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Query: [K] COG3888 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLRDVLLRELKRARGLGIDQFQIEEMMGFSKSTVSEALKDLEEKGIIKRRTIGGKIKHVWLAEYYPYYDEKLLRIGCLRSTEYVKFVSVAKNYSESKGIDLIVRFYDDAISLMNDLSQGLLEFALAPIFTEIIYSISNRNSIILGAVASGGSGVYKNVNCNCGKILTSESSSMMILAREFAKTRKISEIAIFKDPRRAIKDYESFKAEYIVIWEPYASKIMGEKMASFSDVLDSFPCCGISVSENNRENRTLIEIVRLYKRSRFTAREDVIDIFAKSTSVSPKTAKASLENYIWDIKFYRSDLKKYLEFIGYPPIEEIIEKIYEEVLast
1 -41.100d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  10  2....................................................................PETANIKLGYIPIVEAPLIIAQEKGFFAKYGMTVEVSKQANWASARDNVTIGSQGGGIHLITEGIITNGNKVPMYVLAQLITQGNGIAGFNKTNGRKFKAAPNVNQDFWIRYWFAAGGVDIDLLAVPPAETVQGMRNGTMDAFSTGDPWPYRIVGYMAGLTAQIWPYHPEEYLAIRADWKNPKATKALLKGIMEAQQKNRPEVVQIVSNYFNVPTTILESPFKG-QYTMGDGQPAIDDFQKGPLYWKDGIGNVSYPY.. 311
2 -33.400d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  7  16...........................................................................VCAMPPYTRLYEGLASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGCRKGESGNVKRVGLDSRSADQKIMTDVFFGDS-DVERVDLSYHESLQRIVKGDVDAVIWNVVAENELTMLGLLTDDPRFLQATEAVVLTR---VDDYPMQQLLRAVVDKHALLAHQQRVVSGEQE................................................ 225
3 -18.500d2czla1 c.94.1.1 (A:3-272) Hypothetical protein TTHA1568 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  10  1........................................................................ALRLGFSPCPNDTFIFYALVHGRVESPVPLEPV-LEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRSGGALGRGVGPLVPLQALEGLRVAVPGRHTTAYFLLSLYAQGFVPVEVRY---DRILPMVAQGEVEAGLIIHESRFTYPRYGLVQVVDL---LPLGAILARRDLGEGRALDEAVRRSVAYALAHPEEALDYMRAHAEVIWAHVHTYVNAFSLD--VGEEGERAVARLFAEAEARGLAAPSPR.. 266
4 -18.200d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  8  1.......................................................................TRPRVGHIQFLNCLPLYWGLARTGTLLDFEL---TKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCDGPVMSCPLDRLDGARVALGSTSRTSVRLAQLLLSERFGVQPDYYTCPPDLSLMMQEADAAVLIGDAALRANMIDGVHDLGALWKEWTGLPFVFAVWAARRDKVHEAFLASRNLSLEEVEKVAEQAARWEAFDEDTLAKYFTTLDFR--FGAPQLEAVTEFARRVGPTTGFPADVK.. 271
5 -17.300d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  12  7....................................................................KSKGQLIVGVKNDVPHYALLDQATG--EIKGFEVDVAK--NAKTRGPLLDNGSVDAVIATFT---ITPERKRIYNFIGLLVLKEKKYKSLADMKGANIGVAQAATTKKAIGEAAKKIGIDVKFSFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKK......................................................... 228
6 -16.200d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}  ali model 3D-neighbors follow..  20  2.SNAEIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS.................................................................................................................................................................................................................................................................................... 51
7 -16.200d4ntla_ c.94.1.0 (A:) automated matches {Enterococcus faecalis [TaxId: 226185]}  ali model 3D-neighbors follow..  7  1......................................................................DKEITVAVQLES-SKDILEIAKKEAEKKGYKINIMEVSDNVAYNDAVQHDEADANFAQHQPFMEMFNKEKKADLVAVQPI-SKEYQDAKDLENAKVGIPSDPTNEGRALAILNANGVNITFESIDLLNLAKAYDEKDIAMVFCYPAYLEPATKDAILLEDKEASKHYALQVVTRKGEKDSEKIKVLKEAMTT------KEVAEYIKKNSK............................................... 235
8 -16.200d2i6ea1 c.94.1.1 (A:16-287) Hypothetical protein DR0370 {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  11  2.........................................................................YRAGWIHFTNVAPIL----SLELPPGVTA---ITGVPTQMNAALLSGEVDIANV---SAVEFIRHADTLAALPDFSVAVLGLFHTCPLPERRVALTSQSAMSVALLEVLLRQKGLSPVLERAEGTAESLLAAGYDGVLRIGDDALREWYGVVGPLTPERTMTFTFAVWAYRKDNPPPAALLQAMREARRRGIGHLAEVSQRHAEKLGLPERVVQHYLWNFRYH--LEAPDRLGLREFADLAVPGH......... 267
