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Query: [S] COG3592 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEEETLLEQGYRKYRGADVDIYFNTNICAHSGNCVKGNAELFNLDRKPWIMPDNVPKEEAKRVIHTCPSGALQYIEKLast
1 -33.900d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}  ali model 3D-neighbors follow..  10  2..................KYTIVDKETCIACGACGAAAPDIYDYDEDGIAEVPDILIDDMMDAFEGCPTDSIKVADE 71
2 -33.900d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  16  1.................AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQEDEELYNCAKEAMEACPVSAITIEE. 65
3 -33.800d4id8a_ d.58.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316058]}  ali model 3D-neighbors follow..  22  1..................LTIHVDQDKCQGHARCKALAPELFDLDDYGNAVVPADLIDKAWLAKSNCPENAIDITED 65
4 -28.700d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  14  2.....................IEVNDDCMACEACVEICPDVFEMNEEGDVINPDSDLDCVEEAIDSCPAEAIVRS.. 58
5 -15.300d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  14  27....................VQIDEAKCIGCDTCSQYCPAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQ. 84
6 -14.500d1xera_ d.58.1.3 (A:) Ferredoxin {Sulfolobus sp. [TaxId: 2288]}  ali model 3D-neighbors follow..  14  37...................IVGVDFDLCIADGSCINACPNVFQWYDTPGHPASEKKADPVNEQVNVCPVAAIDVKP. 102
7 -13.800d4kt0c_ d.58.1.2 (C:) automated matches {Synechocystis sp. [TaxId: 1148]}  ali model 3D-neighbors follow..  10  2...................HSVKIYDTCIGCTQCVRACPDVLEMVPWDGCKAAQIASSPRTECETACPTDFLSIRVY 67
8 -13.700d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}  ali model 3D-neighbors follow..  15  1.......KDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNFDDTNCLLCGQCIIACPVAALS.... 80
9 -13.600d2fgoa_ d.58.1.1 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  12  1....................SLKITDDCINCDVCEPECPGAISQGEEIYVIDPNLCTECVGQCQQVCPVDCIPLDDA 63
10 -13.300d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}  ali model 3D-neighbors follow..  14  1....................AYVINEACISCGACEPECPVNAISSGDDRYVIDADTCIDCGACAGVCPVDAPVQA.. 55
11 -13.000d3iam32 d.58.1.0 (3:96-246) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  22  79....................VILDRERCIHCKRCVRYFEEVPGDEVLDFIEDFGLPSGFSGNITDICPVGALL.... 141
12 -12.100d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  10  86....QYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNQAIQFDPETHLPTVTDTCTGCTLCLSVCPIDCIRMVSR 163
13 -11.600d3mmca1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  11  7................DQEAVKEYASWMDIENEVVKLCPTGAIKWDGKELTIDNRECVRCMHCINKMPKALKPGDE. 66
14 -11.000d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  14  2....................SFVNPEKCDGCKACEYICPNTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVR.. 64
15 -10.600d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  27  51.ANFTALEAKGKELKGYKFRIQINTLDCMGCGNC-----------------------------ADICPPKEKALVMQ 97
16 -10.400d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  14  2.....................HVICEPCIGVKDCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIYPEED 59
17 -10.300d3iam9_ d.58.1.5 (9:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  16  24.......................GLEKCIGCSLCAAACPAYVEPAENDPENPVSAGERYAKVCEEACPTGAIVLGYD 93
18 -9.980d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  21  117............IIQYANGIVDFQSENCIGCGYCIAGCP--LNKEDNRVYKVDRVSVGQEPACVKTCPTGAIHFGT. 187
19 -9.490d1ti6b2 d.58.1.5 (B:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}  ali model 3D-neighbors follow..  10  84............VYQREDGIVLIDPEKAKGKKELLDTCPGVMYWNEEENVAQDESWAPKMPRCAHNCGSFVYEFLKT 159
20 -9.330d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  12  101..................VLFTPKTKDLEDYESVISACP--KVAESNQMAKIDRITNGLRPACVTSCPTGAMNFGD. 165
21 -9.230d6fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  12  1....................AFVVTDNCIKCKYCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 59
22 -9.140d2h88b2 a.1.2.1 (B:115-246) Succinate dehydogenase {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12  18.KDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCP-SYWWNGDKYLGPAVLMQATIMNCTRTCPKGL...... 115
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.