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Query: [S] COG4344 Uncharacterized protein conserved in archaea, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEYEKEIDELINDYDMLRVLKHFTIAHVDYAKNITRYTEIPQMRVREYLKRLKDLGLLDYYTNTSIKRTEAKLKKSAEVHKHHTYYQINKKAEAVLKEITPKLYVHHLKSADLQMLCSRKERKENPEACSSLLRMGLIDKCYDLTDLGREVFDTARRMQILHCEDRNLast
1 -18.100d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}  ali model 3D-neighbors follow..  6  2......TVNDAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN....................................................................................................... 60
2 -17.700d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1...............MKNEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLR....................................................................................................... 50
3 -17.000d4awxb1 a.4.5.62 (B:1-79) automated matches {Klebsiella pneumoniae [TaxId: 573]}  ali model 3D-neighbors follow..  20  1MASLME-------------VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRISETS...................................................................................................... 53
4 -16.700d1sfxa1 a.4.5.50 (A:1-106) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  19  5LGELVKALEKLSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE.......................................................................................................... 66
5 -16.300d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  12  1MEELKEMKSHILGNPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI--------------ADRPRTVVEITDFGMEEAKRFLSS................................................................. 90
6 -16.200d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  10  2............................................................................................NVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQV 77
7 -16.100d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  12  28.KDWQQWLKPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKR--------------LNDKRNTYVQLTEEGTEVFWSL.................................................................... 112
8 -15.800d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  20  19............ITDTDVAVLLKMEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVR........................................................................................................... 68
9 -15.600d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  14  9................KIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITR-----------------TVTKRGQILNITEKGLDVLYTEFAD................................................................. 78
10 -15.500d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  22.PEMLESMEKQGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHN--------------TKDRRVIDLSLTDEGDIKFEEV.................................................................... 106
11 -15.000d3e6ma_ a.4.5.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  17  30.SELNQALASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAAR--------------SISDADQRKRTVVLTRKGKKKLAEISP.................................................................. 116
12 -15.000d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  12  16MSFFRPSLNQHGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKA--------------PKDQRRVYVNLTEKGQQCFVSM.................................................................... 101
13 -14.900d1xnpa_ a.4.5.64 (A:) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  21  1MGEELNRLLDVLGNETRRRILFLLTK-RPYFVSELSRELGVGQKAVLEHLRILEEAGLIES........................................................................................................... 60
14 -14.900d3bjaa1 a.4.5.0 (A:1-138) automated matches {Bacillus cereus [TaxId: 222523]}  ali model 3D-neighbors follow..  15  19.KNLDKAIEQYDISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKN--------------PNDQRETLVYLTKKGEETKKQV.................................................................... 103
15 -14.800d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  17.VEGRKVLRDFGITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPD--------------PADRRAYFLVITRKGEEVIEKVIE.................................................................. 103
16 -14.800d1qbja_ a.4.5.19 (A:) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  6............QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT....................................................................................................... 58
17 -14.600d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  1..........LDMAEIKEKICDYLFNVSDSSALNLAKNIGLKARDINAVLIDMERQGDVYRQGT........................................................................................................ 55
18 -14.400d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  19.SYLPSNEEISDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMD--------------PVDRRTYRVVLTEKGKEIFGEI.................................................................... 103
19 -14.200d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  21.RLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPN--------------PNDKRGVLVKLTTGGAAICEQCHQLVGQDL............................................................ 113
20 -13.900d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  7  2...........LIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGAR......................................................................................................... 53
21 -13.900d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}  ali model 3D-neighbors follow..  12  1.............RSNAEIVCEAIKTIGIETAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPR.................................................................................................... 57
22 -13.800d3cjna_ a.4.5.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 246200]}  ali model 3D-neighbors follow..  14  25.ANLRKEMTALGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRR--------------EVDSDDQRSSRVYLTPAGRAVYDRLWP.................................................................. 111
23 -13.700d4hbla1 a.4.5.0 (A:1-145) automated matches {Staphylococcus epidermidis [TaxId: 176279]}  ali model 3D-neighbors follow..  15  25.QFYEKKLKQFGITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQ--------------QSDKRQLIITLTDNGQQQQEAV.................................................................... 109
24 -13.600d2heoa_ a.4.5.19 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  1.............DNLEQKILQVLSDDGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPK....................................................................................................... 53
25 -13.500d2pn6a1 a.4.5.0 (A:1-60) automated matches {Sulfolobus tokodaii [TaxId: 273063]}  ali model 3D-neighbors follow..  25  1............MDEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIK............................................................................................................ 48
