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Query: [R] COG4588 Accessory colonization factor AcfC, contains ABC-type periplasmic domain, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKKYGWRELast
1 -64.300d4kd5a_ c.94.1.0 (A:) automated matches {Clostridium difficile [TaxId: 272563]}  ali model 3D-neighbors follow..  16  1..................SVELNISAAASLKEAMAKIEEEYKKVSNVKLTVNYGASGSLQQQIEQGAPDLFISAGQKQMKVLDEEK-LLVSDTMKDLVKNDLVLISSADSS--VSGMKDLTTDKVKKI---AVGEAESVPAGKYADEVLT--NLNLKDKLKDKLV-FAKDVKEVLAWVQSGNADVGFVYFSDTVNNDKIKVVEKTDEHSPITYPVSVIKASKNVDAAKKFEEFLLSESGQKIFEEFGYK. 226
2 -63.300d3r26a_ c.94.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  16  1...................GKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPDLFISADQKWMDYAVDKK-AIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTN-SLLNGGRLAVGDPEHVPAGIYAKEALQ--KLGAWDTLSPKLA-PAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEHKKVEYPVAVVEGHNNAT-VKAFYDYLKGPQAAEIFKRYGFT. 229
3 -57.000d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  12  1....................ELKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPNVFFSADEKSPEKLDNQG-FALPGSRFTYAIGKLVLWSAKPGLVD-NQGKVLAGNGWRHI---AISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIV-EANSVGQAHSQTASGAADLGFVALAQIIQAAAKIPFPPANYYEPIVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYV. 228
4 -53.100d5um2a1 c.94.1.1 (A:51-364) automated matches {Xanthomonas axonopodis [TaxId: 190486]}  ali model 3D-neighbors follow..  15  1.................REIGLLNVSYDPTREFYRDYNAAFAAQDTVTVETSHGGSGKQARAVIDGIEDVVTLALAYDVDAIAQKAKLIETDDNSAPYTSTIVFLVRKGNPKNIHDWPDLLRSGVAVV----TPNPKTSGGARWNYLAAWAYADRYMQALFRNVVLDTGARGATTTFVQRGIGDVLLAWENEALLAREELGKDKFEAEPSVALVDKNVDKHGTREVAEAYLRYLYAPEGQKLAAKHFYR. 263
5 -50.600d2onsa2 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  11  1..................NVKLKVFHAGSLTEPMKAFKRAFEEKPNVEVQTEAAGSAATIRKVTELGRDVIATADYTLIQKMMYPEFA---NWTIMFAKNQIVLAYRNDSRYADE-YEILKRPDVRF----GFSNPNDDPCGYRSLMAIQLAELTIFDELVAKNIMIRSMEMELIHLVESGELDYFFIYKSVAKQHGFNFVELPVETGKPIVYGITIPKNAENRELAVEFVKLVISEEGQEILRELGQE. 290
6 -29.700d4eloa_ c.94.1.0 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  16  1....................TLTIYSGRG-QSLVEPLVKQFEAETGIRVQVRYSTDAQILAALQEEGSDLFWANTAGALGQASAKGLLRPLGETLPVTVRLRVLAY---NPDRIESLLDLPRFAREKGLVGRVGWTPTYSVAGMIALYGEEKTREWLLAMKALAPKAYPSNPAMLDAIRAGEVDLGSTNHYYVVRFRRAGYRLGMAGNLALVTGAGLLKTSKNLAAATRFLTYLLSPQAQQYFVGNIGE. 262
7 -28.600d3e13x_ c.94.1.1 (X:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  16  1...................SELNIYSARH-YNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSDIFITADISNLTEAKNLGLLSPVSSKYAITKRARIIAYNKNTNIDIKNYEDLAKAEFKIVMRSATAPYSKTLLASIIANDGNKEAKAWAKGVLENLATNPKG-RDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGIGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSNYE. 271
8 -28.100d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  18  1....................DITVYNGQQ-KEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDDVFYTEQTATFADLSEAGLLAPISEQTILSGRSRVVVY---DHTKLKSVLDYATPKWKIGYVSTSGAFLEQ-VVALSKMKGDKVALNWLKGLKENGKLYAKN-SVALQAVENGEVPAALINNYYWYNLAKEFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLASKKGQEALVAARAE. 264
