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Query: [R] COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIYEIAMLPVQKDKISEFRQAFGDVVPLLKRARGYRGHVLAQGVETPEVFNLIVRWRSLNDHTPGFEASEDHEQFMEGIQDYFSGEPTVYHLEGDNSGWSDYRHGKSGAALast
1 -42.800d3qmqa1 d.58.4.0 (A:1-96) automated matches {Escherichia coli [TaxId: 511145]}  ali model 3D-neighbors follow..  14  1MHVTLVEINVHEDKVDEFIEVFRQNHLGSVQEEGNLRFDVLQDPEVNSRFYIYEAYKD-EDAVAFHKTTPHYKTCVAKLESLMTGPRKKRLFNGLMP............. 96
2 -42.700d2bbea_ d.58.4.0 (A:) automated matches {Shewanella oneidensis [TaxId: 211586]}  ali model 3D-neighbors follow..  11  8QIVCVASFLSKEGKTEALIAALASLIPDTRREAGCIRYELNVSRDEPRRVTFVEKFVDIAA-FDEHCAKDAIQHYFHQVMPELVESFHVETYHQVIA............. 103
3 -41.500d4dpoa1 d.58.4.0 (A:3-96) automated matches {Methanosarcina mazei [TaxId: 192952]}  ali model 3D-neighbors follow..  15  2.IRVVAKNQVKPEKVQEFMNLCKSLIEETLKEEGCIDYGVYQELENPEILTMLEEWKDEGS-LDQHIRSDHFKEIFPLLSECLDKETEINIYRK................ 93
4 -40.700d3hx9a_ d.58.4.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  12  2.VVKINAIEVPAGAGPELEKRFAHRAHAVENSPGFLGFQLLRPVKGEERYFVVTHWESDEA-FQAWANGPAIAAHAGHRANPVATGASLLEFEVVLDVGGT......... 100
5 -40.600d1iuja_ d.58.4.5 (A:) Hypothetical protein TT1380 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  1MFVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEA-FRAWTESPAFKEGHARSKEAFLGPNRLEAFEVVLDS............ 101
6 -39.700d1x7va1 d.58.4.11 (A:1-97) Hypothetical protein PA3566 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  14  4PLTLIATITAAPGHAEALERELRALVAPSRAEAGCLQYDLHQDRHDSHLFYMIEQWRDDAA-LERHQNTEHFLRFSRGNEALLQNVKIDQLYR................. 95
7 -39.200d1y0ha_ d.58.4.11 (A:) Hypothetical protein Rv0793 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  15  5PVAVIARFMPRPDARSALRALLDAMITPTRAEDGCRSYDLYES-ADGGELVLFERYRSRIA-LDEHRGSPHYLNYRAQVGELLTRPVAVTVLAPLDEA............ 100
8 -37.700d1q8ba_ d.58.4.6 (A:) Hypothetical protein YjcS {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  12  2MHYITACLKIISDKDNEIMKEFKKLEEETNKEEGCITFHAYPLEPSERKIMLWEIWENEEA-VKIHFTKKHTIDVQKQELTEVEWLMKSN.................... 91
9 -36.100d2pd1a1 d.58.4.11 (A:1-100) Hypothetical protein NE2512 {Nitrosomonas europaea [TaxId: 915]}  ali model 3D-neighbors follow..  10  3KLALFVRLEAKPGQEAALADFLASALPLANAESGTTAWFALK--FGPSTFGVFDAFAD-EAGRQAHLNGQIAAALMANAATLLSSPPNIEKVELLAAKLPA......... 100
10 -36.100d1tuva_ d.58.4.11 (A:) Hypothetical protein YgiN {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1MLTVIAEIRTRPGQHQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAPDSIVMIEQWESIAH-LEAHLQTPHMKAYSEAVKGDVLEMN....................... 96
11 -33.200d2zdpa2 d.58.4.5 (A:1-108) Hypothetical protein PG130 (SAV0165) {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  11  1MFMAENRLQLQKGSAEETIERFYN-RQGIETIEGFQQMFVTKTLEDTDEVKILTIWESEDS-FNNWLNSDVFKEAHKNVRLKSDDDGQQSPI.................. 92
12 -28.900d1tz0a_ d.58.4.5 (A:) Hypothetical protein BC2969 {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  13  3MFIETKTFTVKEGTSNIVVERFTG-EGIIEKFEGFIDLSVLVKKRGDEEVVVMIRWESEEA-WKNWETSEEHLAGHRAGRGKPKPNVDHAVYYVKSSKAAY......... 107
13 -24.600d1lq9a_ d.58.4.3 (A:) Actinorhodin biosynthesis monooxygenase ActVa-Orf6 {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  10FVAVVTFPVDGPATQHKLVELATGGVQEIREVPGFLSATYHASTD-GTAVVNYAQWESEQAYRVNFGADPRSAELREALSSL............................ 91
14 -17.800d2yava_ d.58.4.17 (A:) automated matches {Acidianus ambivalens [TaxId: 2283]}  ali model 3D-neighbors follow..  20  158RVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEINTPQQYIVHVEWANTDALMFGMGRYPELRQVHDEVLDTLVYGPYIRILNPM............... 295
