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Query: [K] COG3432 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTYGYNIFTVIKFSDNVYKLQLIYYSMQLERRKRGTMEIMFDILRNCEPKCGITRVIYGAGINYVVAQKYLDQLVKVGALNIKTENDRKIYEITEKGKLLRTHIEEFIKIRENLYSAKEKVSELLRTDSELast
1 -42.900d4hw0a_ a.4.5.0 (A:) automated matches {Sulfolobus solfataricus [TaxId: 273057]}  ali model 3D-neighbors follow..  100  1................................KRGTMEIMFDILRNCEPKCGITRVIYGAGINYVVAQKYLDQLVKVGALNIKTENDRKIYEITEKGKLLRTHIEEFIKIRENLYSAKEKVSELLRTDSE 98
2 -35.100d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  30  1................................KKSKLEIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQ----YMLTKKGEELLEDIRKFNEMRKNMDQLKEKINSVLS.... 90
3 -18.100d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  20  19...............................................RAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFA........................ 77
4 -16.800d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  6  39.......................................VLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHQDGRRTRVSLSSEGRRNLYGNRAKRE-----EWLVRAMHACLDESER 127
5 -16.100d1y0ua1 a.4.5.5 (A:1-87) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  30......................................VRRKILRMLDKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGER----WVVTDAGKIV.............................. 87
6 -16.000d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  12  46..........................................ILWIALNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSNDKRNTYVQLTEEGTEVFWSLYHLFGKFPEVAEMMCMIRHIYGDD.. 154
7 -16.000d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}  ali model 3D-neighbors follow..  17  8.........................................EVLLVLATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSEADGRGHASLTQEGAALAAQL.......................... 79
8 -15.900d2jsca_ a.4.5.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  15  12..................................TRCRILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADS--HLARALGELVQVVLAVDTDQPCVAE....... 95
9 -15.700d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  14  17..................................VRLGIMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVRPRTVVEITDFGMEEAKRFSSLKAVIDGLD............... 99
10 -15.400d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  10  34..................................VEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERDERKILIHMDDAQQDHAE------QLLAQVNQLLADKDHLHLVFE. 125
11 -15.300d5dd8a_ a.4.5.28 (A:) automated matches {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  14  61................................NAAGWDLLLTLYRS-PEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRRDRRSASIRLTPQGRALVTHLATTQRVLAPLSQEQRTLEELAGR... 165
12 -15.300d3jw4a_ a.4.5.0 (A:) automated matches {Clostridium acetobutylicum [TaxId: 1488]}  ali model 3D-neighbors follow..  14  31..................................QQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRNNARQKNIYVLPKGAALVEEFNNIFLEVEE-KDEQKQLMSILIKVNR 135
13 -15.300d2lkpa_ a.4.5.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  10  33..................................SRLMILTQLRN---GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQL............................. 96
14 -15.000d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  8  35..................................KEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRDERNTYISISEEQREKIAER.......................... 107
15 -15.000d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  13  31.......................................VYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIERKNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEEEK 123
16 -14.900d2frha2 a.4.5.28 (A:102-224) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  7  34..................................EEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRDERTVLILVNAQQRKKIE------SLLSRVNKRITEANNEIE.... 122
17 -14.800d5ffxa_ a.4.5.0 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  10  30.................................NEQKHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQ-EEENEQMKANLTKMLS 135
18 -14.800d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  19  35..........................................ILQKIEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTADRRAYFLVITRKGEEVIEKVEKSSKILDYLKELKGVMERNF..... 139
19 -14.800d1tbxa1 a.4.5.48 (A:3-93) Hypothetical protein F93 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}  ali model 3D-neighbors follow..  16  11..........................................VLAYLNEGIATYDLYKKVNMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLKTAIETYKQI................ 88