9 -27.100d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]}  ali model 3D-neighbors follow..  15  1................SNDSGIVVYNAQH-ENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSDVFLTENSPAMVLVDNAKLFAPLDAVTQIAARSTVFVY---NPEKIKSIMDLAKPEWK-WAASPSGADFQAIVSAMLELKGEKATLEWLKAMKTNFTAYKGN-STVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHSISGGGVLASSKHPKEAQEFVKWITGKSGQDILRTNNAFE 267
10 -26.800d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]}  ali model 3D-neighbors follow..  15  1..................ANEVNVYSYRQ-PYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELDVLLTVDISRVMEIVNADLAQKIDSKVGLTTRARVIYTSKDRVGKLFDYLDLAKPEYKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHE. 268
11 -25.100d2voza_ c.94.1.0 (A:) automated matches {Synechocystis sp. [TaxId: 1148]}  ali model 3D-neighbors follow..  15  1...................RTINLYSSRH-YNTDDALYDAFGEVNLIE-----ASAEELIERIQSEGADILFTVDAGMLWRAEQAGLFQPVRSGKGFTQRARVLYYSRDNPADLSTYEALADPQWRILVRPSSNVYNLSLTASRIAIHGEPETRRWLQGLVGNFARQPGNDTAQIRAIAAGIGDVAIAYYYIRLQKSTDPADQEVVEKVSLFFPAGVLKNAPNRDAAIAFLEYLASDDAQRYFAEGNNE. 267
12 -24.800d4edpa_ c.94.1.0 (A:) automated matches {Clostridium perfringens [TaxId: 195103]}  ali model 3D-neighbors follow..  17  1....................KLVVSTWGLNEDVLKEVFEPFAKEHGVEIVLDIGNNSERLTKMKNNPDITYLAESFAEQGVEAGIFDKLDYSKIPAYTLNSIGIVVDPSAGIEINSWEDLWKPELKIAIPDITTTNGPAMVGVDVKTDNGEAAFKELEALKPNVVKTYSKSSDLANMFSNGEIVAAVASDFAFKAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQEKTAK..... 262
13 -21.400d4n13a_ c.94.1.0 (A:) automated matches {Borrelia burgdorferi [TaxId: 224326]}  ali model 3D-neighbors follow..  11  1..................EKIVSIGGSTTVSPILDEMILRYDKINNTKVTYDAQGSSVGINGLFNKIYKIAISSRDLTKEEIEQG-------KETVFAYDALIFITSPEIKIEIQNWKQVGGPDAKINFINR--DSSSGSYSSIKDLLLNKIFKTHEEAQFRQDGIVVKSNGEVIEKTSLTPHSIGYIGLGYAKNSIEKLNILSVNSTYPTKETINVTNNKYEDKSVTQFIDFMTSSTGQDIVEEQGF.. 250
14 -20.800d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  15  1...................SEITISGSTSVARIMDVLAEKYNQQPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQNT-------HTFTLAFDGLAIVVNQANPVQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSN-SMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGY.. 246
15 -20.000d4exla_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  10  1..................GESITAVGSTALQPLVEVAADEFGTIVGKTVNVQGGGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVD----HKVAVAGLALIVNKEVD-----VDNLTTEQLRQIFIGEVTNWKEVG-----SVINRAAGSGSRATFDTVIMQEQDSNGAVKSIVSKSPGAISYLSLTYIDDSVKSMKLNGYDLNWPLWSYEHMYTLGQPNELAAEFLNFVLSDETQEIVKGLKY.. 240
16 -19.600d3pu5a1 c.94.1.0 (A:31-351) automated matches {Bordetella parapertussis [TaxId: 519]}  ali model 3D-neighbors follow..  14  1.................ADDHIYVTSGGSFLENVRKMAEPFEKQSGVKVTLVPGTNPAHALKILSSRDVAAFGGNDMYRLIRAKKLAQVDEKSVSLYDYSSVGIAYRPDKQGGVKSWKEFVERTVEFGKQVFFNNLSSNVRGAEVLSMFGKASIATLERMKPHIFKFFTAFNDPVVLLTSGEGAIGPGWDGRTFIAEDSVKWVDPTEGAVSSGPVMAVVKGGKEDLAKAFMNYALGEEAQKAFCE..... 270
