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Query: [M] COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQNLast
1 -37.300d1qsaa2 d.2.1.6 (A:451-618) 70 kDa soluble lytic transglycosylase, SLT70 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  10.........................................................................................................................................................................................................................................................YTSGKEIPQSYAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTV-GQLLDPETNINIGTSYLQYVYQQF------GNNRIFSSAAYNAGPGRVRTWLG-NSAGRIDAVAFVESIPF--------------------SETRGYVKNVLAYDAYYRYFMGDKPTLMSATE.................................................... 163
2 -36.000d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  15  14..NSFAPFEFQNDDKQFTGIDVDLLNAIAKNQGFKLKWNFI-GFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTDDSIKSWKDLKGKTLGAKNGTASFDYLNAHAKEYGYTVKTFT----DATTMYSSLNNGSINALMDDEPVIKYAIKQGQKFATPIKPIPDGQYGFAVKKGSNPELIEMFNNGLANLRANGEYDKIIDKYLES.......................................................................................................................................................................................................................................................... 228
3 -35.000d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  13  4VATRVIPPFVLSNKGELSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESDIRSIDDLPGKVVATTAGSTAATYLREHHIS--------VLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFD........................................................................................................................................................................................................................................................... 219
4 -33.900d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  15  2ELVVGTDTSFFKQGDKYVGFDLDLWAEIAKGAGWTYKIQPM-DFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKPK------EIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGS.......................................................................................................................................................................................................................................................... 220
5 -32.700d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  19  11....YPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREF-SFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSLSE-------VHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGASDRPALALKIEAAVQEIRKEGVLAELEQKWGLN.......................................................................................................................................................................................................................................................... 223
6 -32.600d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  20  5LATVGTTNPFYEKKGKLTGYDIEVAKEVFKASDKYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVVPKDSD-IKSYNDIAGHSTQVVQGNTTVPMLQKFNKNHENNQVKLNFTSEDLAHQIRNVSDGKYDFKIFEKISAEIKEQGLDNLKVIDLPSDQKPYVYFIFAQDQKDLQKFVNKRLKKLYENGTLEKLSKKYLG........................................................................................................................................................................................................................................................... 227
7 -32.600d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  20  16TMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKKE-FTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAG--ITDAAGLKGKRLGVVQGTLQEIYAEKNFAGT------DLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFP........................................................................................................................................................................................................................................................... 230
8 -32.600d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  14  19.............NAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAEGITFTQPYFSSGIGLLIPGTATLFRSVGDLKNKEVAVVRDTTAVDWANFYQADVRET---------NLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLG........................................................................................................................................................................................................................................................... 221
9 -32.000d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  19  15....YPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLG-AWSEMFSALKSGRVDVLQ-GISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVALHRDGIMHEYLAERGYGK------DLVLTPTPADALRLLAAGGCDYAVVAMVPGMIRENRLTNLVPVARSIAAQRYGYAV-RQGDAELLARFSEGLAILRKTGQYEAIRAKWLG........................................................................................................................................................................................................................................................... 224
10 -31.900d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  16  6KVVVGTDAAFYMQKGKIVGFDVDLLDAVMKAAGLDYELKNI-GWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP-VKNALDLKGKTIGVQNATTGQEAAEKLFGKGPHIKKFE-----TTVVAIMELLNGGVDAVITDNAVANEYVKNNPNLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGK.......................................................................................................................................................................................................................................................... 226
11 -31.400d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  21  19....FPPFEFVDENGNIVGFDVDLAKEIARRLGVELKIVDM-TFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDRPKTYEDLVGKTVAVQIGTTGDIEVSKYDG-------IKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPDLVISSGVLSSEQYGIAV-RKEDTDLLEFINSVLREL-KKSPYDVLIEKWFS........................................................................................................................................................................................................................................................... 226
12 -31.300d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  17  15....SPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEY-AWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKTLNNLNELNKYSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKN--KKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMK........................................................................................................................................................................................................................................................... 229
13 -31.200d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  16  32.............SDKLTGYEVEVVREAAKRLGLKVEFKEM-GIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDSGIKTLKDLKGKKAAGAATTVYMEVARKYGAKE------VIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNK.......................................................................................................................................................................................................................................................... 236