26 -13.500d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  16  1..........MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYT......................................................................................................... 53
27 -13.400d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  12  14.........KVMLEDTRRKILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEK------------YYGRTADV........................................................................... 84
28 -13.400d4gxoa1 a.4.5.0 (A:7-141) automated matches {Staphylococcus aureus [TaxId: 426430]}  ali model 3D-neighbors follow..  12  19.KKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTRE--------------EKDERNLQISLTEQGKAIKSPL.................................................................... 103
29 -13.400d2p5va1 a.4.5.0 (A:3-65) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  16  1.........QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAA........................................................................................................ 55
30 -13.300d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  9  26.......KKHLTLSFVEFTILAIIQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERS--------------TEDERKILIHMDDAQQDHAEQLLA.................................................................. 108
31 -13.300d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}  ali model 3D-neighbors follow..  17  2............IDPAIVEVLLVLREAGPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEA----------------DGRGHASLTQEGAALAAQLFP.................................................................. 81
32 -13.200d5dd8a_ a.4.5.28 (A:) automated matches {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  12  49.REIERTYAASGLNAAGWDLLLTLYRSAPPEPTELSALAAISGPSTSNRIVRLLEKGLIERRED--------------ERDRRSASIRLTPQGRALVTHLLPA................................................................. 139
33 -13.100d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  20.KQYKPLLDKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRS--------------EEDERSVLISLTEDGALLKEKA.................................................................... 104
34 -13.000d2fa5a_ a.4.5.0 (A:) automated matches {Xanthomonas campestris [TaxId: 339]}  ali model 3D-neighbors follow..  13  36............MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRR--------------ETHGDDRRRSMLALSPAGRQVYETVAP.................................................................. 111
35 -12.900d3bpva_ a.4.5.0 (A:) automated matches {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  10  18...IGRELGHLNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIER--------------EQDPENRRRYILEVTRRGEEIIPLILK.................................................................. 102
36 -12.800d2bv6a1 a.4.5.28 (A:6-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  18  23....NKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERS--------------EVDQREVFIHLTDKSETIRPEL.................................................................... 104
37 -12.700d3l7wa_ a.4.5.0 (A:) automated matches {Streptococcus mutans [TaxId: 210007]}  ali model 3D-neighbors follow..  18  1...MYYPVSALLIEYLILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLS-------------TYTQEHQGRRRKYYHLTDSGEKHLVYLTKE................................................................. 87
38 -12.700d2jsca_ a.4.5.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  15  1LARL-----RALADPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG-----------------RQVRYALADS............................................................................ 70
39 -12.700d3mexa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  10  35............LTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERN--------------PSDQRSFQLFLTDEGLAIHQHA.................................................................... 108
40 -12.600d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  12  20TRRLRREAQADPVQFSQLVVLGAIDRLGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHAD--------------PQDGRRTRVSLSSEGRRNLYGNRAK................................................................. 109
41 -12.600d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  16  21...FRDTKKKFNLNYEEIYILNHILESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRS--------------LQDERTVIVYVTDTQKANIQKL.................................................................... 105
42 -12.500d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  14  23...KKKVKPEVDMTIKEFILLTYLQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRS--------------KIDERNTYISISEEQREKIAER.................................................................... 107
43 -12.400d2frha2 a.4.5.28 (A:102-224) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  16  26.......KKEFSISFEEFAVLTYINKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRN--------------EHDERTVLILVNAQQRKKIESLLSR................................................................. 109
44 -12.300d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  7  1..........MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVVFTVPG........................................................................................................ 55
45 -12.300d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  16  16.SISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYR------------QEDASNKKIKRIY--ATEKGKNVYPIIVR.................................................................. 102
46 -12.200d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  10  26.........KAIADENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEG-----------------KLALYSLGDE............................................................................ 91
47 -12.100d5eria1 a.4.5.0 (A:22-168) automated matches {Peptoclostridium difficile [TaxId: 1496]}  ali model 3D-neighbors follow..  12  23...NDIKYKELKLQKGQFTFLTRICENPGINLVELSNMLKVDKATTTKAIQKLIKAGYVDK--------------KQDKFDKRGYNLTPTDKSLEVYELIIE.................................................................. 107
48 -11.900d1y0ua1 a.4.5.5 (A:1-87) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  9  24.........YAVTNPVRRKILRMLDK--GRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGER---------------------WVVTDAGKIV........................................................................ 87
49 -11.700d4aiha_ a.4.5.28 (A:) automated matches {Yersinia pseudotuberculosis [TaxId: 502800]}  ali model 3D-neighbors follow..  9  17.ALIDHRLKPLELTQTHWVTLYNINRLPPQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITR--------------HTSANDRRAKRIKLTEQSSPIIEQV.................................................................... 102
50 -11.600d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  3............LDEFDRKILKTIIEIGPVGLNALAASLGVEADTLSEVYEPLLQAGFLARTPRGRI..................................................................................................... 61