9 -15.900d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  9  33.......................................................................................VDLLNAIAKNQGFKLKWNFIG---AAVDSVQSGHADGMMSGMSQVFDYGSPYYSSNLTIATSSTDDSIKSWKDLKGKTLGAKNGTASFDYLNAHAKEYGYTVKTF-TDATTMYSSLNNGSINALMDDEPVIKYAIKQG-TPIKPIPDGQYGFAVKKGSNPELIEMFNNGLANLRA-----NGEYDKIIDKYLESD............................................. 229
10 -15.700d3up9a_ c.94.1.0 (A:) automated matches {Actinomyces odontolyticus [TaxId: 411466]}  ali model 3D-neighbors follow..  12  1.....................................................................DVVTLTVGATPSPHAKILTYINDNLAADAGIKLDIVEYTDYVQPNTALNDGDLDANFYQTVPYLENAEKQFGYNFEAGEGI-SNKHKSLDELDGGTIGIISDTANQSRALELLATQGLNFDFREVEGPQLVRSL--DDFDYAVINGNFAQEGISGDALVVESPVDNPAVNVLVWKGDSKKVDAIAKLEKLL------HSDEVKQYIEKTWS............................................... 233
11 -15.300d4ddda_ c.94.1.0 (A:) automated matches {Ehrlichia chaffeensis [TaxId: 205920]}  ali model 3D-neighbors follow..  10  1...................................................................SLNREYILIGVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEYLTIVVKKSSNISVIDDIKGKRVNISPGTGVRVAMLKLLGEKGWTKKDFELKSSEQAQALCDNKIDVMVD--PNASILDDRLIDDLHAKYPYYQKDIISGGLYNDSPDIQTVSVKASLVTTTELSNDLAYKIVKSIATHLRELRSALKTLTVQDMAKSSITPMHDGAERYYKEIGAIK...... 300
12 -15.300d3ir1a_ c.94.1.0 (A:) automated matches {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  10  1.......................................................................KEIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQV-PGKLKSLEEVDGSTVSAPNDPSNFARVLVMLDELGWSKADIAENLKNIQLPRSRADVDFAVVNGNYAISSGMKLTEALFQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNS------DAFKAYAHKRFE............................................... 231
13 -15.200d4qhqa_ c.94.1.0 (A:) automated matches {Burkholderia cenocepacia [TaxId: 216591]}  ali model 3D-neighbors follow..  15  1........................................................................VIKVGTVAGPDSEVWQVVQKVAKEKEGLNVKVIEFNDYVQPNAALDSGDLDANSFQHQPYLDSQVKQRGYKIVSAGLT-SKKFKSLKDLQGAKLAVPNDPSNENRALLLLQTQGVTVLDIAENPKKLQLPRVLSDVDAAVINTNYALAAQPTKDAIALESLTSPYANLIAVRAKDKDQPWVKKLVKAYQS------PEVKEFIKKQFK............................................... 234
14 -15.100d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  10  2.......................................................................QTITVGTGTQFPNVCFLDENGKL---TGYDVELVK-MDFSNLLVSLGAGKVDIVAHQMEKSKEREKK-NNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAGQGSNDTANQLKTGRADATISTPFFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIID-----DGTLKKLSEKWLGAD............................................. 230
15 -15.000d4oteb_ c.94.1.0 (B:) automated matches {Clostridium difficile [TaxId: 272563]}  ali model 3D-neighbors follow..  11  1....................................................................KDDKKIVVGATLVP-GGELLEELKPLIKEKGYTLEVKNFDDYILPNEALNNGEIDANLFQHEPYLKEAVKAKGYKIMAGKKL-SYKIKSVDEFKGDTIAISNNPSSCSKNLRYLESIGLSPKDIIENPKGIQIPSSLPDVTAAFIDTTYAVPADAKKNGIYTAPINDEYANLLAFRTEDKDSEKIKVLQDVLTS------DKARSLIEEKYK............................................... 233
16 -14.900d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  12  27.......................................................................................LDLWAEIAKGAGWTYKIQPMD---GLIPALQTQNIDVALSGMTKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKPKEIRQ---FPNIDQAYLALEAGRVDAAMHDTPFVNNEGKGRVKVAGAPVSGDK-YGIGFPKGSPLVAKVNAELARMKA-----DGRYAKIYKKWFGSEP............................................ 222
17 -14.900d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  14  25.......................................................................................IDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISIT---IFASGLQIMVRNLESGTGDIRSIDDLPGKVVATTAGSTAA----TYLREHHISVLEV-PKIEEAYKALQTKKADAVVFDAPYAANEGKGKVEIVGSILREES-YGIILPNNSPYRKPINQALLNLKE-----NGTYQSLYDKWFD............................................... 219
18 -14.800d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]}  ali model 3D-neighbors follow..  10  1.....................................................................KDETVGVGVLSEP-HARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVGNV-SRTYRHVSDFAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQNQVDGAVINGNYAIMASARRDGLAVEPDASAYANVLVVKRGNEADARVQAVLRALCG------GRVRTYLKERYK............................................... 233
