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Query: [S] COG4818 Predicted membrane protein, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSYNTSLGLSENIVAALCYPVGWLSGLFFLLLERKNKFVRFHAMQSVLLFMPIALFIFLVAWIPTIGWFIADGAGMTAMLLILIPMYMAFRGSKFKIPIIGNIAYNFAYGELast
1 -5.600d5ik4a2 b.29.1.4 (A:2933-3118) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  8  14AKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMF............................................................. 63
2 -5.540d1c01a_ b.11.1.5 (A:) Plant antimicrobial protein MIAMP1 {Macadamia nut (Macadamia integrifolia) [TaxId: 60698]}  ali model 3D-neighbors follow..  12  26IHQKGGYDFSYTGQTAALYNQAGCSGVAHTRFGSSARACNPFGWKSIFI.............................................................. 74
3 -5.470d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  8  25.......................FETIAFGSSKVKPLYTKYFPVADYFI------------EEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMKVPYFGN......... 91
4 -5.220d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  9  91.......................IVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLQVVRYSLLIHAAAGIILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKH 195
5 -5.160g1ugw.1 b.77.3.1 (B:,A:) Jacalin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]}  ali 3D-neighbors follow..  23  99....RSLTFKTNKKTYGPY--GVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL..................................................... 150
6 -4.880d2p8ia2 d.58.55.1 (A:1-116) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}  ali model 3D-neighbors follow..  13  65.........QEQFADLVGWLTLNHGALDIFLHPNTGDALRDHRDAAVWIGHSHELVLSALN.................................................. 116
7 -4.700d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889 {Rhodopseudomonas palustris [TaxId: 1076]}  ali model 3D-neighbors follow..  27  59..........................ALLSLFEYPNMQVRLQAAKLTLAVAPVKAREQLEAIV................................................ 95
8 -4.500d3cx5c2 f.21.1.2 (C:1-261) automated matches {Saccharomyces cerevisiae [TaxId: 764097]}  ali model 3D-neighbors follow..  15  36..............LGLCLVIQIVTGIFMAMHYSSNIELAFHANGASFFFMVMFMYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHAIPFVGNDIVSWL... 165
9 -4.230d1c3ma_ b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke (Helianthus tuberosus) [TaxId: 4233]}  ali model 3D-neighbors follow..  24  94....TSLTFQTNKKVYGPF--GTVASSSFSLPLTKGKFAGFFGNSGDVLDSIGGVV....................................................... 143
10 -4.190d2xuta_ f.38.1.3 (A:) Microbial PepT or POT {Shewanella oneidensis MR-1 [TaxId: 211586]}  ali model 3D-neighbors follow..  12  1.........................QIPYIIASEACERFSFYGMRNILTP--------------FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGIADRFFGK. 72
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.