15 -14.700d1vqsa1 d.58.4.13 (A:1-104) Hypothetical protein Atu4242 {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  16  1MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSIGPINEIVHIWAFSSLDDRRARLMADPRWLSFLPKIRDLIEV......................... 89
16 -13.900d2go8a1 d.58.4.5 (A:3-110) Hypothetical protein YqjZ {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  11.YYAVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVR--EADGRGITVSYWDSMDA-INHWRHHTEHQAAKEKGRSVWYESYAVRVAKVD............... 101
17 -13.900d3bgua1 d.58.4.0 (A:1-97) automated matches {Thermobifida fusca [TaxId: 269800]}  ali model 3D-neighbors follow..  10  2GIRHIALFRWNDTVTPDQVEQVITALSKLPAAPELKNYAFGADLGLAADFAVVADLDGEDG-FRAYQDHPDHRAALAIIAPMLADRVAVQF................... 95
18 -13.900d2qyca1 d.58.4.0 (A:1-101) automated matches {Bordetella bronchiseptica [TaxId: 257310]}  ali model 3D-neighbors follow..  3MFLHVVMMEFDDGIDAGFFRTVDEYVARMKREDGLLLYHFGENVAARSTHATSSAFVDAAA-HDAYQVCPAHVAMKAFMGPRIKRVVVYDG................... 96
19 -13.600d3fmba1 d.58.4.0 (A:1-99) automated matches {Bacteroides fragilis [TaxId: 272559]}  ali model 3D-neighbors follow..  13  1MVKHIVLFKLRDDVPVEMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWALYSEFDNLDD-VKFYATHPEHVAAGKILAETKESRACVDY................... 97
20 -13.100d1tr0a_ d.58.4.4 (A:) Boiling stable protein 1 {European aspen (Populus tremula) [TaxId: 113636]}  ali model 3D-neighbors follow..  6LVKHTLLTRFKDEITREQIDNYINDYTNLLDLPSMKSFNWGTDLGMESTHAFESTFESKSG-LQEYLDSAALAAFAEGFLPTLSQRLVIDY................... 103
21 -12.900d3hf5a1 d.58.4.19 (A:1-107) automated matches {Pseudomonas reinekei [TaxId: 395598]}  ali model 3D-neighbors follow..  11  1MIRILYLLVKPESSHEQFRKECVVHFQMSAGMPGLHKYEVRLVAGNPTD--IGECWFASEEQYQVYMESDIRKAWFEHGKYFIGQLKPFVTEELV............... 107
22 -12.700d5xzta_ d.58.4.0 (A:) automated matches {Passiflora edulis [TaxId: 78168]}  ali model 3D-neighbors follow..  3IVRHIVFNRYKSQLSQKQIDQIIADYGNLQNIPEMKEWKWGTDLGPAVTHAYESTFHSVAD-FLNFFYSPPALEFAKEFFPACEKIVVLNY................... 100
23 -12.600d1rjja_ d.58.4.4 (A:) Hypothetical protein AT5G22580 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  5GFKHLVVVKFKEDTKVD--EILKGLENLVSQIDTVKSFEWGEDKESHDTHAFSMTFENKDG-YVAFTSHPLHVEFSAAFTAVIDKIVLLDF................... 98
24 -12.100d2pgca1 d.58.4.23 (A:1-206) Uncharacterized protein GOS_2596953 {Environmental samples [TaxId: 33858]}  ali model 3D-neighbors follow..  11  1MYVILTVASVDFSYRETMARLMSSYSKDLIDNAGAKGTRFGSIGDHAGSLIFIQFYDDLTGYLEIQSKSSVFKEIMDSGK.............................. 89
25 -12.000d2hiqa_ d.58.4.12 (A:) Hypothetical protein YdhR {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  2.TLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLW-KVWTESEKNHEAGGIYLFTDEKS------ALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQ....... 96
26 -11.800d2qlwa1 d.58.4.0 (A:2-106) automated matches {Rhizobium leguminosarum [TaxId: 386]}  ali model 3D-neighbors follow..  10  2LEKHAFKMQLNPGMEAEYRKRHDEIWPELVDQSGASDYSIHL--DRETNTLFGVLTRPKDHTMASLPDHPVMKKWWAHMADIMATNPD...................... 90
27 -11.400d5b08a_ d.58.4.0 (A:) automated matches {Cannabis sativa [TaxId: 3483]}  ali model 3D-neighbors follow..  2.VKHLIVLKFKDEITEAQKEEFFKTYVNLVNIPAMKDVYWGKDVTQKNTHIVEVTFESVET-IQDYIIHPAHVGFGDVYRSFWEKLLIFDY................... 96
28 -11.300d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus halodurans [TaxId: 86665]}  ali model 3D-neighbors follow..  11  3MMVKLIALYEQPEDKQAFDEHYFNTAPLTRKIPGLRDMKVTRIVGESKFYLMCEMYYDDHESLQQAMRTDEGKASGKDAMKFAGKLLTLMIGEEMD.............. 103

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.