19 -14.600d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  11  1.......................................................................KTVTLAT--VGTTNPFSYEKKG--KLTGYDIEVAK-TEWTSIFSGLDSDKYQIGANNISANKYLYSNPTASNPLVLVVPKDSDIKSYNDIAGHSTQVVQGNTTVPMLQKFNKNHEVKLNFTSEDLAHQIRNVSDGKYDFKISAETIIKEQGLDNLKVIDLPSDQKPYVYFIFA---QDQKDLQKFVNKRLKKLYEN-GTLEKLSKKYLGGSYLPDKKDM..................................... 237
20 -14.500d4gota_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  11  1....................................................................SGKKEIVVAATKTP-HAEILKEAEPLLKEKGYTLKVKVLSDYKMYNKALADKEVDANYFQHIPYLMKENTDYKLVNAGAVHLEPFGIYSKT--DGATIILTNNVAEQGRMLAMLENAGLNLEFKKVAPELTAKAYENKEGDAVFINVNYAIQNPKKDAIEVESTKNNPYANIIAVRKGEEDSAKIKALMEVLHS------KKIKDFIEKKYD............................................... 239
21 -14.200d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  10  1.........................................................................LKVGVVGNPPFVFYLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEG--IGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVDWANFY------ADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQN-LEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLY-----SRVIAEFTERWLG............................................... 221
22 -14.200d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  9  32.......................................................................................VELTRAIAEVMGMTVEFRL-GAWSEMFSALKSGRVDVLQGISWSQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVALHRDGIMHEYLAERGYGKDL---VLTPTPADALRLLAAGGCDYAVVAMVIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRK-----TGQYEAIRAKWLGVLE............................................ 227
23 -14.100d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  12  13....................................................................ADHPVVKVAVLNLFAPFTLFRTDEQLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKV---VTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQELMSILNKALYSISNDELASI....................................................... 230
24 -14.000d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  11  38.......................................................................................IELAKAIATELGVELELSPMS---NVLASVQSGKADLAISGVSKTDERSKV-TAKNKLIVKKSDLATYQSVNDLAQKKVGAQKGSIQETMAKDLLQNSSLVS---LPKNGNLITDLKSGQVDAVIFEEPFVENNPDLAIADLNFEKEQDDSYAVAMK---KDSKELKEAVDKTIQKLKES-GELDKLIEDAFKASIE........................................... 237
25 -14.000d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  23  1..MKNEILEFLNRHNG--GKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS.................................................................................................................................................................................................................................................................................... 47
26 -14.000d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  7  8....................................................................KQNGVVRIGVFGDKP----FGYVDEKGNNQGYDIALAK--EAANRVEFLKSNKVDI-ILANFTQTPQRAEQVDFC-LGVAVPKDSNITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLK---YDQNTETFAALMDKRGDALSHDNTLLFAWVKDHKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQ................................................................. 219
27 -13.800d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  13  1......................................................................SLNLTIGT--SKFNPPFEVWSGNNSSLYGFDIDLMQ-YIFDDLFPALKNREVDLVIASMI---ITDERKKHFIFSQYITTVDSKISTFDDLHGKKIGVRKGTPYARQVLSENRNNQVIF---YELIQDMLLGLSNNQVDASLM-EPYAYKLIGKKYKLIGKKISIGEGYSIMAN---PDQFVLIKKINKILLEMEAD............................................................ 217
28 -13.600d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  13  32.......................................................................................LELFSSYCQSRHCKLNITEYA---GMLGAVASGQADVAFSGISITDKRKKV-INSFYLVSMANHKITLNNLNELNKYSIGYPRGMAYSDLIKNDLEPKGYSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKEQGP................................................................. 217