17 -18.700d4i1da1 c.94.1.0 (A:44-363) automated matches {Bradyrhizobium japonicum [TaxId: 224911]}  ali model 3D-neighbors follow..  11  1....................QITFVSQGGAYQAAVAILDPSAKKLGITINQD-DAWPAIKTQVGSGKQGLIEKLDFSKIPNAAAMPEAYRSPYSVSYEFYSSVLAFPKDAPNSWVDFWDVKKFPGRRALRNHPIATLEAALGVAPDKLYPLRAFKKLEEIKPHITVWWTSGAQSAQLLNDGEVDMEMAWNGRVSAVAKEGAKVSFTYNQGILQSLCILKGAPNLETAVKFLNEAVDPVHQANLPLH.... 261
18 -17.600d5l9sa_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  14  2..................EQRVVIATGGTYEKALREWFEPFTKATGIKVVTVSGTDAKVTAMVQTGNDLYLDGEIQAGSDAHFAITEDLSDFCMQFLAYKLNEN---GSNPQTWADMWDLAKFPGARSFPNFDDPWRVLAAALLADGVPREKAFRKLDELRDSVQVWWRTGDQSVQAFRNDEYRVGQIWLTRAKALKAEGYKIGWSYDGAFLVRIALVRGAPNRENALKLIEFLRNPAAQAKACET.... 270
19 -17.500d4euoa_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  16  1....................DLVFSSWGGTTQDAAAWAEKFMVETGINVLQGPTDYGKLKAMVEANGDVVDVEGDYAAQAGPKGLLEKLDFSVIDKIGCNVDSV---SACPKSWADLFDTAKPGKRTFYKWSAPGVIEAALGVTADKLYPLRAFKKLDTIKSDIIWWSGG-AQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSWAQNITASLVVPKGTKNKDAAMKFIALATSAQAQADMATA.... 258
20 -16.600d4jdfa_ c.94.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  10  1..................QKTLHIYNWTEYIAP--DTVANFEKETGIKVVYDFDSNEVLEGKLMAGSTGFLVVPSAYFLERQLTAGVFQPLDKSK-IGYNVDKVKAVLGENAPVDSWDLILKPENLVSFLDDPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRQYINDLANGDICVAIGWAGSVWQASNRAKEAKNGVNVSFSIPFAMPADAKNKDEAYQFLNYLLRPDVVAHISDH.... 283
21 -15.900d4eqba_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 525381]}  ali model 3D-neighbors follow..  13  1..................SQKLVIYNWGDYIDP--ELLTQFTEETGIQVQYEFDSNEAMYTKIKQGGTTYIAIPSEYMINKMKDEDLLVPLDYSKPYFWGTLGIVYNETMDEAPEHWDDLWKLEYKNSIMLFDGAREVLGLGLSLGYSLNSKDPQQLEETVDKLYKLTPNIKEMKGYMIQNNVAIGVTFSGEASKNENLRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFMLKPENALQNAEY.... 263
22 -15.800d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1..................NNTLYFYNWTEYVPP--GLLEQFTKETGIKVIYSYESNETMYAKLKTYKDGAYVVPSTYYVDKMRKEGMIQKIDKSKPYIWGATAIGVNGDDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALKLGYSGNTTDPKEIEAAYNELKKLMPNVANPANPYMEGEVNLGMIWNGSAFAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAET.... 265
23 -15.500d2v84a_ c.94.1.0 (A:) automated matches {Treponema pallidum [TaxId: 243276]}  ali model 3D-neighbors follow..  14  1...................DVLYLYNWTYYTPT--SLIKKFEQQYNVQVVYDYASNEDMFAKLSIGASGYLVVPSGDFVSIMKRKHLLEKIDLSKPYYLGAAGIAVNKKAPSYARTWSIFSRKDLAYRMSMMDDMREVMGAALANEQELAQAAILVTDHWKPNLVKFDSD--GYAKSFASGDFVVAHGFAEAFFAHEHIDFFIPQDVASPVYVDFCIPKGARNRDLAHAFINFFLEPAHYAEFLDT.... 267
24 -15.200d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  14  40...................................DVMQELAKDMGVKITFVPTEWKTIVSGITAGRYDISTS-----VTKTPKRAEVAGFTD--SYYKYGTVPLVLKKNLKKYSTWKSLNNKDVTIATTLGTSQEEKAK-----------------EFFPLSKLQSVESPARDFQEVLAGRADGNITSSTEANKVVKYPQLAIVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNK..... 226
25 -14.400d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  14  30...................................DLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISG----MTISQERNLRVNFVE--PYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAK-----------------RLFKNAKLKTYDTEAEAVQEVLNGKADMFIF-FNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDE..... 218