14 -31.100d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  19  23....FVPMGFAQKDGSYAGFDIDLATAVFEKYGITVNWQPI-DWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVTKKSSG-ITTAKDMTGKTLGAQAGSSGYADFEANPEILKNIVANKEANQYQTNEALIDLKNDRIDGLLIDRVYANYYLEAEGVYNVFTVGLETEAFAVGS-RKEDTTLVKKINEAFSSLYKDGKFQEISQKWFG........................................................................................................................................................................................................................................................... 240
15 -31.100d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  17  21............NNSSLYGFDIDLMQEICRRLHATCTFEAY-IFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK-ISTFDDLHGKKIGVRKGTPYARQVLSENRNN------QVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYIGKKISIGEGYSIMA-NPDQFVLIKKINKILLEMEADGTYLRLYSEYF............................................................................................................................................................................................................................................................ 228
16 -31.000d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  19  21....YKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPT-SWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEARFQTLEQIPGVTAIVNPGGTNEKFARANLKKA------RILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWL............................................................................................................................................................................................................................................................ 232
17 -31.000d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  15  16....YAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFT-NQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA-YHTFADLKGKKVGLENGTTHQRYLQDKQQA------ITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYY-IAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT........................................................................................................................................................................................................................................................... 228
18 -30.900d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  19  14....YAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWV-ASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVVAYA----NQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAPSVKDKKYFGDGTGVGL-RKDDTELKAAFDKALTELRQDGTYDKMAKKYFD........................................................................................................................................................................................................................................................... 232
19 -30.700d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  22  22....FPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQ-SFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGG--PRTAKDLQGKVVGVQVGTTYMEAAQKIPGIK------EVRTYQRDPDALQDLLAGRIDTWITDRFVAKIKERKLENTLQVGELVFQERVAMAV-AKGNKSLLDALNRALAELMQDGTYARISQKWFG........................................................................................................................................................................................................................................................... 230
20 -30.700d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  20  12....FPNVCFLDENGKLTGYDVELVKEIDKRLGYKFKFKTM-DFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQ-GSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLG........................................................................................................................................................................................................................................................... 228
21 -30.400d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  21  12....YLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPT-SWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEGVKSYKDLDKPELVTKFGVSAEYAAKRLFKNA------KLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVD.......................................................................................................................................................................................................................................................... 226
22 -30.300d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  14  17VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELENKVQFVLV-EAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN-ITSVEDLKDKTLLLNKGTTADAYFTQNYPN------IKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLK........................................................................................................................................................................................................................................................... 232
23 -30.100d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  19  30.............KNQIVGSDIELAKAIATELGVELELSPM-SFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLTYQSVNDLAQKKVGAQKGSIQETMAKDLLQNS------SLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDADLNFEKEQDDSYAVAM-KKDSKELKEAVDKTIQKLKESGELDKLIEDAFK........................................................................................................................................................................................................................................................... 233
24 -29.900d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  20  24....YAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKET-QWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVAHNDSN-IKSIADIKGVKTAQSLTSNYGEKAKAAGAQLVPV---------GLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFG........................................................................................................................................................................................................................................................... 234
25 -29.300d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  15  18.IANEPPFTAVGADGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPSYKDIADNPDAKIGAPGGGTEEKLALEAGVPRDRVIVVP-----DGQSGLKMLQDGRIDVYSLPVLSINVSKANDPNVEVLAPVEGAPVYCDGAARKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSAKAAMSTTREKL.............................................................................................................................................................................................................................................. 252
26 -29.200d4g9sa1 d.2.1.5 (A:7-185) automated matches {Atlantic salmon (Salmo salar) [TaxId: 8030]}  ali model 3D-neighbors follow..  16  28......................................................................................................................................................................................................................................SHKLAEHDLVRMNKYKELITRVGQKLDPAIIAGIISRESRAGSALDHGWGDHGKFGLMQVDKRYHKIVGAWDSEKHISQGTEILIEFIRRIQAKFPKEHQLKGGISAYNAGDKNVRTYERMDV----------------------------------GTTGGDYSNDVVARSQWFKS................................................................. 176
27 -28.600d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  16  31.............TNKYKGFDIDVMQELAKDMGVKITFV-PTEWKTIVSGITAGRYDIST-SVTKTPKRAEVAGFTDSYYKYGTPLVLKKNLKKYSTWKSLNNKDVTITLGTSQEEKAKEFFPLS------KLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLAIVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYN............................................................................................................................................................................................................................................................ 232