29 -13.400d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  12  2...............................................................NPLGLIDPTTISVGTMGD------IELFLNVAGRLGFKKEQVVFTG--ALMPSVANGRFDVAAAAIGTT-TVDFSDGYLAGFLSVLTSEAGITDAAGLKGKRLGVVQGTLQEIYAEKNFAGTDLVK---FPDNNSAVSALNNGTVDAHFLDFEYSARYPALKIAVNIPSFDAPAGFVI------KGNDALRNALDKGLKEAMQD-GTWKKLHEKWFPGTP............................................ 233
30 -13.400d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  10  28.......................................................................................IDLAREISNKLGKTLDVREFS---ALILNLKQHRIDAVITGMSKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQE----AYLQSLSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFTIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRK-----EGVLAELEQKWGLNN............................................. 224
31 -13.200d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  13  1...........................................................TSGDNWSKYQSNKSITIGFDST------IDLATAVFEKYGITVNWQPID---LKEAELTKGTIDLIWNGYS---ATDERREKVAFQVLVTKKSSGITTAKDMTGKTLGAQAGSSGYADFEANPEILK-KEANQYQTFNEALIDLKNDRIDGLLIDRVYAAEGVLNDYNVFTVGLETEAFAVGSRKEDTTLVKKINEAFSSLYK-----DGKFQEISQKWFGED............................................. 242
32 -13.200d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  10  1..................................................................ASVSARTLHFGT--SATYAPYIDVANAVCKEMQAECSFTNQS---SLIPSLRFKKFDAVIAGMD---MTPKREQQVSFSAVVVTRKGAYHTFADLKGKKVGLENGTTHQRYLQDKQQAITPVA---YDSYLNAFTDLKNNRLEGVFG.................................................................................................................. 159
33 -13.100d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  10  1..................................................................ARLKGITLRIGVIESVPFTIVLDLIEYLRDKMGFVADVQLAPPNTSLVLALANGDYDIAIGDITVTIVAFSNSISDNSMRILMRKGTLIDGMDDLKYNRIGIRIGTAGEDYYLREISGGSRNFYPL-KSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNI-LTLVGEDFDKSTFGIVTPKEWLYAKDLDVNILSLRE-----TGILDNLKKKWFQTK............................................. 243
34 -13.100d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  8  1..............................................................TGWEQIKDKGKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVR-MGIDGMLTAVNSGQVDAAANDIDVTKDREEK-YSYGTAIVRKDDLSGIKTLKDLKGKKAAGAATTVYMEVARKYGAKEVIYD---NATNEQYLKDVANGRTDVILLQTLALAAFPDLNITIHPDIKYMPNKQALVMK---KSNAALQKKMNEALKEMSKD-GSLTKLSKQFFNKADVSKKIDADVQDVD............................... 251
35 -13.100d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  11  39.......................................................................................VDLGNAIAERLGLKPRWIAQS---TLLIQLNQGRFDFVIASHGIT-AVDFTNPHYCTGGVIVSRKGGPRTAKDLQGKVVGVQVGTTYMEAAQKIPGIKEVRT---YQRDPDALQDLLAGRIDTWIVAKEAIKERKLENTLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQ-----DGTYARISQKWFGED............................................. 232
36 -13.100d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  10  1..........................................................AISGSLIERINNKGTVTVGTEGT------VEVTRAVAEKLGVKVEFKETQ---SMMAGLKAGRFDVVANQVGLTSPERQATFDKS-AVLVAHNDSNIKSIADIKGVKTAQSLTSNYGEKAKAA------AQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKA-----DGTLKKLGEQFFGKD............................................. 236
37 -13.100d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  12  1...................................................................GATKKKVVVGT--DAAFAPFVDLLDAVMKAAGLDYELKNIG---PLFASLQSKEVDMGISGIT---ITDERKQSYDFQVILVKQGSPVKNALDLKGKTIGVQNATTGQEAAEKLFGKG--PHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPK-YGMIFPKNSELKAKVDEALKNVIN-----SGKYTEIYKKWFGKEPK........................................... 229