26 -14.100d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  8  1..............TNDTSGVLTIATTHTQAR-LPEVIKAFRELPEVRLELIQGTPQEIATLLQNGEADIGIASERLSND------------VAFPWFRWHHSLLVPHDHPISPLTLESIAKWPL-------ITYRQGITGRSRIDDAFARKG------LLADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLRNYVWRFLELCNAGLSVEDIKR..... 215
27 -14.000d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  12  37...................................DLAKEIARRLGVELKIVDMTFDGLIPSLLTKKIDVIISG----MTITEERKKVVAFSD--PYFDAGQVIVVRKDSDFRPKTYEDLVGKTVAVQIG--------------------TTGDIEVSKYDGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPDLVISSGVLSSEQYGIAVRKEDTDLLEFILRELKKSPYDVLIEKW.... 224
28 -13.900d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  11  39...................................DMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAY-------SIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFA------------------ANLKKARILVHPDNVTIFQQIVDGKADLMMT-RLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQS--RQRMEHW.... 231
29 -13.700d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}  ali model 3D-neighbors follow..  10  1..............TWPDKGSLYVATTHTQAR-LPGVIKGFIERPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLY------------VMLPCYHWNRSIVVTPEHPKGSVSIEELAQYPL-------VTYTFGFTGRSELDTAFNRAG------LTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDPVSDPDLVKLDAN-GIFSHSTTKIGFRRSTRSYMYDFIQRFAPHLTRDVVDT..... 215
30 -13.500d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  8  33...................................ELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSG----ISITDKRKKVIDFSE--PYYINSFYLVSMANHKITLNNLNELNKYSI------------GYPRGMAYSDLIKNDLEPKGYYSLSKVKLY-PTYNETMADLKNGNLDLAFI-YFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKEQGPQKISGIVDSW-MK. 229
31 -13.200d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  14  39...................................ELAKAIATELGVELELSPMSFDNVLASVQSGKADLAISG----VSKTDERSKVFDFST--PYYTAKNKLIVKKSDLATYQSVNDLAQKKV------------GAQKGSIQETMAK-------DLLQNSSLVSLPKNGNLITDLKSGQVDAVIF-AKGFVENNPDLAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDK..... 226
32 -12.900d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  41...................................EVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFA-------STPYKYSYGTAIVRKDDLSGIKTLKDLK------------GKKAAGAATTVYMEVARKYG-------AKEVIYDNATNEQYLKDVANGRTDVILN-QTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTK..... 228
33 -12.700d2xd3a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 170187]}  ali model 3D-neighbors follow..  14  1....................ELTVYVDEGYKSYIEEVAKAYEKEAGVKVTLKTGDALGGLDKLSLDVPDVMMAPYDRVGSLGSDGQLSEVKLSDGPAVIESLVMYYNKD-KDAPKTFADLENLAKDSVFGQNGKDAKDIGLANDGSIVGINYAKSWYEKWPKGMQDTEGAGNLIQTQFQEGKTAAII-WKAQAFKDAKVVATIPTLPNGKEYAAWVIPQAVKNLEASQKFVDFLVATEQQKVLYDKT... 299
34 -12.700d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  17  39...................................DVAREIFKRLGVAVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVA-------SQPILCDAEAFALKKGNPLGLKSYKDIADNP---------DAKIGAPGGGTEEKLALEAG------VPRDRVIVVPDGQSGLKMLQDGRIDVYSSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELASGEFAKIIEPYGFSA 241
35 -12.500d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}  ali model 3D-neighbors follow..  10  2...................GELSVYFGTPIYRSLPLLLRAFLTSPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGI----------EIVNIAQEDLYLAVHRSQSGKFGKLADLRAVELTLFPRGGRPSFADEVIGLFKH-----------AGIEPRIARVVEDATAALALTMAG-AASSIVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQPPILARFVEHVRRSAKD.......... 205
36 -12.000d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  13  28...................................DVWRAVAESQKWNSEVRQNSISAGITAVAEGELDILIGP----ISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVV------------RDTTAVDWANFYQAD---------VRETNNLTAAITLLQKKQVEAVMALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVAEFTERW.... 219
37 -11.900d1ixha_ c.94.1.1 (A:) Phosphate-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  1..................EASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLF-----QFPTVIGGVVLAVNIPGLKKIKKWDDLPSQNIAVVRRDGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEENFANAEQGTEVLKFFDWAYK-TGAKQANDLDY.. 293
38 -11.800d2gh9a_ c.94.1.0 (A:) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  15  1....................KITVWTGGPELEWLKEQARTFERTSGTKVEVVEVPFAEIKQKFILGAADLVVTVPHDWVGEMAQAGVLEPVGKYLPAFAESVALIYNKK-PRTWEEFLALAQKAENVFAKDAKGNLDPTKLLIGGEVGEKALQFIKDLRFKYNLVPEGVDYGVADGAFKDGALAMILN--GDYKKAKVDFGIAPFPVPPGAKNPVVVNAYSKNKTQAVNFAKTLVTGRNLVAFNQ..... 300
39 -11.800d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  14  41...................................DLATAVFEKYGITVNWQPIDWDLKEAELTKGTIDLIWNG----YSATDERREKVAFSN--SYMKNEQVLVTKKSS--GITTAKDMT------------GKTLGAQAGSSGYADFEANPEILKNIVANKEANQYQTFNEALIDLKNDRIDGLLI-ANYYLEAEGVLNDYNVFTVGLETEAFAVGSRKEDTTLVKKINEAFSSLYKDGKFQE..... 233
40 -11.800d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  12  33...................................ELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDVLQG-----ISWSEKRARQIDFTP--PHTIVYHAIFARRDSP-PAAGLEDLRGRKVALHRDGIMHE--------------------LAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEA..... 217
41 -11.400d4hw8a_ c.94.1.0 (A:) automated matches {Staphylococcus aureus [TaxId: 93061]}  ali model 3D-neighbors follow..  10  1...............KDKPNQLTMWVDGD-MAFYKKITDQYTKKTGIKVKLVNIGQNDQLENISLDGPDIFFLAHDNTGSAYLQGLAAEIKLSKDPAIVETTALFYNKK-KNAPQTLEEVEANAAKLIFKKNGSEYDIHQLGLNSKHVVKNAER-LQKWYDKGYLPKAATHDVMIGLFKEGKVGQFVNINEYQETFGKDLGVTTLPTDGG--RGWYLSEYSKHKYWAKDLMLYITSKDTLQKYTD..... 299
42 -11.000d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  15  28...................................DLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDVALSG----MTIKEERRKAIDFSD--PYYDSGLAAMVQANNT-TIKSIDDLN------------GKVIAAKTGTATIDWIK-------AHLKPKEIRQFPNIDQAYLALEAGRVDAAMNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADRYAKIYKKW.... 217
43 -10.900d2zyoa_ c.94.1.0 (A:) automated matches {Thermoactinomyces vulgaris [TaxId: 2026]}  ali model 3D-neighbors follow..  14  1.............KSEGKPDKLVVWEDGVQLNNTKKWAGEFTKKTGIQVEVVPVALLKQQEKLTLDGADLVTWPHDRLGEAVTKGLLQPIQVDNSPKAIESVALIYNKK-GQVPATYDELFQYAKANVFKEQDGTLDPNEIGLNSPEAVQGMNE-VQKWFTEARLPQSLKADTVNGLFKSGKVAAVIN--KDYQAAGINVGVAPLPKIDG--KGWYLSAYSKYPKYATELMQFLTSKEALASRFK..... 302