20 -14.700d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  17  23.......................................MLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVESGSHQEYRLTDKGRALFPLLVAIRQ..................... 94
21 -14.700d4gcva_ a.4.5.0 (A:) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}  ali model 3D-neighbors follow..  22  18..........................................IMRDALQGLRRDEFSRSLDIAPNMLTRRLNALVEAGLLERQQRPLRYQYVPTAKGEDFRVVLMAFVA..................... 88
22 -14.600d3e6ma_ a.4.5.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  15  48..........................................LLSSLYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSADQRKRTVVLTRKGKKKLAEISPLINDFHA-PDKLQTCIEVLGEILK 146
23 -14.500d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  37..........................................AFLYVFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREVDRRTYRVVLTEKGKEIFGEILSNEEDFKVVSEGFNRMVEALSRE.. 140
24 -14.500d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  9  40..........................................VLASLHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTKDRRVIDLSLTDEGDIKFEEVLAGEEEMLQAAHITAKLAQAAETD.. 143
25 -14.400d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  16  33..................................EEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRDERTVIVYVTDTQKANIQKLISELE..................... 110
26 -14.300d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  15  35..........................................VIRILQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKDQRRVYVNLTEKGQQCFVSMSGDMEKNYQ-EEKLAQLLELLNELKK 133
27 -14.300d3mexa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  9  42..........................................VLKLIQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRESDQRSFQLFLTDEGLAIHQHAEAIMSRVHD-PVEQATLVHLLDQ... 137
28 -14.200d2fa5a_ a.4.5.0 (A:) automated matches {Xanthomonas campestris [TaxId: 339]}  ali model 3D-neighbors follow..  8  43..........................................VITILYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRREDDRRRSMLALSPAGRQVYE------TVAPLVNEMEQRLMSVFSAEEQ 129
29 -14.100d3bjaa1 a.4.5.0 (A:1-138) automated matches {Bacillus cereus [TaxId: 222523]}  ali model 3D-neighbors follow..  10  37..........................................VIQVLSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTENDQRETLVYLTKKGEETKKQVDVQYSDFLK-KEEEGILEDLLLKWKK 135
30 -14.100d4aiha_ a.4.5.28 (A:) automated matches {Yersinia pseudotuberculosis [TaxId: 502800]}  ali model 3D-neighbors follow..  16  39...........................................INRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHNDRRAKRIKLTEQSSPIIEQVDGVISSTRK-SDEIAVLSGLIDKLEK 134
31 -14.000d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  18  29.................................RGQYLYLVRVCE--NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQSNKKIKRIYATEKGKNVYPIIVEISQLADYLVRMRKNVSEDWEFVKK 143
32 -14.000d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  18  37...........................................LARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLEDRRAKHIVLTPKADVLIADIEAIAASVRN................. 109
33 -13.900d3gw2a_ a.4.5.0 (A:) automated matches {Mycobacterium bovis [TaxId: 233413]}  ali model 3D-neighbors follow..  18  20..................................RRLQILDLL---AQGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGE.................................. 78
34 -13.800d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}  ali model 3D-neighbors follow..  17  30..................................TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKKDSRQKCLKLTKKANKLETIILSYMDSDQS-KEEVVFLEKILKRMIE 134
35 -13.800d3cjna_ a.4.5.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 246200]}  ali model 3D-neighbors follow..  13  43..........................................ALAILKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREDDQRSSRVYLTPAGRAVYDRLQERQAFLATLNKMLANIRV....... 145
36 -13.600d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  14  7.......................................VLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQRG----HFLTLKGKEIRDKL.......................... 67
37 -13.600d3bpva_ a.4.5.0 (A:) automated matches {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  17  29.................................DAQVACLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREENRRRYILEVTRRGEEIIPLILKVEERWEDLEDERKLFRKMCRRLAE 132
