAQDGIPFYYAMRGADIRVECLLNGVYDMAVVSAAESYLSQNNLCIALELGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFGDS--VDLSYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQAT-----AVVLTRVD--DYPMQQLLRAVVDKHALLAHQQRVVSGEQEPS....................................................... 227
5 -15.700d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  8  6.NIKLGYIPIVEAAPLIIAQEKGFFAKY-GVEVSKQA-ASARDNVTIGSQGGGPHLITEGIITNGNKVPMYVLAQLITQGNGIAVIKGFNKTNGRKAAHTFPNVNQDFWIRYWFAAGG-LAVPPAETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMALTAQIWPYHPEEYLAIRADWVDKN--PKATKALLKGIMEAQQWIDDPKNRPEVVQIVSGRNYFNVPTTILESPFKGQYTMGDGQPAIDDFQKGPLYWKDGIGNVS........ 308
6 -9.150d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  8  12.VVRIGVFGYVDDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAKDSNITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKD-----VIAPAVKKGD--KELKEFIDNLIIKLGQEQ..................................................................... 221
7 -9.010d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  7  6.TIVVGG----RDYPPYEFIDQNGKPAGYNVELTRAIAEVMGSALKSGRVDV--LQGISWSEKRARQIDFTPPHTIVYHAIDSPPAAGLEDLRGRKVALHRDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDY--AVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAV----RQGDAELLARFSEGLAILRKTG..................................................................... 213
8 -8.750d3ir1a_ c.94.1.0 (A:) automated matches {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  10  2.EIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVFTDYVRPNLALAEGELDINVFQHKPYLDDFKDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLINPLTASKADIAENLKNIKIVELEAAQLPRDFAVVNGNYAISSGMKLTEALFQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSD......................................................................... 220
9 -8.650d4gota_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  10  5.EIVVAATKTPHA--ILKEAEPLLKEKGYTLKVKLSDYKMYNKALADKEVDANYFQHIPYLEQEMKENTDYKLVNAGAVHLEPFGIYSKT--DGATIILTNNVAEQGRMLAMLVETVDATLKDIKKNPKNLEFKKVAPELTYENKEGDAVFINVNYAIQNK---ESTKNNPYANIIAVRKGEEDSAKIKALMEVLHSK......................................................................... 228
10 -8.240d3up9a_ c.94.1.0 (A:) automated matches {Actinomyces odontolyticus [TaxId: 411466]}  ali model 3D-neighbors follow..  12  4.TLTVGATPSPHAKILTYINDNLAADAGIKLDIVYTDYVQPNTALNDGDLDANFYQTVPYLENAEKFEAGEGIHLEPLGVFSNKHKSLDELPDGGTIGIISDTANQSRALELL-EGDGDVNINTVTKLKNFDFREVEGPQLLDDFDYAVINGNFAQEGGKTIS-ESPVDNPAVNVLVWKGDSKKVDAIAKLEKLLHSD......................................................................... 222
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;