28 -28.000d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  13  31............NTTKLTGYVLDLIEYLRDKMGFVADVQLATSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTL-IDGMDDLKYNRIGIRIGTAGEDYYLREISGGSRNFYPLK----SRQEMYDSLLAGIIDVSFMDIGTAEYVTN--IYCNLTLVGEDFDKSTFGIVTPKEWLYAKDLDVNILSLRETGILDNLKKKWFQT.......................................................................................................................................................................................................................................................... 242
29 -28.000d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  17  10....YPPYNFINDAGEVDGFERELGDELCKRAGLTCEWV-KNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATS-----DGADLSGI-VAAQTATIQAGYIAESGAT--------LVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGMFVGDDVPLGGGVGMGL-RESDGELRGKFDAAITSMKEDGTLNTMIKKWFG........................................................................................................................................................................................................................................................... 212
30 -27.800d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  13  12....YAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFV-EQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLLKFTKIFEGVKFGVQAGTSHEAFMKQMMPS------VQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMF--FGKGVGVGI-RKEDADLKALFDKAIDAAIADGTVQKLSQQWFG........................................................................................................................................................................................................................................................... 249
31 -27.600d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  19  30............ESRTVQGFDVDIAKAITKKINGKTEFVEV-TSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKGSQ-IKSVDDLNASTVLAVKGSTSAANIRQHAPDA------KILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPEYELVGGTFTNEPYGIAI-NKGQENFLKAVNQALEEMHADGTYDKIYQKWFP........................................................................................................................................................................................................................................................... 233
32 -27.000d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  16  22VLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAGA-LFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQ------AKVVTADNPSEAMLMVANGQADAVVQTQISASVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISND....................................................................................................................................................................................................................................................................... 225
33 -26.600d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  15  30.............TGEIKGFEVDVAKLLAKSIDKKIKLVAV-NAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK-YKSLADMKGANIGVAQAATTKKAIGEAAKKIGIDVKFSEFP--DYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDSFEPQSYGIV---TKKDDPAFAKYVDDFVKEH--KNEIDALAKKWG............................................................................................................................................................................................................................................................ 230
34 -22.500d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  50SLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSGIHDPKLHRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYK........................................................................................................................................................................................................................................................... 286
35 -19.100d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  10  37VKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT........................................................................................................................................................................................................................................................... 275
36 -17.900d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  12  8LGSVEEQPFMFFATEG-SGMVNDMVVKLSEDLGFTYEYIQPDDRK-MIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGEGTTLNQVLELLDQKWGVIGSRHPETLLKTHRDSRYSRLVDEGVELKDLNHAIETLRGGLFVF-IDEGPVLAHNLISDCDVFSVGEEFQSFE--YAFGLPKDSPYKSLIDSHLLKFREEGFIDILWEKWSS........................................................................................................................................................................................................................................................... 246
37 -16.400d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  61.................YGFCIDLLIKLARTMNFTYEVHLVADGK-MMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGEL---FRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY.......................................................................................................................................................................................................................................................... 284
38 -13.500d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  5VVTTILESPYVMMKKNHEGYCVDLAAEIAKHCGFKYKLTIVGD-NGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAYSTKEFFRRSKIAVFDKMWTYMRSAEPSVFTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE....................................................................................................................................................................................................................................................... 258
39 -13.300d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  10  6RVVTVLEEPFVMVSENVLGFSIDVLDALSNYLGFNYEIYVAPDHK-LVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMESQAGIQKVKYGNYAF-VWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPK.......................................................................................................................................................................................................................................................... 259
40 -12.600d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  15SWREEPEGVHYEGNERFEGYAVDLIYMLAQECKFDFNFEPVRDNKYIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVDQNKVQ----SESNDTDNRMAWNKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRNCELTQIGESFGEK--HYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFNS.......................................................................................................................................................................................................................................................... 255
41 -12.400d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  12  33.........................GLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQLELGPHTYVGEHQLI-------CRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVERV----DLSYHESLQRIVKGDVDAVIWVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVDKHA........................................................................................................................................................................................................................................................................ 211

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.