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Query: [R] COG4624 Iron only hydrogenase large subunit, C-terminal domain, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDALIRPPMSFFADLPKDNKKCIKIGSPLALSLSDCLACSGCVSADEAGALSEDLSFVLDLSPQTSFVLSPQSKINIFNLYREDGMEYREFEAVLSSFLRSKFNIHRIVDTSYLRSKIYEETYREYMATNHLIVSACPGVVTYIERTAPYLIGYLSRVKSPQQMAFSLVKGSRTVSVMPCQDKKLENGRDGVKFDFILTTRGFCKALDSLGFRRPARASGKSLCSMEEAETTQWNIGTSSGGYAEFILGKHCVVETREIRNGIKEHLLDDGRTISQITGLENSINYFKSSKTKGPRHKMTEIFLCKNGCIGGPGQERVNDVEMDIREYDRNGREQPRIFYSSPGLEEKRVFREVKAKRVDLRVDWLast
1 -76.200d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]}  ali model 3D-neighbors follow..  20  2..................................................MDRVKNALNAPEKHVIVAMAPSVRASIGELF---NMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRFPMFTSCCPGWVRQAENYYPELLNNLSSAKSPQQIFGTASKTYYTVTVMPCTSKKFEADRPQMDIDAVITTRELAKMIKDAKIPFAKLEDSEADP-AMGEYSGAGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVNNKYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDILYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAH. 356
2 -19.000d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  14  26.......FVQIDEAKCIGCDTCSQYCPTAAIHIEACINCGQCLTHCPENAIYEA....................................................................................................................................................................................................................................................................................................................... 83
3 -18.000d1xera_ d.58.1.3 (A:) Ferredoxin {Sulfolobus sp. [TaxId: 2288]}  ali model 3D-neighbors follow..  18  30VLGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDCIFCMACVNVCPVAAIDVK....................................................................................................................................................................................................................................................................................................................... 101
4 -17.800d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}  ali model 3D-neighbors follow..  18  8..DERSKSLTVDRTKCLLCGRCVNACGKKCFDDTNCLLCGQCIIACPVAALSEKS...................................................................................................................................................................................................................................................................................................................... 83
5 -17.800d4kt0c_ d.58.1.2 (C:) automated matches {Synechocystis sp. [TaxId: 1148]}  ali model 3D-neighbors follow..  16  4.........VKIYDTCIGCTQCVRACPLDVLEMEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLA......................................................................................................................................................................................................................................................................................................... 79
6 -17.600d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  16  3.........FVNPEKCDGCKACEYICPNDLMTLDKCWECYSCVKMCPQGAIDVRGYVDYSPLGGACVPMR....................................................................................................................................................................................................................................................................................................... 80
7 -17.100d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  9  8..GVAINVPQWVPENCIQCNQCAFVCPHSAILPLDCMGCGNCADICPPKEKALVMQPLDTQRDA............................................................................................................................................................................................................................................................................................................. 105
8 -16.900d6fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  15  3..........VVTDNCIKCKDCVEVCPVDCIHPDECIDCALCEPECPAQAIFSEDEVPEDMQNAELAEVWPNITEK................................................................................................................................................................................................................................................................................................. 84
9 -16.200d3mmca1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  14  8.....QEAVKEYASWMDIENEVVKLCPTGAIKWDGCVRCMHCINKMPKALKPGD....................................................................................................................................................................................................................................................................................................................... 65
10 -15.800d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}  ali model 3D-neighbors follow..  18  3..........VINEACISCGACEPECPVNAISSGDCIDCGACAGVCPVDAPVQA....................................................................................................................................................................................................................................................................................................................... 55
11 -15.700d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  17  3..........VICEPCIGVKSCVEVCPVECIHPEECIDCGACVPACPVNAIYPEEDV.................................................................................................................................................................................................................................................................................................................... 60
12 -15.300d3iam9_ d.58.1.5 (9:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  15  25............LEKCIGCSLCAAACPAYAIYVERCIFCGLCEEACPTGAIVLGYDFEMADYEYSDLVYGKEDMLV................................................................................................................................................................................................................................................................................................. 113
13 -14.300d2fgoa_ d.58.1.1 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  16  3..........KITDDCINCDVCEPECPNGAISQGECTECPQCQQVCPVDCIPLDDANVESKDQLM............................................................................................................................................................................................................................................................................................................ 72
14 -14.200d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  15  103.........VIDEEMCINCGKCYMTCNDSGTVTDTCTGCTLCLSVCPI............................................................................................................................................................................................................................................................................................................................. 154
15 -13.700d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  10  26.....DDSVPVNRNLSIYDGPEQRFCPAGVINAQNCVHCKTCDIKDPSQNIN......................................................................................................................................................................................................................................................................................................................... 87
16 -12.700d3c7bb6 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  2.....TPPIPNDEAIRKTCEITVAACPTGAVDVEKCMYCGNCYTMCPGMPLFDPEN..................................................................................................................................................................................................................................................................................................................... 65
17 -11.100d1y5ib_ d.58.1.5 (B:) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  9  181............PRLCEHCLNCVATCPSGAIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKPRIEAGQPTVCSETCVGRIRYLGV---LYDADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEWKLALPLHPEYRTLPMV--WYVPPLSPIQSAADAGELGSNGISLRIPVQYLANLL--------------------------------TAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLAQAQEMYRYLAIANYEDRFVEAFPEKNGC-DGCHGSDTKFNLFNSRRI..................................... 499
18 -10.200d2h88b2 a.1.2.1 (B:115-246) Succinate dehydogenase {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  8  42.............YECILCACCSTSCPSYWWNGDKCHTIMNCTRTCPKGLNPGKAIAEIKK................................................................................................................................................................................................................................................................................................................ 126
19 -10.100d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1MTHFIKPYIIGNSRTADQGTNIQTPAQMAKYQFSGCINCGLCYAACPQFGLNPEF-------------IGPA---AITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVG-------------------YCSEVCPKHVDPAAA--------IQQGKVESSKDF....................................................................................................................................................................................................... 130
20 -9.980d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  85.EQNGKLEWLIRKDGCMHCEDCLKACPSAGFQSENCIGCGYCIAGCPFNIPRLNVDRVSVGQEPACVKTCPTGAIHFGT.............................................................................................................................................................................................................................................................................................. 187
21 -9.740d2bs2b1 a.1.2.1 (B:107-240) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  12  43.............DRCIECGCCIAACGTKIMREDGCMTLLACHDVCPKNLPLQSKIAYLRRK............................................................................................................................................................................................................................................................................................................... 128
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;