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Query: [S] COG5572 Predicted integral membrane protein, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRGHDGYIVSSSPETGGLRGGEILFADHCNLGHPRNELSHDRAAQGRLGANPPGESLMTRTATTAALAAAIALSAGVSIAAADEHKAGAQTEKCYGVSKAGENDCKAGAGTSCAGTSKVDYQGDAWKMVKKGTCVTIKTPKGMGSLTPKALast
1 -6.810d2bgha1 c.43.1.4 (A:4-210) Vinorine synthase {Rauvolfia serpentina [TaxId: 4060]}  ali model 3D-neighbors follow..  11  68.......LTHFYPLAGRINVNSSV---DCNDS---------VEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTA------IGVNLSHKIADVLSLATFLNAWTATCRGETEIV............. 183
2 -6.720d4kxqa1 c.31.1.0 (A:234-510) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  28.....GAGVSVSCGIPDFRSRDGIYADFPDLPDPQAMFDIEYFRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRI-HGSFATASCLICKYKVDCEAVRGDIFNQVVPRCPRCPADEPLAIMKP.. 176
3 -6.380d3fmua_ a.93.1.0 (A:) automated matches {Pleurotus eryngii [TaxId: 5323]}  ali model 3D-neighbors follow..  16  47...HDAIGFSPTLGGGGA-DGSIIAFDTIETNFPAN--------AGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIP----------FFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVLLASHSIAA..... 173
4 -5.860d4r3fa_ b.62.1.0 (A:) automated matches {Chaetomium thermophilum [TaxId: 759272]}  ali model 3D-neighbors follow..  15  51.RLVPGFIIQGGDPTGTGHGGESIYDGDLDPWPMDQRKGHNAGPMGVNFKDEFHSRLKFNRLLGMANEGAPDTNGSQFFFTLGKAEELNNKNTLFGRVAAGDT............................................... 159
5 -5.690d1es5a_ e.3.1.1 (A:) D-ala carboxypeptidase/transpeptidase {Streptomyces sp., K15 [TaxId: 1931]}  ali model 3D-neighbors follow..  9  4.......IAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLN---LDAKVTIQKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLG............ 131
6 -5.650d1wila1 g.50.1.3 (A:8-83) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  15...............EVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTE........................................................................................... 58
7 -5.580d1sr4a_ b.42.2.1 (A:) Cytolethal distending toxin subunit A {Haemophilus ducreyi [TaxId: 730]}  ali model 3D-neighbors follow..  13  68....REYFRFVNQSLG---YGNGLIHDICSLDKLAQEFELLPTDSGAVVIKSVSQG------------------------------------RCVTYNPVSTTFYSTVTLSVCDGATEPSRD-QTWYLAPPVL................. 161
8 -5.560d3cs0a2 b.36.1.4 (A:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  21KGKDQGVVVNTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLL....................................................................................... 88
9 -5.560d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  6ITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEV............................... 124
10 -5.470d3ko8a_ c.2.1.0 (A:) automated matches {Pyrobaculum calidifontis [TaxId: 410359]}  ali model 3D-neighbors follow..  17  5VTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKGDVVFHFAANPEVRLST........................................................................... 79
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.