38 -13.000d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  11  36.......................................................................................VDLAKEIARRLGVELKIVDMT---GLIPSLLTKKIDVIISGMTITEERKKV-DAGQVIVVRKDSDFRPKTYEDLVGKTVAVQIGTTGD----IEVSKYDGIKVVRFDKFTDAFLELKRGRADAVVLDSATARVAKNPDLVISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELKKS------PYDVLIEKWFS............................................... 226
39 -13.000d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  12  1...................................................................AQEFITIGSGSTTGVYFPVATGIAKLVNDAVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAVVHVVARKDAGIRTVADLKGKRVVVDVGSGTEQNARQILEAYGLTFDDLRVSASQGIQLMQDKRADALFY--GASAIVDLNRIQAIAKKYPFYVGFNIPGGTYKGVDVTTPTVVQAMLIASERLSEETVYKFMKAVFGNLEAFKKI...................................... 262
40 -12.800d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  12  29.......................................................................................VDLAREMAKAMGVKLKLVPTS---GLIPGLVTEKFDIIISGMTISQERNLR-VVGQSLLVKKGLEKGVKSYKDLDKPELVTKFGVSAEYAAKRLFKNAKLKT---YDTEAEAVQEVLNGKADMFIFDLPFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKH................................................................. 212
41 -12.800d2heoa_ a.4.5.19 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  20  2.NLEQKILQVLSDDGGP-VAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS..................................................................................................................................................................................................................................................................................... 49
42 -12.700d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}  ali model 3D-neighbors follow..  14  10.SLVKKEVLSLNTNDY--TTAISLSNRLKINKKKINQQLYKLQKEDTVKMV.................................................................................................................................................................................................................................................................................... 57
43 -12.400d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  10  8....................................................................KSTNEIIWGVKYDTRLFGMMDIESR--TVQGFDVDIAK--TSKTRIPLLKNGNIDAIIATMT---ITDERKKQVDFQALLVKKGSQIKSVDDLNASTVLAVKGSTSAANIRQHAPDAKILE---LENYAEAFTALQSGQGDAMTTDNAILLADENPEYELVGGTFTNEPYGIAINKGQENFLKAVNQALEEMHA-----DGTYDKIYQKWFPNETE........................................... 237
44 -12.400d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  12  1....................................................................ALPQTVRIGT--DTTYAPFIDLGNEMCKRMQVKCTWVASD---ALIPSLKAKKIDAIISSLSQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVD-VVAYANQDLIYSDLTAGRLDAALQ.................................................................................................................. 160
45 -12.300d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  24  21.DTDVAVLLKMVEIEK-PITSEELADIFKLSKTTVENSLKKLIELGLVVRT.................................................................................................................................................................................................................................................................................... 69
46 -12.000d1qbja_ a.4.5.19 (A:) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  5.DQEQRILKFLEEGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK..................................................................................................................................................................................................................................................................................... 54
47 -11.700d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  1.......................................................................KTVRWCAVSEHEATKFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVVAVVKKDSGFQMNQLRGKKSCHTGRSAGWNIPIGLLYCDLPSTLNQYFGYSGAFKCLKDGAGDVAFV-DQYELLCLDNTRKPVDEHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNL................. 323