38 -13.600d4hqma_ a.4.5.0 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  16  14................................RSWNGLIINYLSRSNDSSAHFSDMKRDLTITPRALSLKLSELAQWELVEKQIISTQIIYVLTEKGKALAEALHPIEA..................... 94
39 -13.600d2co5a1 a.4.5.48 (A:5-93) STIV F93 {Sulfolobus turreted icosahedral virus [TaxId: 269145]}  ali model 3D-neighbors follow..  16  1...............................KYMRINYYIILKVLVINGSRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHE........................ 82
40 -13.600d5eria1 a.4.5.0 (A:22-168) automated matches {Peptoclostridium difficile [TaxId: 1496]}  ali model 3D-neighbors follow..  17  34.................................KGQFTFLTRICE--NPGINLVELSNMLKVDKATTTKAIQKLIKAGYVDKKFDKRGYNLTPTDKSLEVYELIIEEENRSIEIDEEKQVVTKLLEKMSK 137
41 -13.600d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  15  32..................................NRAKITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQI............................. 96
42 -13.600d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  35..................................AQFKVLCSIRC--AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLNDKRGVLVKLTTGGAAICEQCHQLVG-----QDLHQELTKNLTADEV 126
43 -13.500d3pqka_ a.4.5.0 (A:) automated matches {Xylella fastidiosa [TaxId: 2371]}  ali model 3D-neighbors follow..  13  21..................................VRLMLVCTLVE---GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEA.................................. 79
44 -13.300d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  9  20................................TDTDVAVLLKMVEI-EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKYYSISSNILEKIRN........................... 95
45 -13.300d4k2ea_ a.4.5.0 (A:) automated matches {Vibrio cholerae [TaxId: 243277]}  ali model 3D-neighbors follow..  12  22..................................RRLQILCMLLD---NELSVGELSSRLELSQSALSQHLAWLRRDGLVNTRKEAQTVFYTLSSTEVKAM............................. 85
46 -13.300d4hbla1 a.4.5.0 (A:1-145) automated matches {Staphylococcus epidermidis [TaxId: 176279]}  ali model 3D-neighbors follow..  13  43..........................................VMLTLENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRESDKRQLIITLTDNGQQQQEAVDETKYVFEELEQTLKHLIE....... 145
47 -13.200d2bv6a1 a.4.5.28 (A:6-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  11  38..........................................VLTILESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNR... 127
48 -13.100d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}  ali model 3D-neighbors follow..  7  24..................................NRLRLLSLLAR---SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVAL............................. 87
49 -13.000d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  12  38..........................................ALLLLHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKEDERSVLISLTEDGALLKEKAVDIPGTILGLSKQSGEDLKQLKS... 127
50 -13.000d3df8a1 a.4.5.0 (A:1-106) automated matches {Thermoplasma volcanium [TaxId: 50339]}  ali model 3D-neighbors follow..  16  28......................................LIISVLGNGSTRQNFNDIRSSIGISSTILSRRIKDLIDSGLVE-RRSGQITTYALTEKGMNVRNSLMPLLQYISVLDR.............. 105
51 -12.900d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  21  11......................................LASTILLLVAEKPSHGELAERLAGHMGNIYRVLADLEESGFLDTTVSPPRKIYRITPQGKLYLREIRSLEDMKRRIETLEERIKRVLQE... 114
52 -12.700d4ejoa1 a.4.5.0 (A:1-111) automated matches {Eggerthella lenta [TaxId: 479437]}  ali model 3D-neighbors follow..  17  15................................RRGTLVML--VLSQLREPAYGYALVKSLAIEANTLYPLMRRLESQGLLASEGSKPRKYYRTTDEGLRVLR------EVEAQWHVLCDGVGKLLETN.. 111
53 -12.600d4gxoa1 a.4.5.0 (A:7-141) automated matches {Staphylococcus aureus [TaxId: 426430]}  ali model 3D-neighbors follow..  14  37..........................................VLMAIDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTKDERNLQISLTEQGKAIKSPLAEIVKVFNEFNISEREASDIINNLRN 130
54 -12.600d4ggga_ a.4.5.5 (A:) automated matches {Staphylococcus aureus [TaxId: 158879]}  ali model 3D-neighbors follow..  11  17..................................NRIRIMELLSV---SEASVGHISHQLNLSQSNVSHQLKLLKSAHVVKAKRQGQSMIYSLDDI.................................. 75
55 -12.500d5icea1 a.4.5.0 (A:3-104) automated matches {Thalictrum flavum [TaxId: 150095]}  ali model 3D-neighbors follow..  14  34.......................................LANIIHNHGSPMTLSELSLHLPSQPVNLYRVLRYLVHMKLFTKSSIDGELRYGLAPPAKFLVK............................ 99
56 -12.400d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  16  20......................................TRRKILKLLNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMEKYYGRTADVFYI.............................. 87
