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Query: [S] COG5501 Predicted secreted protein, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLILALIPVTLTASLALAEPEKPNNPLADGTTWRDLKGDVVGEAAILDGSALFSVTAPYRANDAATVPVTIEQTDAAADPIESLKLVIDENPAPVAAEIRFGPAMAPLKFETRVRVNQYSNIRAIAETPRGIFMHGRFVKASGGCSAPATKDPVAALKDMGEMRLKLFGGKGEVQKARREAQIMIRHPNYSGLQRDQITQLFVSAKFITELVVKQGDELLFALDGGISISENPVFRFSYTDNGAPDFTVHAVDTDGNVFDRVLPKTPPALast
1 -45.400d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  25  10..........................................................................................................................................................................PAKPKAGEEFRLQVVAQHPNEPGTRRDA-EGKLIPAKYINLVEVYFEGEKVAEARPGPSTSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKLEL.. 106
2 -44.300d2oxga_ b.1.18.0 (A:) automated matches {Paracoccus denitrificans [TaxId: 266]}  ali model 3D-neighbors follow..  20  1..............................................................................................................................................................ADDAKPRVKV--PSSAKAGETVTVKALISHKMESGQRKDA-DGKLIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTWYDDDGSVYEDVKPIAVA. 108
3 -20.300d3qzba1 b.1.13.0 (A:1-131) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  20......................................................VIEAPEKVKKDEKVQIVVTVPNTTEHHIRWIKVFFQPDGDPYVQGPNIGAVYTEPTVTTVVKLNRSGTIIALSYCNHGLWESSQKITVE............................................................................................................................... 130
4 -7.490d1vzia1 b.1.13.1 (A:38-125) Desulfoferrodoxin C-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}  ali model 3D-neighbors follow..  10  3................................................TVDAAKAKHVPVIEKIDGGYKVKVGAPMEEKHYIQWIELLADDK-----CYTQFLKPGQAPEAVFLIE---AAKVVAREYCNHGHWKAEN.................................................................................................................................... 88
5 -6.580d2xg5a2 b.7.2.1 (A:125-217) PapD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16......................................................................................................................................................................................GYRIENPT---------------PYYVTVIGLGGSEKQAEEGEFETVMLS-PRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGS. 86
6 -6.480d3qp3a1 b.1.1.4 (A:2-101) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1..........................................................PFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKKIHYTNTSGVLTLEILCHTDDSGTYRAVCTNYKGEASDYATLDVTGG............................................................................................................................. 100
7 -6.400d2oz4a3 b.1.1.0 (A:367-450) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  3..........................................................PRLDERDCPGNWTWPENSQ-----QTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV................................................................................................................................ 81
8 -6.030d2ag4a2 b.95.1.1 (A:3-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  2....................................................................SFSWDNCDEGKDPAVIRSLTLEPDPIVVPGNVTLS-----VVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCT---------FEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGVPDLELPSWLTTGNYRIESVLSSSGKRLGCIKIAASLKG...................................... 161
9 -5.860d3edna2 d.21.1.0 (A:132-299) automated matches {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]}  ali model 3D-neighbors follow..  10  3...........................................................................................SKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERMKPNNEVF-----------PSVLKEIPNASIHPICLETYDEKVHMHGRHFS--SAYAGTIEDPVTGTAMGAYYATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKL..................... 150
10 -5.790d5lxva_ b.2.2.0 (A:) automated matches {Ruminococcus flavefaciens [TaxId: 641112]}  ali model 3D-neighbors follow..  1...................................................ETVQISASNAAKAGDQFEVKVSLADVPSTGIQGIDFAVTYDNTVVIDKITVGEIADTKAASSDQTASLLPTFDVSIQNSEGY------SSVIWSTAVEDSSYWISKDGVLCTITGTV--SSNAKPGAESPIKL...................................................................................... 127

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.