48 -11.600d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  8  6.................................................................EELKEQGFARIAIANEPPFTAVPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFMK--ILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEE----KLALEAGVPRDRVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKE-----SGEFAKIIEPYGFSAKAAMSTTREKL.................................. 252
49 -11.600d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  11  8....................................................................LSSGELKVGTTGDWDPMAMIDVMQELAKDMGVKITFVP-TEWKTIVSGITAGRYDISTSVTKTPKRAEVAGFT-TVPLVLKKNLKKYSTWKSLNNKTIATTLGTSQEEKAKEFFPLSKLQS---VESPARDFQEVLAGRADGNITSSTEANKLVVKYAIVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKS................................................................. 220
50 -11.400d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}  ali model 3D-neighbors follow..  20  31...QMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK.................................................................................................................................................................................................................................................................................... 78
51 -11.300d4awxb1 a.4.5.62 (B:1-79) automated matches {Klebsiella pneumoniae [TaxId: 573]}  ali model 3D-neighbors follow..  14  1MASLMEVRDMLALQGR--MEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI.................................................................................................................................................................................................................................................................................... 49
52 -11.300d1r9la_ c.94.1.1 (A:) Glycine betaine-binding periplasmic protein ProX {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  8  1................................................................ADLPGKGITVNPVQSTITEETFQTLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTA-LHDNMYEAAGGDKKFYREGVFVNGAA-FDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTHNQGNDTISRYKEGKPVFYYTWTPYWVSNETKLPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNE................................... 303
53 -11.200d3jw4a_ a.4.5.0 (A:) automated matches {Clostridium acetobutylicum [TaxId: 1488]}  ali model 3D-neighbors follow..  25  32...QGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR.................................................................................................................................................................................................................................................................................... 79
54 -11.200d2zzva_ c.94.1.0 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  7  1.....................................................................RRYRWRIQTAWDAGTVGYSLFQERVKELTDGQLEVQPFPAGADMFDAVKTGVLDGMNPFTLDIARRAFAEQGLFYVGPVQHDKKPIRRFEDFKGVKLRVPGGMIAEVF-------AAAGASTVLLPGGEVYPALERGVIDAADFVGPAVNYNLGAKYIIMGPPETPAIHQPVDLMDFTINLNRWRSLPKPLQERFIAAVHEYSWIHYAGIQKANLEAWPKYRQAGVEVRLSNEDVRKFRRLAKWAKMDKYSREAFASQ 310
55 -11.100d4pe3a_ c.94.1.0 (A:) automated matches {Rhodobacter sphaeroides [TaxId: 349101]}  ali model 3D-neighbors follow..  7  2........................................................................HFRFQSSDPAGNPNFELQADKVKELTNGEVTIELMPVGTETPDAIQAGLIDGHITDTSELMNELINPYGLQFIGVSTPGKVPLDTVEDLKGVKVRSPEGLIANVF-------AAAGANPVNLPSSEVYTSLDKGVIDAA----SVFSVNQDTGMNDIAPHPVYPGFHSLPLVEVSMNKQKWDALTPELQAKITEAQKIFQQTQIDTLHQRDLEAVEAAKA----HDWSDEERAKFRGIAKVAGQSEMAQKVYDTL 303
56 -11.100d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  15  8....................................................................LESGVLRVATTGDYKPFSYVDMAQRLAESLGAKLVVVPTS--PNLMRDFADDRFDIAMSGISINLERQRQ-RDGKTPITLCSEEARFQTLEQIDGVTAIVNPGGTNEKFARANLKKARI---LVHPDNVTIFQQIVDGKADLMMT.................................................................................................................. 168