44 -10.700d4wepa_ c.94.1.0 (A:) automated matches {Escherichia coli [TaxId: 511145]}  ali model 3D-neighbors follow..  11  1..................ASPVKVGSKIDTEGLLGNIILQVLESHGVPTVVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYANNTWTIAVRQDEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGVQPIYAPAPVVRESVLREYPQMAQWLQKKVAADYLKQKGW.. 280
45 -10.700d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  15  34...................................DLLNAIAKNQGFKLKWNFIGFQAAVDSVQSGHADGMMSG----MSITDARKQVFDYGS--PYYSSNLTIATSSTD-DSIKSWKDLK------------GKTLGAKNGTASFDYLNAHAKEYGYTVKT------TDATTMYSSLNNGSINALMDDEPVIKYAIKQGQKFATPIKPIPDGQYGFVKKGSNPELIEMFNNGLANLRANGEYDK..... 220
46 -10.700d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  10  10................VDINNVVCAMPLPYTRLYEGLASGKAQFDGIPFYYAMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQLICRKG--------ESGNVKRV------------GLDSRSADQKIMTDVFFG-----DSDVERVDLSYHESLQRIVKGDVDAVIWNVENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVDKH............ 210
47 -10.500d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  16  42...................................EVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQ------GLTSPERQATFDKSEPYSWSGAVLVAHNDS--NIKSIADIK------------GVKTAQSLTSNYGEKAKAAGAQ---------LVPVDGLAQSLTLIEQKRADATLAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKK..... 227
48 -10.400d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]}  ali model 3D-neighbors follow..  10  1...................QTITVWSTGPELQDVKQIAAQWAKAHDKVIVVDQSSNPKGFQFYATAGPDVVFGMPHDNNGVFAEEGLMAPVPSGVPVSVQVAAIYYNKK-PQPPQTWAEFVKDANAHVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVS--ADIEKAKIDFGVTPWPTLPN--ITAFVNKESKTQAADWSLVQALTSAQAQQMYFRDS... 293
49 -10.400d2ghaa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  13  2..................QPKLTIWCSEKQVDILQKLGEEFKAKYGVEVEVQYVNFQDIKSKFLTAGADIIVGAHDWVGELAVNGLIEPIPNFSDPYAMEAIALIYNKD-PEPPKTMDELIEIAKQIVFKQTEKGLDVNDIGLANEGAIKGVKL-LKRLVDEGILDPSDNYQIMDSMFREGQAAMIIN--KAYKDAGIDYGVAPIPDLEP--QGFMVNAKSPNKLLAIEFLSFIAKKETMYRIYL..... 297
50 -10.100d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  14  30...................................ELVKEIDKRPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFL-------NDVAYNNFPLQLTVLDSNNSINSTKDLA------------GKRVITSATSNGALVLKKINEEQGNNFE--IAYEGQGSNDTANQLKTGRADATIS-FAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKK..... 221
51 -9.980d4gota_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  14  1................SGKKEIVVAATKTPHAEILKEAEPLLKEKGYTLKVVLSDYKMYNKALADKEVDANYFQHIPYLEQEMKENTDYKLVNAGAVHLEPFGIYSKT-----YKSLKDLPDGATIILTNNVAEQGRMLAMLENAGLITLDSKVETVDATLKDIKKNPKNLELTAKAYENKEGDAVFINVNYAIQNKKDAIEVESTKNNPYANIIAVRKGEEDSAKIKALMEVLHSKKIKDFIEK..... 236
52 -9.800d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  15  26...................................DLWRSIATQIGIESKIEYSSVPELISAIKDNKVNLGIAA----ISITAEREQNFDFSL--PIFASGLQIMVRNLESGDIRSIDDLP------------GKVVATTAGSTAATYLREHHIS---------VLEVPKIEEAYKALQTKKADAVVVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENTYQSLYDKW.... 217