57 -12.400d1xnpa_ a.4.5.64 (A:) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  16  16..................................TRRRILFLL---TKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEGRPRKYYMIKKGLRLE............................. 83
58 -12.000d1sfxa1 a.4.5.50 (A:1-106) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  13  18................................KPSDVRIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWIYSAEKPEKVLKEFKSSILGEIERIEKMFTD.......... 106
59 -12.000d3l7wa_ a.4.5.0 (A:) automated matches {Streptococcus mutans [TaxId: 210007]}  ali model 3D-neighbors follow..  16  6................................SALLIEYL--ILAIVSKHDSSQTIKLIASIKESTLYPILKKLEKAGYLQEHQGRRRKYYHLTDSGEKHLV------YLTKEWSVYKMTIDGIVEGRIR 104
60 -11.900d5hs7a1 a.4.5.0 (A:5-105) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  15  21..........................................IHVLMDGPKRFKEITETIMISQKMLAERLKELEQNEIVERQETPVKVIYTLTEKGTALQAVFQEMQAWADQFCEPGD........... 101
61 -11.700d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  13  30..........................................LVALRDGTHRFSDLRRKMGVSEKMLAQSLQALEQDGFLNRVVVPPHVEYSLTPLGEQVSDKVAALADWIELNLPQVLAQRE....... 114
62 -11.600d3elka_ a.4.5.0 (A:) automated matches {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  17  14..........................................ILKELVKRQKSMFETTGQALPQGSIYILLKTMKERGFVISEKGQQLTVYHITDAGKKFLC------DHSQALQLARKIIDDLLSTVD. 106
63 -11.500d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  23........................................ISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQL-LVERATGGKG---VLTRYGQRLIQLYDLLAQIQQKA................ 100
64 -11.400d2hgca1 a.4.5.77 (A:5-82) Uncharacterized protein YjcQ {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  16  1.....................................KLRYAILKEIFEGNTPLS-ENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHELTEKGENYLKENGTWSK..................... 77
65 -11.400d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  1......................................MKNEILEFLNRGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGM......................................... 53
66 -11.400d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  16  25..........................................MDELFQGTKRNGELMRALGITQRVLTDRLREMEKDGLVHREELPPRVEYTLTPEGYALYDALSSLCHWGETFAQKKARLN........ 108
67 -11.100d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  20  26..........................................IFQINRRIIRYGELKRAIGISEKMLIDELKFLCGKGLIKKKEVPPRVEYSLTPLGEKVLPIIDEIAK..................... 96
68 -11.100d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}  ali model 3D-neighbors follow..  18  32.......................................LVDHLL--AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRP-LRPTRLGMLLAD............................ 91
69 -10.800d4a5na_ a.4.5.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  20..........................................FYHMIDGKKRFNEFRRICSITQRMLTLQLRELEADGIVHREQVPPKVEYSLTEFGRTLEPIVLQMKE..................... 90
70 -10.800d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}  ali model 3D-neighbors follow..  8  1................................RSNAEIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS-DDIPPRWFMTT................................... 62
71 -10.800d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  13  1...........................KISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLLDVYHAVNV..................... 82
72 -10.700d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  10.............................LVKQRAFLKLY--MITMTEQERLYGKLLEVLRPNHTEVYRSLHELLDDGILKQIKLQEVVLYQFKDYEAAKLYK----KQLKVELDRCKKLIEKALSD... 118
73 -10.700d3k69a_ a.4.5.0 (A:) automated matches {Lactobacillus plantarum [TaxId: 1590]}  ali model 3D-neighbors follow..  10  1............................MKLDFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNG--YQLDLALADM-----NLGDLYDLTIP.............. 82
74 -10.600d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  19  1.....................................SLPHVILTVLSTRDATASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPDRKVYSITQAGRSALGEW.......................... 81
75 -10.500d4awxb1 a.4.5.62 (B:1-79) automated matches {Klebsiella pneumoniae [TaxId: 573]}  ali model 3D-neighbors follow..  7  1....................................MASLMEVRDMLAGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRISETSE.......................................... 54
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.