57 -11.100d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}  ali model 3D-neighbors follow..  14  8.....EVLLVLRENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQLF............................................................................................................................................................................................................................................................. 80
58 -11.000d5ffxa_ a.4.5.0 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  29  32...QKHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY.................................................................................................................................................................................................................................................................................... 79
59 -11.000d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  15...EKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK................................................................................................................................................................................................................................................................................... 63
60 -10.900d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  14  4.DLKSKIIRFFLSHCEKKVKMDDLARCLDDTRLNISKTLNELQDNGLIE...................................................................................................................................................................................................................................................................................... 58
61 -10.900d4n4ua1 c.94.1.0 (A:24-326) automated matches {Bordetella bronchiseptica [TaxId: 257310]}  ali model 3D-neighbors follow..  7  24..........................................................................................MEDIEKNTGGEVKFRLRLAGSDITQAVGNGTVRFADDGFYPYVERDFGKQGVVVLGHFSFPARKLESLADIKGQKLRVSSPEQAAFV-------QRAGGIPVTLGGAEVPSALSAGTIDGALTASAGGGKIWGDMLKYNLRLPVNYFDGFYLVNK-----KAFEALSPEMQAKMRESVARQAPGTTAQIAKEEGEVTDALRQKGMVIPSTPAMEQAATDLVSGYWED.......... 281
62 -10.900d5i7ia_ c.94.1.0 (A:) automated matches {Uncultured marine [TaxId: 56765]}  ali model 3D-neighbors follow..  6  1......................................................................EVVLKFHSFPPMPANSVKPWSEKVLAESNGEIKVEIYPAMQQLVDQVRDGVVDIVWTVAGYT-VAASDLKDYKVLAVIHTKEKVIKSAADLNGMKMRGPTRVITKML-------EGLGATPVGMPVPAVAGALSKGVIDGMVVPWEIMPSFKLHELTKAHTTVSGSRGLYTTPFLFLMNKAKYESLSDEHKKVIDNNAGLALAKLAGQLGFEVPARKLALDAGGTIHSLSGGPLAEMKAAGEGLEKD.......... 290
63 -10.800d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  17  37......ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKR................................................................................................................................................................................................................................................................................... 82
64 -10.600d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  22  18LEAIEHIFEELDGNEGL-LVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELENLK............................................................................................................................................................................................................................................................ 91
65 -10.500d2frha2 a.4.5.28 (A:102-224) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  12  35...EFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKR................................................................................................................................................................................................................................................................................... 83
66 -10.400d2fmya2 a.4.5.0 (A:139-219) automated matches {Carboxydothermus hydrogenoformans [TaxId: 129958]}  ali model 3D-neighbors follow..  32  1.DARLRLAEFLVQAAMDGLNTEEIALMLGTTRQTVSVLLNDFKKMGILER..................................................................................................................................................................................................................................................................................... 62