51 -11.600d3jw4a_ a.4.5.0 (A:) automated matches {Clostridium acetobutylicum [TaxId: 1488]}  ali model 3D-neighbors follow..  12  17.TSADARLAELGLNSQQGRMIGYIYENQESIQKDLAQFFGRRGASITSMLQGLEKKGYIER--------------RIPENNARQKNIYVLPKGAALVEEF.................................................................... 103
52 -11.500d5ffxa_ a.4.5.0 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  8  17.QKADQKLEQFDITNEQKHTLGYLYAHQQDTQNDIAKALQRTGPTVSNLLRNLERKKLIYR--------------YVDAQDTRRKNIGLTTSGIKLVEAF.................................................................... 103
53 -11.400d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}  ali model 3D-neighbors follow..  11  16.TRFDIFAKKYDLTGTQMTIIDYLNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYR--------------KVSGKDSRQKCLKLTKKANKLETII.................................................................... 102
54 -11.400d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  2............LNDRQRKVLYYIENKKPVSSQRVLEVIEFSSATIRNDMKKLEYLGYIYQPHTSA...................................................................................................... 62
55 -11.400d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  1....AQSPAGFAEEYIIESIWNNRFPPGTILPAELSELIGVTRTTLREVLQRLARDGWLTIQHGK....................................................................................................... 63
56 -11.300d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  19  1MIIMEEAKKLIILNKSVGAVYAIL-SDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVW......................................................................................................... 75
57 -11.300d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  13  15.AELDRRLSHLGLSQARWLVLLHLARHRSPTQRELAQSVGVEGPTLARLLDGLESQGLVRR--------------LAVAEDRRAKHIVLTPKADVLIADIEA.................................................................. 102
58 -11.200d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  12  26................................ETLMAQFEVSKSTITKSLELLEQKGAIFQVRGS....................................................................................................... 58
59 -11.100d1uj6a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  8  6................................................................................................YKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEE............... 62
60 -11.100d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  17  1.............EYTVEDVLAVIFLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQRGH---------------------FLTLKGKEIRDKLLS.................................................................. 69
61 -11.000d3gw2a_ a.4.5.0 (A:) automated matches {Mycobacterium bovis [TaxId: 233413]}  ali model 3D-neighbors follow..  16  5LLDQVARVGKALANGRRLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGGLVEARREG-----------------TRQYYRIAGE............................................................................ 78
62 -11.000d2lkpa_ a.4.5.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  15  27.........QALATPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAG-----------------RSIVYSLYDT............................................................................ 91
63 -11.000d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  18  1MSKAVVQMAISSLSYSELEAIEHIGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIE............................................................................................................ 65
64 -10.900d1on2a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  8  5............MEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLV.................................................................................................... 60
65 -10.900d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  22  10..................AILEACK--SGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQ---------------------YMLTKKGEELLEDI.................................................................... 68
66 -10.900d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  15  1.........DHIKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHET.......................................................................................................... 53
67 -10.900d5h20a_ a.4.5.0 (A:) automated matches {Bacteroides fragilis [TaxId: 272559]}  ali model 3D-neighbors follow..  17  1.DNVKSQMRKGMLEYCIMLLLHKEPAYASDIIQKLKEALIVVEGTLYPLLTRLKNDDLLSYE-------------VESTQGPPRKYYKLTGKGESFLGELEAS................................................................. 91
68 -10.800d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  5  2.........KTVRQERLKSIVRILERSKPVSGAQLAEELSVSRQVIVQDIAYLRSLGYIVATPRG....................................................................................................... 59
69 -10.800d4hw0a_ a.4.5.0 (A:) automated matches {Sulfolobus solfataricus [TaxId: 273057]}  ali model 3D-neighbors follow..  19  10..................DILRNCE--PKCGITRVIYGAGINYVVAQKYLDQLVKVGALNIKTEN-----------------DRKIYEITEKGKLLRTHI.................................................................... 72
70 -10.800d2dtra1 a.4.5.24 (A:4-64) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae [TaxId: 1717]}  ali model 3D-neighbors follow..  12  5............TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQ.................................................................................................... 60
71 -10.700d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}  ali model 3D-neighbors follow..  21  37................................ADIRAQFGVAAKTVSRALAVLKSEGLVSSRGA........................................................................................................ 68
72 -10.600d4gcva_ a.4.5.0 (A:) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}  ali model 3D-neighbors follow..  14  8.........ERVGEWWSILIMRDA--QGLRRFDEFSRSLDIAPNMLTRRLNALVEAGLLER--------------QPYSQRPLRYQYVPTAKGEDFRVVLMA.................................................................. 85
73 -10.600d4ejoa1 a.4.5.0 (A:1-111) automated matches {Eggerthella lenta [TaxId: 479437]}  ali model 3D-neighbors follow..  18  5.DIVSSMVLELRRGTLVMLVLSQLREYGYALVKSLADHIPIEANTLYPLMRRLESQGLLA-------------SEWDNGGSKPRKYYRTTDEGLRVLREVEAQ................................................................. 96
74 -10.500d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  10  10.................VHILSILNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG........................................................................................................ 58
75 -10.500d3k2za1 a.4.5.0 (A:3-71) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  2............LTERQRKVLLFIEEF-PPSVREIARRFRITPRGALLHLIALEKKGYIERKNGKP...................................................................................................... 60
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;