53 -9.670d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  10  28...................................EVAKEVFKASDYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYL-------SNPTASNPLVLVVPKDS--DIKSYNDIA------------GHSTQVVQGNTTVPMLQKFNKNHENNQVKLNFTS-EDLAHQIRNVSDGKYDFKIISAETIIKEQGLDNLKVIDLPSDQKPYVYFIFAQDQKDLQKFVNKRLKKLYENGTLEK..... 220
54 -9.530d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  9  29...................................DLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITG----MSITPSRLKEILMIP--YYGEEIKHLVLVFKG-ENKHPLPLTQYRSVAVQTG--------------------TYQEAYLQSLSEVHIRSFDSTLEVLMEVMHGKSPVAVIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAE..... 215
55 -9.330d5ci5a_ c.94.1.0 (A:) automated matches {Pseudothermotoga lettingae [TaxId: 416591]}  ali model 3D-neighbors follow..  12  1..................SKTLTIWQVAELDETWNSVIKTFEEKYGISVEVQLFGFDTYYDKLVTAGPDLAFADLGGWVPTFAEKGWLEPMEEHLPWYTDCRLLLYNKA-DNPPKTWDELLDAALKITDTKNRIYGYGVSGTKTEHTTLGAAGGKLLTDDYSKAAFDSPEGLKALKFMAQNRVAMAILIEAANPDIAGKYSVALHPYDAK--WALVIPSSSPNKEDAWKLAEYLTSFDVWMKWVE..... 312
56 -9.310d4r6ha_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  12  1..............ADTAKKTLTIYSTDSERDTFRKLAAAFEKESDIHVSLHFPGNDMMRVRMAANLPDLFDTRDMKWTQDLDPNLNSILKNAKDGLAYNRNIIAPPETMDDFIKALRTIKEKSKGSIVPFWFAGYDKSSFAQYYDQFATPL-SEILKQMQKE--AVTAKKSQLIELMAQNKIAFTMGQDVAQINPNVKVGIIPTPAIHPERYTLAAWKDSPQLKEAKDFIAFMARPANAKQMAE..... 314
57 -9.290d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  17  31...................................DLMQEICRRLHATCTFEAYIFDDLFPALKNREVDLVIAS----MIITDERKKHFIFSL--PYMESNSQYITTVDS--KISTFDDLHGKKIGV-------------------RKGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLR..... 222
58 -9.180d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  14  41...................................DLIEYLRDKMGFVADVQLAPPNTLVLALANGDYDIAIGD----ITVTSARREIVAFSN--SISDNSMRILMRKGTL--IDGMDDLKNGKIP-------YNRIGIRIGTAGEDYYLREISGGSRNFYP------KSRQEMYDSLLAGIIDVSFM-AEYVTNNIYCNLTLVGEDFDKSTFGIVTPKEWLYAKDLDVNILSLRETGILDNLKKKWFQT 242
59 -9.170d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  13  39...................................DVAKLLAKSDDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYN-------SEPYYQDAIGLLVLKEK--KYKSLADMKGANI------------GVAQAATTKKAIGEAAKKIGIDVK---FSEFPDYPSIKAALDAKRVDAFSV--DKSILLGYVDDKSEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNDALAKKW.... 229
60 -9.150d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  16  40...................................DIAKAITKKDNGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQ------VDFSDVYFDAGQALLVKKGS--QIKSVDDLNASTT------------LAVKGSTSAANIR-------QHAPDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPEYELVGGTFTNEPYGIAINKGQENFLKAVNQALEEMHADGTYDK..... 226
61 -9.100d4ovja_ c.94.1.0 (A:) automated matches {Alicyclobacillus acidocaldarius [TaxId: 521098]}  ali model 3D-neighbors follow..  9  2...............SKPVVTLTFWGDAKEEAVTLAAVKAFEKAPNIHIQTEFGGPTKLSTEVAGGNAPDIMQMDYEYIDAYAKEGQLLNLKGAKGIALNNYAVIYDEAAKAGYHSWQQWADILEKVHKATGKWAENDDESWQTFGYWARQHGQHLYNASGTKLGFTESTLVSYLNYMVQGKSDAELTWVSLQSEMTRSLALALPPTQPG--QFWSIYSKTKYPQQAELFVNFLLNNVQAGKALGLV... 311
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.