67 -10.400d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}  ali model 3D-neighbors follow..  22  1.DIKQRIAGFFIDHANTDFTVEEIANLIGSSRQTTSTALNSLIKEGYISR..................................................................................................................................................................................................................................................................................... 62
68 -10.300d4mcoa1 c.94.1.1 (A:30-338) TRAP dicarboxylate transporter {Rhodoferax ferrireducens [TaxId: 338969]}  ali model 3D-neighbors follow..  10  1.........................................................................LKISHQFPGGTILVRNFAAEVEKRSKGAMKFEIYPGSSAQFSSMRKGALDMALIPLSYALTRVLQEKGIVLIS-VASRGKPVVEPEDAKGMKIRGGSREMDMIL-------KDAGAAVVSLPSNEIYAAMQTGAMDAAMT----STSFISFRLEEVAKTTGRTGAYWFMFEPLMMSKAIFDKLPKDQRDMLMTVGAEMEKFALEAAKKDDIDVAAVYQKAGAKVDLSDGTIKKWQDIADYGAKNEGCAKLLALA 305
69 -10.100d4n6da1 c.94.1.0 (A:28-339) automated matches {Desulfovibrio salexigens [TaxId: 526222]}  ali model 3D-neighbors follow..  7  1.....................................................................ADISLSYANFPPAKTFPCVQMEQEVEKRTAGKVQVQTYPGSTNTLRGVMQGQADIGCVSLAYH-YQPKEFKRFKVLTMFASAKVPVRNLDDLKGLEVRASGILS------KILESLGATP--VSMPMSATPEALQKGVVKGLFSSFEVLKDLNFAEICRYETETNTAVYPFAII----MNMNSWNSLPDDVKKVLNDLGREQAEWTGKYMDEHVKRSLAWAKDKY--IKMSDADMQAIKDKTLPLIED.......... 283
70 -10.100d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  17  39......LLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVR................................................................................................................................................................................................................................................................................... 84
71 -10.100d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  7  29.......................................................................................IDLGNDLCKRMNIECKFVEQA---GIIPSLTAGRYDAIMAAMGPMTFLTTADSPLLKTQVAIENAELDKFTKIFEGVKFGVQAGTSHEAFMKQMMPSVQIST---YDTIDNVVMDLKAGRIDASLFLKPLTDKPDNKDLKMFGPRMTGGLFGKGVGVGIRKEDADLKALFDKAIDAAIAD-GTVQKLSQQWFGYDAS........................................... 253
72 -10.000d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  13  38......ILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKER................................................................................................................................................................................................................................................................................... 83
73 -10.000d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  11.YIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ.................................................................................................................................................................................................................................................................................... 60
74 -10.000d2coha4 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  1.RLKNRMAAALLELSETKATHDELAAAVGSVRETVTKVIGELAREGYIRS..................................................................................................................................................................................................................................................................................... 61
75 -9.940d4p56a_ c.94.1.0 (A:) automated matches {Bordetella bronchiseptica [TaxId: 257310]}  ali model 3D-neighbors follow..  8  2........................................................................ELTLSSWLPPTHAVLMPWGEEIRKATDGRVTLRLLPKAAGHFDAVRDGLVDVTFVSHAKYLLKADEHKGVRLLGIAFTTSKPVKQIGDFQGLKIRVGGGMAADVA-------KAVGASPIAKPAPESYELLSTGVADGVFF--PAESLVSFKLDSIIRHATEFPGGLYSDTHAVIINRDAFARLSKQDQDTLVRLSGRHLAELAGRATHDAAARKVLEGGEIELVKADDALIEAVRERTKGFEQA.......... 287
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35